Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1505

Experiment: KB with Trimethoprim 125 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Trimethoprim 125 ug/ml
1,691,025	-		Psyr_1503	0.68	-0.3
1,691,029	+		Psyr_1503	0.69	+0.8
1,691,029	+		Psyr_1503	0.69	-1.5
1,691,030	-		Psyr_1503	0.69	-0.7
1,691,030	-		Psyr_1503	0.69	-0.4
1,691,069	+		Psyr_1503	0.72	-0.2
1,691,069	+		Psyr_1503	0.72	+0.8
1,691,069	+		Psyr_1503	0.72	-1.1
1,691,069	+		Psyr_1503	0.72	-1.4
1,691,069	+				+1.8
1,691,069	+		Psyr_1503	0.72	-0.2
1,691,070	-		Psyr_1503	0.72	+1.1
1,691,111	+		Psyr_1503	0.75	-0.0
1,691,111	+		Psyr_1503	0.75	+0.4
1,691,111	+		Psyr_1503	0.75	+1.4
1,691,112	-		Psyr_1503	0.75	+0.1
1,691,132	+		Psyr_1503	0.77	+0.0
1,691,132	+		Psyr_1503	0.77	+1.8
1,691,132	+		Psyr_1503	0.77	+0.3
1,691,132	+		Psyr_1503	0.77	-0.3
1,691,132	+		Psyr_1503	0.77	+0.2
1,691,133	-		Psyr_1503	0.77	+0.5
1,691,133	-		Psyr_1503	0.77	+1.3
1,691,133	-		Psyr_1503	0.77	+1.6
1,691,133	-		Psyr_1503	0.77	-0.4
1,691,133	-		Psyr_1503	0.77	+0.8
1,691,153	+		Psyr_1503	0.78	-0.6
1,691,153	+		Psyr_1503	0.78	+0.0
1,691,255	-		Psyr_1503	0.86	-0.2
1,691,260	+		Psyr_1503	0.86	+0.1
1,691,276	+		Psyr_1503	0.88	+0.5
1,691,276	+		Psyr_1503	0.88	-2.0
1,691,276	+		Psyr_1503	0.88	-1.3
1,691,276	+		Psyr_1503	0.88	-1.0
1,691,276	+		Psyr_1503	0.88	-0.6
1,691,276	+		Psyr_1503	0.88	-0.1
1,691,276	+		Psyr_1503	0.88	+0.3
1,691,277	-		Psyr_1503	0.88	+0.6
1,691,277	-		Psyr_1503	0.88	-1.5
1,691,277	-		Psyr_1503	0.88	+0.1
1,691,289	-		Psyr_1503	0.89	+0.1
1,691,293	+		Psyr_1503	0.89	-0.3
1,691,294	-		Psyr_1503	0.89	-1.2
1,691,297	+		Psyr_1503	0.89	-1.8
1,691,297	+		Psyr_1503	0.89	-0.5
1,691,297	+		Psyr_1503	0.89	-0.2
1,691,297	+		Psyr_1503	0.89	-2.2
1,691,297	+		Psyr_1503	0.89	-1.2
1,691,297	+		Psyr_1503	0.89	-1.0
1,691,297	+		Psyr_1503	0.89	-0.6
1,691,298	-		Psyr_1503	0.89	-0.3
1,691,298	-		Psyr_1503	0.89	-0.4
1,691,298	-		Psyr_1503	0.89	-0.8
1,691,298	-		Psyr_1503	0.89	-1.2
1,691,298	-		Psyr_1503	0.89	+1.4
1,691,298	-		Psyr_1503	0.89	-0.4
1,691,298	-		Psyr_1503	0.89	-0.0
1,691,298	-		Psyr_1503	0.89	-0.3
1,691,298	-		Psyr_1503	0.89	-1.5
1,691,324	+				-1.4
1,691,325	-				+0.8
1,691,325	-				-1.3
1,691,325	-				+0.9
1,691,396	+				-0.8
1,691,408	+				+0.8
1,691,408	+				-0.2
1,691,408	+				-0.8
1,691,409	-				+0.7
1,691,409	-				-0.9
1,691,429	-				-0.1
1,691,429	-				+0.3
1,691,550	-		Psyr_1504	0.23	+0.1
1,691,565	-		Psyr_1504	0.27	-0.5
1,691,599	-		Psyr_1504	0.36	-0.6
1,691,601	+		Psyr_1504	0.36	-0.2
1,691,601	+		Psyr_1504	0.36	+1.2
1,691,601	+		Psyr_1504	0.36	+1.1
1,691,601	+		Psyr_1504	0.36	+0.4
1,691,601	+		Psyr_1504	0.36	-0.3
1,691,602	-		Psyr_1504	0.36	-0.3
1,691,602	-		Psyr_1504	0.36	+0.4
1,691,602	-		Psyr_1504	0.36	-1.4
1,691,701	+		Psyr_1504	0.61	+0.2
1,691,701	+		Psyr_1504	0.61	-0.2
1,691,701	+		Psyr_1504	0.61	-1.5
1,691,702	-		Psyr_1504	0.61	-0.2
1,691,717	+		Psyr_1504	0.65	-0.8
1,691,717	+		Psyr_1504	0.65	+0.3
1,691,717	+		Psyr_1504	0.65	+0.0
1,691,717	+		Psyr_1504	0.65	+1.1
1,691,717	+		Psyr_1504	0.65	-0.8
1,691,717	+		Psyr_1504	0.65	+0.1
1,691,717	+		Psyr_1504	0.65	-1.5
1,691,718	-		Psyr_1504	0.65	-0.4
1,691,718	-		Psyr_1504	0.65	-0.1
1,691,718	-		Psyr_1504	0.65	+0.1
1,691,718	-		Psyr_1504	0.65	+2.2
1,691,772	-		Psyr_1504	0.79	-0.7
1,691,831	-				+1.7
1,691,842	+				+0.3
1,691,850	+				+0.1
1,691,851	-				-0.1
1,691,851	-				-1.0
1,691,851	-				+0.1
1,691,884	+				-0.2
1,691,884	+				+1.0
1,691,884	+				+1.1
1,691,884	+				+1.5
1,691,884	+				-0.0
1,691,884	+				-0.9
1,691,885	-				+0.8
1,691,885	-				+0.0
1,691,885	-				-0.2
1,691,888	+				-0.2
1,691,888	+				-0.4
1,691,888	+				-0.4
1,691,888	+				-0.4
1,691,888	+				+0.6
1,691,889	-				+1.4
1,691,889	-				-1.8
1,691,889	-				-1.3
1,691,889	-				+0.8
1,691,889	-				-0.5
1,691,910	+				-1.9
1,691,910	+				+1.2
1,691,910	+				+0.1
1,691,911	-				-1.7
1,691,911	-				+0.2
1,691,911	-				-0.2
1,691,911	-				-0.9
1,691,936	+				+1.7
1,691,943	+				+0.8
1,691,943	+				+1.0
1,691,943	+				+0.2
1,691,985	-				-2.9
1,692,019	+				-0.3
1,692,019	+				-0.4
1,692,020	-				-3.0
1,692,020	-				-1.5
1,692,020	-				-2.4
1,692,020	-				-2.8
1,692,020	-				-2.9
1,692,020	-				-1.2
1,692,020	-				-1.2
1,692,020	-				+0.5
1,692,020	-				-2.9
1,692,020	-				-1.5
1,692,045	-		Psyr_1505	0.13	-2.6
1,692,052	+		Psyr_1505	0.16	+0.0
1,692,082	+		Psyr_1505	0.26	+0.8
1,692,083	-		Psyr_1505	0.27	+0.8
1,692,083	-		Psyr_1505	0.27	-0.4
1,692,152	+		Psyr_1505	0.52	-1.2
1,692,153	-		Psyr_1505	0.52	-2.1
1,692,273	+				+1.3
1,692,326	-				+0.3
1,692,326	-				+0.1
1,692,339	+				-0.4
1,692,339	+				-0.4
1,692,339	+				+0.4
1,692,339	+				-0.3
1,692,339	+				-0.3
1,692,339	+				-1.2
1,692,339	+				-0.4
1,692,339	+				+0.6
1,692,339	+				-0.2
1,692,339	+				+0.3
1,692,339	+				-0.2
1,692,339	+				+0.6
1,692,339	+				-0.2
1,692,339	+				-0.2
1,692,339	+				+0.5
1,692,339	+				+0.5
1,692,339	+				+0.6
1,692,339	+				-0.6
1,692,339	+				-1.2
1,692,339	+				+1.0
1,692,339	+				-0.0
1,692,339	+				+0.1
1,692,339	+				+0.2
1,692,339	+				-0.9
1,692,340	-				-1.5
1,692,340	-				-0.5
1,692,340	-				+0.4
1,692,340	-				+0.5
1,692,340	-				-2.1
1,692,340	-				+0.0
1,692,340	-				-1.2
1,692,340	-				+0.4
1,692,340	-				-0.1
1,692,340	-				+1.6
1,692,340	-				+1.4
1,692,340	-				-0.8
1,692,340	-				+0.9
1,692,340	-				+0.5
1,692,340	-				-2.6
1,692,340	-				+0.5
1,692,340	-				+0.3
1,692,340	-				-0.2
1,692,340	-				+0.1
1,692,341	+				-0.4
1,692,341	+				-0.5
1,692,341	+				-1.1
1,692,341	+				+0.8
1,692,342	-				+1.1
1,692,342	-				-0.3
1,692,393	+		Psyr_1506	0.11	+1.2
1,692,393	+		Psyr_1506	0.11	-3.8
1,692,393	+		Psyr_1506	0.11	-0.5
1,692,393	+		Psyr_1506	0.11	+0.5
1,692,393	+		Psyr_1506	0.11	+0.8
1,692,393	+		Psyr_1506	0.11	-0.8
1,692,393	+		Psyr_1506	0.11	-0.9
1,692,393	+		Psyr_1506	0.11	-0.2
1,692,393	+		Psyr_1506	0.11	-0.2
1,692,393	+		Psyr_1506	0.11	-0.4
1,692,393	+		Psyr_1506	0.11	+0.0
1,692,393	+		Psyr_1506	0.11	+2.4
1,692,393	+		Psyr_1506	0.11	-1.2
1,692,393	+		Psyr_1506	0.11	-1.2
1,692,393	+		Psyr_1506	0.11	-0.0
1,692,394	-		Psyr_1506	0.12	-0.8
1,692,394	-		Psyr_1506	0.12	+0.1
1,692,394	-		Psyr_1506	0.12	-1.0
1,692,394	-		Psyr_1506	0.12	-1.2
1,692,394	-		Psyr_1506	0.12	+0.2
1,692,394	-		Psyr_1506	0.12	+0.4
1,692,394	-		Psyr_1506	0.12	+0.4
1,692,394	-		Psyr_1506	0.12	+0.5
1,692,394	-		Psyr_1506	0.12	-1.2
1,692,394	-		Psyr_1506	0.12	-0.8
1,692,394	-		Psyr_1506	0.12	-2.0
1,692,394	-		Psyr_1506	0.12	+0.5
1,692,397	+		Psyr_1506	0.12	-0.3
1,692,398	-		Psyr_1506	0.12	+0.5
1,692,425	-		Psyr_1506	0.15	-0.8
1,692,434	+		Psyr_1506	0.16	-0.4
1,692,448	+		Psyr_1506	0.17	-1.5
1,692,448	+		Psyr_1506	0.17	-0.3
1,692,448	+		Psyr_1506	0.17	-1.2
1,692,449	-		Psyr_1506	0.17	-0.6
1,692,518	+		Psyr_1506	0.25	-0.1
1,692,518	+		Psyr_1506	0.25	+0.5
1,692,519	-		Psyr_1506	0.25	+1.4
1,692,607	+		Psyr_1506	0.34	-0.4
1,692,608	-		Psyr_1506	0.34	-0.8
1,692,618	+		Psyr_1506	0.35	+0.6
1,692,619	-		Psyr_1506	0.35	+0.7
1,692,621	+		Psyr_1506	0.35	+0.4
1,692,621	+		Psyr_1506	0.35	-1.2
1,692,621	+		Psyr_1506	0.35	-0.4
1,692,621	+		Psyr_1506	0.35	-0.0
1,692,622	-		Psyr_1506	0.35	+0.4
1,692,622	-		Psyr_1506	0.35	+0.2
1,692,622	-		Psyr_1506	0.35	+0.0
1,692,622	-		Psyr_1506	0.35	+2.4
1,692,667	+		Psyr_1506	0.40	-0.2
1,692,667	+		Psyr_1506	0.40	+0.2
1,692,668	-		Psyr_1506	0.40	-0.4
1,692,668	-		Psyr_1506	0.40	-1.4
1,692,670	+		Psyr_1506	0.40	+0.7
1,692,671	-		Psyr_1506	0.41	-0.9
1,692,708	+		Psyr_1506	0.44	-0.8
1,692,708	+		Psyr_1506	0.44	-0.9
1,692,796	+		Psyr_1506	0.54	-0.1
1,692,796	+		Psyr_1506	0.54	+1.4
1,692,823	+		Psyr_1506	0.56	+0.8
1,692,823	+		Psyr_1506	0.56	-0.9
1,692,823	+		Psyr_1506	0.56	+0.1
1,692,823	+		Psyr_1506	0.56	-2.2
1,692,823	+		Psyr_1506	0.56	-1.4
1,692,823	+		Psyr_1506	0.56	-0.1
1,692,823	+		Psyr_1506	0.56	+1.5
1,692,824	-		Psyr_1506	0.57	-0.2
1,692,824	-		Psyr_1506	0.57	-0.2
1,692,824	-		Psyr_1506	0.57	-1.2
1,692,824	-		Psyr_1506	0.57	+0.9
1,692,824	-		Psyr_1506	0.57	+0.8
1,692,824	-		Psyr_1506	0.57	+0.4
1,692,833	+		Psyr_1506	0.58	-0.1
1,692,833	+		Psyr_1506	0.58	-1.5
1,692,833	+		Psyr_1506	0.58	+1.4
1,692,833	+		Psyr_1506	0.58	+0.2
1,692,834	-		Psyr_1506	0.58	+1.5
1,692,834	-		Psyr_1506	0.58	-0.2
1,692,834	-		Psyr_1506	0.58	-0.8
1,692,834	-		Psyr_1506	0.58	-0.5
1,692,834	-		Psyr_1506	0.58	+0.1
1,692,834	-		Psyr_1506	0.58	-1.4
1,693,141	+		Psyr_1506	0.90	+0.8
1,693,142	-				+0.2
1,693,142	-				+0.3
1,693,193	-				-0.6
1,693,231	+				+0.3
1,693,231	+				-0.1
1,693,232	-				+1.4
1,693,232	-				+1.0
1,693,232	-				-0.3
1,693,235	+				-0.0
1,693,235	+				-0.4
1,693,235	+				+0.1
1,693,235	+				-1.6
1,693,235	+				-1.2
1,693,235	+				-1.5
1,693,235	+				+0.2
1,693,236	-				-0.5
1,693,236	-				+0.1
1,693,236	-				+0.3
1,693,236	-				-0.1
1,693,236	-				-0.4
1,693,236	-				-0.9
1,693,236	-				+0.0