Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1613

Experiment: KB with Trimethoprim 125 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1612 and Psyr_1613 are separated by 231 nucleotidesPsyr_1613 and Psyr_1614 are separated by 120 nucleotides Psyr_1612: Psyr_1612 - septum site-determining protein MinD, at 1,814,844 to 1,815,656 _1612 Psyr_1613: Psyr_1613 - septum site-determining protein MinC, at 1,815,888 to 1,816,628 _1613 Psyr_1614: Psyr_1614 - lipid A biosynthesis acyltransferase, at 1,816,749 to 1,817,681 _1614 Position (kb) 1815 1816 1817Strain fitness (log2 ratio) -3 -2 -1 0 1at 1815.313 kb on + strand, within Psyr_1612at 1815.314 kb on - strand, within Psyr_1612at 1815.636 kb on - strandat 1815.770 kb on - strandat 1815.791 kb on - strandat 1815.791 kb on - strandat 1815.791 kb on - strandat 1815.791 kb on - strandat 1815.791 kb on - strandat 1815.982 kb on + strand, within Psyr_1613at 1815.982 kb on + strand, within Psyr_1613at 1815.982 kb on + strand, within Psyr_1613at 1815.983 kb on - strand, within Psyr_1613at 1815.983 kb on - strand, within Psyr_1613at 1816.088 kb on - strand, within Psyr_1613at 1816.168 kb on + strand, within Psyr_1613at 1816.168 kb on + strand, within Psyr_1613at 1816.168 kb on + strand, within Psyr_1613at 1816.168 kb on + strand, within Psyr_1613at 1816.169 kb on - strand, within Psyr_1613at 1816.169 kb on - strand, within Psyr_1613at 1816.169 kb on - strand, within Psyr_1613at 1816.473 kb on - strand, within Psyr_1613at 1816.594 kb on - strandat 1816.594 kb on - strandat 1816.635 kb on + strandat 1816.635 kb on + strandat 1816.636 kb on - strandat 1816.637 kb on + strandat 1816.638 kb on - strandat 1816.638 kb on - strandat 1816.638 kb on - strandat 1816.638 kb on - strandat 1816.638 kb on - strandat 1816.638 kb on - strandat 1816.638 kb on - strandat 1816.638 kb on - strandat 1816.638 kb on - strandat 1816.672 kb on - strandat 1816.672 kb on - strandat 1816.672 kb on - strandat 1816.672 kb on - strandat 1816.672 kb on - strandat 1816.672 kb on - strandat 1816.673 kb on + strandat 1816.714 kb on + strandat 1816.714 kb on + strandat 1816.715 kb on - strandat 1816.715 kb on - strandat 1816.715 kb on - strandat 1816.715 kb on - strandat 1816.891 kb on - strand, within Psyr_1614at 1816.891 kb on - strand, within Psyr_1614at 1817.154 kb on + strand, within Psyr_1614at 1817.202 kb on + strand, within Psyr_1614at 1817.202 kb on + strand, within Psyr_1614at 1817.203 kb on - strand, within Psyr_1614at 1817.315 kb on - strand, within Psyr_1614at 1817.341 kb on - strand, within Psyr_1614at 1817.611 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Trimethoprim 125 ug/ml
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1,815,313 + Psyr_1612 0.58 -1.2
1,815,314 - Psyr_1612 0.58 -2.2
1,815,636 - -0.2
1,815,770 - +0.3
1,815,791 - +0.8
1,815,791 - +0.6
1,815,791 - -0.7
1,815,791 - -0.8
1,815,791 - -0.9
1,815,982 + Psyr_1613 0.13 -1.9
1,815,982 + Psyr_1613 0.13 -0.8
1,815,982 + Psyr_1613 0.13 -1.6
1,815,983 - Psyr_1613 0.13 -2.2
1,815,983 - Psyr_1613 0.13 -3.0
1,816,088 - Psyr_1613 0.27 -0.2
1,816,168 + Psyr_1613 0.38 -1.2
1,816,168 + Psyr_1613 0.38 -2.9
1,816,168 + Psyr_1613 0.38 -2.2
1,816,168 + Psyr_1613 0.38 -2.6
1,816,169 - Psyr_1613 0.38 -1.6
1,816,169 - Psyr_1613 0.38 -3.1
1,816,169 - Psyr_1613 0.38 -0.2
1,816,473 - Psyr_1613 0.79 -2.4
1,816,594 - -0.8
1,816,594 - -1.8
1,816,635 + -2.2
1,816,635 + -0.2
1,816,636 - -3.2
1,816,637 + -2.6
1,816,638 - +0.4
1,816,638 - +1.4
1,816,638 - +1.1
1,816,638 - +0.8
1,816,638 - -1.4
1,816,638 - +0.4
1,816,638 - -0.4
1,816,638 - -1.2
1,816,638 - -2.4
1,816,672 - -0.3
1,816,672 - +1.0
1,816,672 - +0.0
1,816,672 - +0.1
1,816,672 - +0.0
1,816,672 - -0.5
1,816,673 + -1.6
1,816,714 + -1.8
1,816,714 + -1.1
1,816,715 - +0.1
1,816,715 - -0.0
1,816,715 - -0.7
1,816,715 - +0.8
1,816,891 - Psyr_1614 0.15 +1.2
1,816,891 - Psyr_1614 0.15 -1.0
1,817,154 + Psyr_1614 0.43 -0.0
1,817,202 + Psyr_1614 0.49 +0.8
1,817,202 + Psyr_1614 0.49 -0.8
1,817,203 - Psyr_1614 0.49 -0.5
1,817,315 - Psyr_1614 0.61 -2.6
1,817,341 - Psyr_1614 0.63 -0.5
1,817,611 - -1.6

Or see this region's nucleotide sequence