Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1459

Experiment: KB with Trimethoprim 125 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Trimethoprim 125 ug/ml
1,645,549	+		Psyr_1458	0.88	-1.6
1,645,549	+		Psyr_1458	0.88	+0.2
1,645,594	-				-0.0
1,645,660	+				-0.7
1,645,660	+				+0.2
1,645,660	+				+0.1
1,645,660	+				-0.8
1,645,661	-				-2.2
1,645,661	-				-0.9
1,645,661	-				-0.4
1,645,661	-				+0.2
1,645,661	-				-0.3
1,645,661	-				+0.3
1,645,661	-				-0.6
1,645,690	+				+0.9
1,645,765	+				+0.4
1,645,765	+				-0.0
1,645,765	+				+0.3
1,645,765	+				+0.3
1,645,765	+				-0.8
1,645,765	+				+0.0
1,645,765	+				-0.4
1,645,765	+				-0.6
1,645,765	+				+0.4
1,645,765	+				+1.8
1,645,766	-				-2.1
1,645,766	-				-1.5
1,645,766	-				+0.8
1,645,766	-				-0.2
1,645,766	-				+0.4
1,645,766	-				-0.0
1,645,766	-				+1.4
1,645,766	-				+0.5
1,645,766	-				+1.4
1,645,766	-				+0.1
1,645,766	-				-0.9
1,645,786	-				-0.5
1,645,847	+				-0.1
1,645,848	-				+0.8
1,645,857	+				+1.2
1,645,885	-				-0.5
1,645,885	-				+0.5
1,645,885	-				+1.4
1,645,917	+				+0.2
1,645,918	-				-0.4
1,645,989	+				+2.4
1,646,035	+				-0.6
1,646,035	+				-1.2
1,646,036	-				-0.7
1,646,036	-				-0.2
1,646,090	-				-0.6
1,646,093	+				-1.5
1,646,093	+				+1.4
1,646,093	+				+0.1
1,646,093	+				+0.6
1,646,094	-				-2.2
1,646,094	-				+0.5
1,646,094	-				-1.2
1,646,094	-				-0.3
1,646,255	-				-2.4
1,646,255	-				+0.2
1,646,255	-				-0.8
1,646,276	+				-0.9
1,646,319	+				-0.4
1,646,340	-				-1.3
1,646,398	+		Psyr_1459	0.11	-0.8
1,646,402	+		Psyr_1459	0.12	-1.2
1,646,403	-		Psyr_1459	0.12	+0.8
1,646,420	+		Psyr_1459	0.14	+0.8
1,646,447	+		Psyr_1459	0.18	+0.2
1,646,462	+		Psyr_1459	0.20	-1.4
1,646,633	+		Psyr_1459	0.41	-0.7
1,646,654	-		Psyr_1459	0.44	-2.8
1,646,835	+		Psyr_1459	0.67	-0.8
1,646,836	-		Psyr_1459	0.67	-0.8
1,646,872	+		Psyr_1459	0.72	-0.4
1,646,873	-		Psyr_1459	0.72	-0.6
1,646,876	-		Psyr_1459	0.72	-0.5
1,646,958	+				-1.2
1,647,095	+				-1.3
1,647,096	-				-2.4
1,647,096	-				-2.0
1,647,118	+				-0.5
1,647,122	-				-0.2
1,647,253	-				+0.8
1,647,294	-		Psyr_1460	0.31	-2.2
1,647,300	+		Psyr_1460	0.32	-1.8
1,647,324	+		Psyr_1460	0.36	+0.1
1,647,325	-		Psyr_1460	0.36	-2.2
1,647,406	+				-0.8
1,647,448	+		Psyr_1460	0.56	+0.2
1,647,448	+		Psyr_1460	0.56	+0.3
1,647,478	+		Psyr_1460	0.61	-1.0
1,647,543	-		Psyr_1460	0.71	-0.3
1,647,551	-		Psyr_1460	0.72	-0.8
1,647,565	+		Psyr_1460	0.74	-2.4
1,647,566	-		Psyr_1460	0.75	-0.5
1,647,623	-		Psyr_1460	0.84	-0.7
1,647,623	-		Psyr_1460	0.84	+0.4
1,647,650	+		Psyr_1460	0.88	-1.7
1,647,692	+				-2.1
1,647,692	+				-0.4
1,647,693	-				-0.7
1,647,700	+				-0.8
1,647,701	-				+0.1
1,647,701	-				-0.9
1,647,701	-				-1.4
1,647,717	+				-2.2
1,647,718	-				-1.9
1,647,822	+				-0.4
1,647,864	-		Psyr_1461	0.12	+1.1
1,647,917	-		Psyr_1461	0.16	-0.0
1,647,950	+		Psyr_1461	0.18	+0.8
1,648,035	-		Psyr_1461	0.24	+0.6
1,648,041	+		Psyr_1461	0.25	-1.4
1,648,042	-		Psyr_1461	0.25	+0.6
1,648,042	-		Psyr_1461	0.25	+2.1
1,648,043	+		Psyr_1461	0.25	-2.4
1,648,043	+		Psyr_1461	0.25	-2.5
1,648,044	-		Psyr_1461	0.25	+0.7
1,648,044	-		Psyr_1461	0.25	-0.3
1,648,069	+		Psyr_1461	0.27	-0.2
1,648,081	+		Psyr_1461	0.28	-1.5
1,648,081	+		Psyr_1461	0.28	-2.0
1,648,082	-		Psyr_1461	0.28	+0.8
1,648,082	-		Psyr_1461	0.28	+2.5
1,648,087	-		Psyr_1461	0.28	+0.1
1,648,088	+		Psyr_1461	0.28	-1.2