Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1474

Experiment: KB with Trimethoprim 125 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Trimethoprim 125 ug/ml
1,660,962	+		Psyr_1473	0.65	+0.6
1,660,962	+		Psyr_1473	0.65	-0.2
1,660,962	+		Psyr_1473	0.65	+0.8
1,661,057	-		Psyr_1473	0.69	-0.5
1,661,174	-		Psyr_1473	0.75	-1.9
1,661,328	+		Psyr_1473	0.83	-1.2
1,661,328	+		Psyr_1473	0.83	-0.6
1,661,328	+		Psyr_1473	0.83	+0.2
1,661,664	+				+0.6
1,661,664	+				+1.0
1,661,664	+				+0.3
1,661,665	-				+0.1
1,661,701	+				-0.5
1,661,721	+				-0.8
1,661,721	+				+0.7
1,661,721	+				-1.0
1,661,817	+				-1.2
1,661,827	+				-1.2
1,661,827	+				+0.2
1,661,828	-				-0.7
1,661,828	-				+0.7
1,661,831	+				+1.0
1,661,831	+				-0.4
1,661,831	+				+0.8
1,661,831	+				-0.2
1,661,831	+				+0.5
1,661,831	+				+0.4
1,661,832	-				+0.4
1,661,832	-				+0.6
1,661,837	+				-3.0
1,661,838	-				-1.1
1,661,838	-				+1.0
1,661,923	+				-1.8
1,661,924	-				-0.1
1,661,924	-				-0.5
1,661,963	+				-0.8
1,661,964	-				+1.3
1,661,990	+				-1.9
1,661,991	-				+1.4
1,661,991	-				-0.5
1,662,044	+				-0.2
1,662,089	-				-0.2
1,662,103	+				-0.8
1,662,104	-				+0.2
1,662,109	+				+1.0
1,662,110	-				-0.8
1,662,138	+		Psyr_1474	0.11	-0.8
1,662,138	+		Psyr_1474	0.11	-2.0
1,662,138	+		Psyr_1474	0.11	-0.2
1,662,139	-		Psyr_1474	0.11	+0.2
1,662,139	-		Psyr_1474	0.11	-1.6
1,662,205	+		Psyr_1474	0.16	-0.5
1,662,206	-		Psyr_1474	0.16	-0.8
1,662,206	-		Psyr_1474	0.16	-0.3
1,662,253	+		Psyr_1474	0.19	-0.0
1,662,257	+		Psyr_1474	0.19	+0.6
1,662,258	-		Psyr_1474	0.19	-1.2
1,662,258	-		Psyr_1474	0.19	-0.9
1,662,316	+		Psyr_1474	0.23	-0.2
1,662,320	+		Psyr_1474	0.23	+0.6
1,662,341	-		Psyr_1474	0.24	-0.3
1,662,446	+		Psyr_1474	0.31	-1.6
1,662,447	-				-0.2
1,662,447	-		Psyr_1474	0.31	-1.2
1,662,504	+		Psyr_1474	0.35	-0.5
1,662,547	-				-1.2
1,662,633	+		Psyr_1474	0.43	+1.5
1,662,639	-		Psyr_1474	0.44	-1.9
1,662,639	-		Psyr_1474	0.44	-1.8
1,662,639	-		Psyr_1474	0.44	-2.4
1,662,640	+		Psyr_1474	0.44	-0.3
1,662,653	-		Psyr_1474	0.45	-2.2
1,662,670	+		Psyr_1474	0.46	-0.5
1,662,670	+		Psyr_1474	0.46	-0.9
1,662,671	-		Psyr_1474	0.46	-1.8
1,662,671	-		Psyr_1474	0.46	-2.0
1,662,698	-		Psyr_1474	0.47	+0.5
1,662,740	+		Psyr_1474	0.50	-2.0
1,662,745	+		Psyr_1474	0.50	+0.1
1,662,901	+		Psyr_1474	0.61	-1.0
1,662,921	+		Psyr_1474	0.62	+1.1
1,662,937	+		Psyr_1474	0.63	-0.5
1,662,938	-		Psyr_1474	0.63	-2.7
1,662,938	-		Psyr_1474	0.63	-1.0
1,662,957	+		Psyr_1474	0.64	+0.8
1,662,957	+		Psyr_1474	0.64	+0.0
1,663,004	-		Psyr_1474	0.67	-0.2
1,663,007	-		Psyr_1474	0.67	-0.7
1,663,047	-		Psyr_1474	0.70	+0.6
1,663,093	+				+1.8
1,663,181	+		Psyr_1474	0.79	-1.7
1,663,182	-		Psyr_1474	0.79	-1.2
1,663,276	+		Psyr_1474	0.85	-3.7
1,663,315	+		Psyr_1474	0.87	-0.7
1,663,330	-		Psyr_1474	0.88	+0.1
1,663,403	+				-0.1
1,663,456	+				-0.7
1,663,457	-				-0.8
1,663,457	-				-0.5
1,663,500	+				+0.4
1,663,501	-				-1.5
1,663,514	+				+0.8
1,663,535	+				+0.8
1,663,555	+				-1.3
1,663,555	+				+0.3
1,663,556	-				-0.3
1,663,566	+				-0.2
1,663,566	+				+0.3
1,663,654	-				-0.1
1,663,665	+				+2.4
1,663,666	-				-2.4
1,663,666	-				+0.8
1,663,666	-				-1.0
1,663,678	+				+1.0
1,663,678	+				+0.8
1,663,679	-				+0.4
1,663,679	-				-0.5
1,663,713	-				-0.5
1,663,732	-				+1.3
1,663,953	+		Psyr_1475	0.16	+0.0
1,663,954	-		Psyr_1475	0.17	+1.9
1,663,954	-		Psyr_1475	0.17	-1.2
1,664,148	-		Psyr_1475	0.37	-1.4
1,664,244	+		Psyr_1475	0.47	-0.8
1,664,244	+		Psyr_1475	0.47	-1.1
1,664,244	+		Psyr_1475	0.47	+1.0
1,664,244	+		Psyr_1475	0.47	-0.2
1,664,245	-		Psyr_1475	0.47	+0.2
1,664,245	-		Psyr_1475	0.47	+0.7
1,664,245	-		Psyr_1475	0.47	+0.7
1,664,245	-		Psyr_1475	0.47	+0.4
1,664,245	-		Psyr_1475	0.47	+0.5
1,664,245	-		Psyr_1475	0.47	+0.4
1,664,245	-		Psyr_1475	0.47	-1.0
1,664,350	-		Psyr_1475	0.58	+0.6
1,664,392	+		Psyr_1475	0.62	-1.0
1,664,424	+		Psyr_1475	0.65	-0.3
1,664,425	-		Psyr_1475	0.65	+0.6
1,664,435	-		Psyr_1475	0.66	-0.2
1,664,499	+		Psyr_1475	0.73	-0.2
1,664,499	+		Psyr_1475	0.73	-1.0
1,664,499	+		Psyr_1475	0.73	-0.2
1,664,500	-		Psyr_1475	0.73	-2.8
1,664,500	-		Psyr_1475	0.73	+0.3
1,664,500	-		Psyr_1475	0.73	+0.0