Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1554

Experiment: KB with Trimethoprim 125 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Trimethoprim 125 ug/ml
1,745,875	-				+0.2
1,745,901	+				-0.6
1,745,950	+				+0.2
1,745,950	+				+1.1
1,745,950	+				-0.2
1,745,950	+				+0.7
1,745,950	+				-1.5
1,745,950	+				-2.1
1,745,950	+				+0.2
1,745,951	-				+0.9
1,745,951	-				-0.7
1,745,951	-				-0.6
1,745,951	-				-0.8
1,745,951	-				+1.6
1,746,053	-				+0.7
1,746,056	-				+1.3
1,746,056	-				-0.2
1,746,056	-				+1.1
1,746,056	-				-0.2
1,746,087	+				+0.8
1,746,110	+				-0.0
1,746,158	+		Psyr_1553	0.18	+0.3
1,746,200	+		Psyr_1553	0.30	-0.0
1,746,200	+		Psyr_1553	0.30	-0.8
1,746,201	-		Psyr_1553	0.30	-0.3
1,746,201	-		Psyr_1553	0.30	+1.5
1,746,292	+		Psyr_1553	0.57	-0.3
1,746,348	-		Psyr_1553	0.74	-1.1
1,746,348	-		Psyr_1553	0.74	-1.1
1,746,351	+		Psyr_1553	0.75	-0.1
1,746,351	+		Psyr_1553	0.75	+0.5
1,746,351	+		Psyr_1553	0.75	-0.2
1,746,352	-		Psyr_1553	0.75	-1.5
1,746,352	-		Psyr_1553	0.75	+0.6
1,746,352	-		Psyr_1553	0.75	-1.4
1,746,352	-		Psyr_1553	0.75	-0.6
1,746,354	-		Psyr_1553	0.76	-2.4
1,746,422	+				+0.0
1,746,423	-				-0.2
1,746,459	+				+0.7
1,746,470	+				+1.4
1,746,533	+				-1.5
1,746,534	-				-0.3
1,746,543	-				-2.9
1,746,620	+				-0.1
1,746,649	+				+1.5
1,746,650	-				-2.0
1,746,650	-				+0.8
1,746,650	-				-1.6
1,746,663	+				+0.7
1,746,694	+				-0.0
1,746,694	+				+0.2
1,746,718	-				-2.1
1,746,739	+				-1.0
1,746,741	+				+0.6
1,746,742	-				-2.4
1,746,780	+				+1.1
1,746,826	+				-0.5
1,746,830	-				-0.2
1,746,834	-				-2.0
1,746,861	-				+0.4
1,746,863	+				-0.2
1,746,863	+				+0.1
1,747,037	-		Psyr_1554	0.17	+0.2
1,747,084	-		Psyr_1554	0.22	-0.9
1,747,087	-		Psyr_1554	0.22	-0.4
1,747,188	+		Psyr_1554	0.32	-0.2
1,747,220	+		Psyr_1554	0.35	-0.3
1,747,223	-		Psyr_1554	0.35	+1.1
1,747,453	+		Psyr_1554	0.58	-1.2
1,747,454	-		Psyr_1554	0.58	-0.2
1,747,584	+		Psyr_1554	0.70	-0.9
1,747,584	+		Psyr_1554	0.70	+0.5
1,747,584	+		Psyr_1554	0.70	+1.0
1,747,640	+		Psyr_1554	0.76	-1.5
1,747,641	-		Psyr_1554	0.76	+0.1
1,747,755	+		Psyr_1554	0.87	+0.2
1,747,849	+				-1.2
1,747,849	+				-1.2
1,747,849	+				-0.7
1,747,849	+				+0.8
1,747,849	+				-1.8
1,747,849	+				-1.8
1,747,849	+				-2.4
1,747,849	+				-2.2
1,747,850	-				-0.2
1,747,850	-				-0.8
1,747,893	-				-0.6
1,747,907	+				-3.5
1,747,907	+				-3.5
1,747,912	+				-1.9
1,747,913	-				-1.4
1,747,913	-				-1.0
1,747,937	+				-1.0
1,747,938	-				-1.5
1,747,993	-				-0.6
1,748,080	-				-0.5
1,748,166	+				+0.2
1,748,166	+				+0.2
1,748,167	-				-1.2
1,748,167	-				-0.5
1,748,167	-				+0.2
1,748,200	+				-1.3
1,748,200	+				-0.2
1,748,367	+				-1.5
1,748,401	-				+0.3
1,748,871	+				-0.4