Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1606

Experiment: KB with Trimethoprim 125 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1604 and Psyr_1605 overlap by 4 nucleotidesPsyr_1605 and Psyr_1606 are separated by 78 nucleotidesPsyr_1606 and Psyr_1607 are separated by 312 nucleotides Psyr_1604: Psyr_1604 - Binding-protein-dependent transport systems inner membrane component, at 1,803,349 to 1,804,191 _1604 Psyr_1605: Psyr_1605 - conserved hypothetical protein, at 1,804,188 to 1,804,994 _1605 Psyr_1606: Psyr_1606 - ABC transporter, periplasmic substrate-binding protein, at 1,805,073 to 1,806,140 _1606 Psyr_1607: Psyr_1607 - transcriptional regulator, GntR family, at 1,806,453 to 1,807,214 _1607 Position (kb) 1805 1806 1807Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1804.429 kb on + strand, within Psyr_1605at 1804.429 kb on + strand, within Psyr_1605at 1804.429 kb on + strand, within Psyr_1605at 1804.429 kb on + strand, within Psyr_1605at 1804.430 kb on - strand, within Psyr_1605at 1804.430 kb on - strand, within Psyr_1605at 1804.430 kb on - strand, within Psyr_1605at 1804.430 kb on - strand, within Psyr_1605at 1804.430 kb on - strand, within Psyr_1605at 1804.613 kb on - strand, within Psyr_1605at 1804.613 kb on - strand, within Psyr_1605at 1804.690 kb on + strand, within Psyr_1605at 1804.690 kb on + strand, within Psyr_1605at 1804.690 kb on + strand, within Psyr_1605at 1804.691 kb on - strand, within Psyr_1605at 1804.691 kb on - strand, within Psyr_1605at 1804.691 kb on - strand, within Psyr_1605at 1804.691 kb on - strand, within Psyr_1605at 1804.691 kb on - strand, within Psyr_1605at 1804.691 kb on - strand, within Psyr_1605at 1804.711 kb on + strand, within Psyr_1605at 1804.711 kb on + strand, within Psyr_1605at 1804.712 kb on - strand, within Psyr_1605at 1804.750 kb on + strand, within Psyr_1605at 1804.750 kb on + strand, within Psyr_1605at 1804.751 kb on - strand, within Psyr_1605at 1804.751 kb on - strand, within Psyr_1605at 1804.833 kb on + strand, within Psyr_1605at 1804.833 kb on + strand, within Psyr_1605at 1804.834 kb on - strand, within Psyr_1605at 1804.834 kb on - strand, within Psyr_1605at 1804.886 kb on - strand, within Psyr_1605at 1804.952 kb on - strandat 1805.230 kb on - strand, within Psyr_1606at 1805.290 kb on + strand, within Psyr_1606at 1805.291 kb on - strand, within Psyr_1606at 1805.291 kb on - strand, within Psyr_1606at 1805.291 kb on - strand, within Psyr_1606at 1805.291 kb on - strand, within Psyr_1606at 1805.291 kb on - strand, within Psyr_1606at 1805.329 kb on + strand, within Psyr_1606at 1805.329 kb on + strand, within Psyr_1606at 1805.329 kb on + strand, within Psyr_1606at 1805.329 kb on + strand, within Psyr_1606at 1805.330 kb on - strand, within Psyr_1606at 1805.330 kb on - strand, within Psyr_1606at 1805.330 kb on - strand, within Psyr_1606at 1805.392 kb on + strand, within Psyr_1606at 1805.392 kb on + strand, within Psyr_1606at 1805.392 kb on + strand, within Psyr_1606at 1805.393 kb on - strand, within Psyr_1606at 1805.422 kb on + strand, within Psyr_1606at 1805.422 kb on + strand, within Psyr_1606at 1805.422 kb on + strand, within Psyr_1606at 1805.423 kb on - strand, within Psyr_1606at 1805.423 kb on - strand, within Psyr_1606at 1805.596 kb on - strand, within Psyr_1606at 1805.596 kb on - strand, within Psyr_1606at 1805.647 kb on + strand, within Psyr_1606at 1805.647 kb on + strand, within Psyr_1606at 1805.647 kb on + strand, within Psyr_1606at 1805.647 kb on + strand, within Psyr_1606at 1805.647 kb on + strand, within Psyr_1606at 1805.647 kb on + strand, within Psyr_1606at 1805.648 kb on - strand, within Psyr_1606at 1805.648 kb on - strand, within Psyr_1606at 1805.737 kb on + strand, within Psyr_1606at 1805.738 kb on - strand, within Psyr_1606at 1805.738 kb on - strand, within Psyr_1606at 1805.806 kb on + strand, within Psyr_1606at 1805.806 kb on + strand, within Psyr_1606at 1805.806 kb on + strand, within Psyr_1606at 1805.807 kb on - strand, within Psyr_1606at 1805.856 kb on + strand, within Psyr_1606at 1805.857 kb on - strand, within Psyr_1606at 1805.857 kb on - strand, within Psyr_1606at 1805.857 kb on - strand, within Psyr_1606at 1805.857 kb on - strand, within Psyr_1606at 1806.060 kb on - strandat 1806.151 kb on + strandat 1806.195 kb on + strandat 1806.195 kb on + strandat 1806.195 kb on + strandat 1806.206 kb on + strandat 1806.206 kb on + strandat 1806.207 kb on - strandat 1806.256 kb on + strandat 1806.305 kb on - strandat 1806.305 kb on - strandat 1806.305 kb on - strandat 1806.305 kb on - strandat 1806.384 kb on + strandat 1806.384 kb on + strandat 1806.400 kb on + strandat 1806.401 kb on - strandat 1806.410 kb on - strandat 1806.452 kb on + strandat 1806.452 kb on + strandat 1806.452 kb on + strandat 1806.452 kb on + strandat 1806.452 kb on + strandat 1806.452 kb on + strandat 1806.452 kb on + strandat 1806.452 kb on + strandat 1806.452 kb on + strandat 1806.452 kb on + strandat 1806.452 kb on + strandat 1806.453 kb on - strandat 1806.453 kb on - strandat 1806.453 kb on - strandat 1806.453 kb on - strandat 1806.453 kb on - strandat 1806.453 kb on - strandat 1806.453 kb on - strandat 1806.453 kb on - strandat 1806.453 kb on - strandat 1806.453 kb on - strandat 1806.453 kb on - strandat 1806.453 kb on - strandat 1806.453 kb on - strandat 1806.453 kb on - strandat 1806.453 kb on - strandat 1806.453 kb on - strandat 1806.453 kb on - strandat 1806.453 kb on - strandat 1806.461 kb on + strandat 1806.461 kb on + strandat 1806.462 kb on - strandat 1806.475 kb on + strandat 1806.476 kb on - strandat 1806.508 kb on + strandat 1806.508 kb on + strandat 1806.509 kb on - strandat 1806.509 kb on - strandat 1806.726 kb on + strand, within Psyr_1607at 1806.727 kb on - strand, within Psyr_1607at 1806.727 kb on - strand, within Psyr_1607at 1806.727 kb on - strand, within Psyr_1607at 1806.915 kb on + strand, within Psyr_1607at 1806.915 kb on + strand, within Psyr_1607at 1806.915 kb on + strand, within Psyr_1607at 1806.915 kb on + strand, within Psyr_1607at 1806.915 kb on + strand, within Psyr_1607at 1806.915 kb on + strand, within Psyr_1607at 1806.915 kb on + strand, within Psyr_1607at 1806.915 kb on + strand, within Psyr_1607at 1806.916 kb on - strand, within Psyr_1607at 1806.916 kb on - strand, within Psyr_1607at 1806.916 kb on - strand, within Psyr_1607at 1806.916 kb on - strand, within Psyr_1607at 1806.916 kb on - strand, within Psyr_1607at 1806.916 kb on - strand, within Psyr_1607at 1806.916 kb on - strand, within Psyr_1607at 1806.928 kb on - strand, within Psyr_1607at 1806.993 kb on + strand, within Psyr_1607at 1806.993 kb on + strand, within Psyr_1607at 1806.993 kb on + strand, within Psyr_1607at 1806.994 kb on - strand, within Psyr_1607at 1806.994 kb on - strand, within Psyr_1607at 1807.125 kb on + strand, within Psyr_1607at 1807.125 kb on + strand, within Psyr_1607

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Trimethoprim 125 ug/ml
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1,804,429 + Psyr_1605 0.30 -0.6
1,804,429 + Psyr_1605 0.30 -0.3
1,804,429 + Psyr_1605 0.30 +1.0
1,804,429 + Psyr_1605 0.30 +1.1
1,804,430 - Psyr_1605 0.30 +0.8
1,804,430 - Psyr_1605 0.30 -0.6
1,804,430 - Psyr_1605 0.30 +0.4
1,804,430 - Psyr_1605 0.30 +0.1
1,804,430 - Psyr_1605 0.30 -0.8
1,804,613 - Psyr_1605 0.53 -1.2
1,804,613 - Psyr_1605 0.53 +0.4
1,804,690 + Psyr_1605 0.62 -0.2
1,804,690 + Psyr_1605 0.62 -1.1
1,804,690 + Psyr_1605 0.62 -0.2
1,804,691 - Psyr_1605 0.62 +0.0
1,804,691 - Psyr_1605 0.62 -0.6
1,804,691 - Psyr_1605 0.62 -1.2
1,804,691 - Psyr_1605 0.62 +0.7
1,804,691 - Psyr_1605 0.62 -0.1
1,804,691 - Psyr_1605 0.62 +0.2
1,804,711 + Psyr_1605 0.65 -0.1
1,804,711 + Psyr_1605 0.65 -0.4
1,804,712 - Psyr_1605 0.65 -1.8
1,804,750 + Psyr_1605 0.70 -0.4
1,804,750 + Psyr_1605 0.70 -0.2
1,804,751 - Psyr_1605 0.70 -1.0
1,804,751 - Psyr_1605 0.70 -1.1
1,804,833 + Psyr_1605 0.80 +0.5
1,804,833 + Psyr_1605 0.80 +1.4
1,804,834 - Psyr_1605 0.80 +0.1
1,804,834 - Psyr_1605 0.80 +0.2
1,804,886 - Psyr_1605 0.86 +0.2
1,804,952 - -1.7
1,805,230 - Psyr_1606 0.15 +2.3
1,805,290 + Psyr_1606 0.20 -2.4
1,805,291 - Psyr_1606 0.20 +0.3
1,805,291 - Psyr_1606 0.20 +0.1
1,805,291 - Psyr_1606 0.20 -2.8
1,805,291 - Psyr_1606 0.20 +0.7
1,805,291 - Psyr_1606 0.20 -0.4
1,805,329 + Psyr_1606 0.24 -0.6
1,805,329 + Psyr_1606 0.24 +1.1
1,805,329 + Psyr_1606 0.24 +1.4
1,805,329 + Psyr_1606 0.24 -0.2
1,805,330 - Psyr_1606 0.24 +0.3
1,805,330 - Psyr_1606 0.24 -0.2
1,805,330 - Psyr_1606 0.24 +0.1
1,805,392 + Psyr_1606 0.30 -0.5
1,805,392 + Psyr_1606 0.30 +1.4
1,805,392 + Psyr_1606 0.30 -0.6
1,805,393 - Psyr_1606 0.30 -0.6
1,805,422 + Psyr_1606 0.33 +0.0
1,805,422 + Psyr_1606 0.33 +1.4
1,805,422 + Psyr_1606 0.33 -0.6
1,805,423 - Psyr_1606 0.33 -0.0
1,805,423 - Psyr_1606 0.33 +0.2
1,805,596 - Psyr_1606 0.49 +0.5
1,805,596 - Psyr_1606 0.49 +0.8
1,805,647 + Psyr_1606 0.54 +1.1
1,805,647 + Psyr_1606 0.54 +0.9
1,805,647 + Psyr_1606 0.54 +1.2
1,805,647 + Psyr_1606 0.54 -0.4
1,805,647 + Psyr_1606 0.54 -0.0
1,805,647 + Psyr_1606 0.54 -0.6
1,805,648 - Psyr_1606 0.54 -1.2
1,805,648 - Psyr_1606 0.54 +0.0
1,805,737 + Psyr_1606 0.62 +1.6
1,805,738 - Psyr_1606 0.62 +1.4
1,805,738 - Psyr_1606 0.62 +0.7
1,805,806 + Psyr_1606 0.69 -0.1
1,805,806 + Psyr_1606 0.69 -1.5
1,805,806 + Psyr_1606 0.69 +1.5
1,805,807 - Psyr_1606 0.69 +1.5
1,805,856 + Psyr_1606 0.73 -0.9
1,805,857 - Psyr_1606 0.73 +0.0
1,805,857 - Psyr_1606 0.73 +1.1
1,805,857 - Psyr_1606 0.73 +0.5
1,805,857 - Psyr_1606 0.73 -1.0
1,806,060 - +1.7
1,806,151 + +0.4
1,806,195 + +1.1
1,806,195 + +0.8
1,806,195 + -0.1
1,806,206 + -0.1
1,806,206 + +1.1
1,806,207 - -0.2
1,806,256 + -0.5
1,806,305 - +3.1
1,806,305 - +1.4
1,806,305 - -0.6
1,806,305 - +0.7
1,806,384 + -0.2
1,806,384 + +0.0
1,806,400 + +0.8
1,806,401 - +1.0
1,806,410 - +0.5
1,806,452 + +0.8
1,806,452 + +0.5
1,806,452 + +0.1
1,806,452 + +0.4
1,806,452 + -0.4
1,806,452 + +0.2
1,806,452 + +1.0
1,806,452 + +1.8
1,806,452 + -0.5
1,806,452 + +0.8
1,806,452 + +0.0
1,806,453 - +2.1
1,806,453 - +0.3
1,806,453 - +0.9
1,806,453 - +0.3
1,806,453 - +0.8
1,806,453 - -0.6
1,806,453 - +2.4
1,806,453 - +0.6
1,806,453 - +0.3
1,806,453 - +0.5
1,806,453 - -0.8
1,806,453 - +0.4
1,806,453 - -0.0
1,806,453 - +0.9
1,806,453 - +0.2
1,806,453 - +0.3
1,806,453 - -0.0
1,806,453 - -0.7
1,806,461 + +0.2
1,806,461 + +1.0
1,806,462 - -0.8
1,806,475 + +1.6
1,806,476 - +0.4
1,806,508 + +0.7
1,806,508 + -0.2
1,806,509 - -0.8
1,806,509 - -1.0
1,806,726 + Psyr_1607 0.36 -0.5
1,806,727 - Psyr_1607 0.36 +2.1
1,806,727 - Psyr_1607 0.36 +0.6
1,806,727 - Psyr_1607 0.36 -0.6
1,806,915 + Psyr_1607 0.61 -1.6
1,806,915 + Psyr_1607 0.61 -0.2
1,806,915 + Psyr_1607 0.61 -0.7
1,806,915 + Psyr_1607 0.61 -0.8
1,806,915 + Psyr_1607 0.61 -0.5
1,806,915 + Psyr_1607 0.61 -1.3
1,806,915 + Psyr_1607 0.61 -0.2
1,806,915 + Psyr_1607 0.61 -1.3
1,806,916 - Psyr_1607 0.61 +0.8
1,806,916 - Psyr_1607 0.61 +0.3
1,806,916 - Psyr_1607 0.61 +0.3
1,806,916 - Psyr_1607 0.61 +0.1
1,806,916 - Psyr_1607 0.61 +1.6
1,806,916 - Psyr_1607 0.61 +1.3
1,806,916 - Psyr_1607 0.61 -1.0
1,806,928 - Psyr_1607 0.62 +0.9
1,806,993 + Psyr_1607 0.71 -0.8
1,806,993 + Psyr_1607 0.71 +0.8
1,806,993 + Psyr_1607 0.71 +0.2
1,806,994 - Psyr_1607 0.71 -0.0
1,806,994 - Psyr_1607 0.71 +0.9
1,807,125 + Psyr_1607 0.88 -0.0
1,807,125 + Psyr_1607 0.88 -0.3

Or see this region's nucleotide sequence