Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1457

Experiment: KB with Trimethoprim 125 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1455 and Psyr_1456 overlap by 4 nucleotidesPsyr_1456 and Psyr_1457 overlap by 16 nucleotidesPsyr_1457 and Psyr_1458 are separated by 8 nucleotides Psyr_1455: Psyr_1455 - conserved hypothetical protein, at 1,643,124 to 1,643,630 _1455 Psyr_1456: Psyr_1456 - conserved hypothetical protein, at 1,643,627 to 1,644,184 _1456 Psyr_1457: Psyr_1457 - conserved hypothetical protein, at 1,644,169 to 1,644,915 _1457 Psyr_1458: Psyr_1458 - hypothetical protein, at 1,644,924 to 1,645,634 _1458 Position (kb) 1644 1645Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1643.323 kb on - strand, within Psyr_1455at 1643.451 kb on + strand, within Psyr_1455at 1643.452 kb on - strand, within Psyr_1455at 1643.452 kb on - strand, within Psyr_1455at 1643.452 kb on - strand, within Psyr_1455at 1643.519 kb on - strand, within Psyr_1455at 1643.522 kb on - strand, within Psyr_1455at 1643.522 kb on - strand, within Psyr_1455at 1643.522 kb on - strand, within Psyr_1455at 1643.522 kb on - strand, within Psyr_1455at 1643.585 kb on + strandat 1643.585 kb on + strandat 1643.585 kb on + strandat 1643.585 kb on + strandat 1643.585 kb on + strandat 1643.586 kb on - strandat 1643.586 kb on - strandat 1643.586 kb on - strandat 1643.586 kb on - strandat 1643.586 kb on - strandat 1643.695 kb on - strand, within Psyr_1456at 1643.795 kb on + strand, within Psyr_1456at 1643.795 kb on + strand, within Psyr_1456at 1643.795 kb on + strand, within Psyr_1456at 1643.796 kb on - strand, within Psyr_1456at 1643.796 kb on - strand, within Psyr_1456at 1643.796 kb on - strand, within Psyr_1456at 1643.796 kb on - strand, within Psyr_1456at 1643.796 kb on - strand, within Psyr_1456at 1643.812 kb on - strand, within Psyr_1456at 1643.929 kb on + strand, within Psyr_1456at 1643.930 kb on - strand, within Psyr_1456at 1643.930 kb on - strand, within Psyr_1456at 1643.930 kb on - strand, within Psyr_1456at 1643.930 kb on - strand, within Psyr_1456at 1643.930 kb on - strand, within Psyr_1456at 1643.930 kb on - strand, within Psyr_1456at 1643.930 kb on - strand, within Psyr_1456at 1643.930 kb on - strand, within Psyr_1456at 1643.930 kb on - strand, within Psyr_1456at 1643.930 kb on - strand, within Psyr_1456at 1643.930 kb on - strand, within Psyr_1456at 1643.930 kb on - strand, within Psyr_1456at 1643.971 kb on + strand, within Psyr_1456at 1643.971 kb on + strand, within Psyr_1456at 1643.971 kb on + strand, within Psyr_1456at 1643.971 kb on + strand, within Psyr_1456at 1643.971 kb on + strand, within Psyr_1456at 1643.971 kb on + strand, within Psyr_1456at 1643.972 kb on - strand, within Psyr_1456at 1643.972 kb on - strand, within Psyr_1456at 1643.972 kb on - strand, within Psyr_1456at 1643.972 kb on - strand, within Psyr_1456at 1643.972 kb on - strand, within Psyr_1456at 1644.055 kb on - strand, within Psyr_1456at 1644.359 kb on + strand, within Psyr_1457at 1644.359 kb on + strand, within Psyr_1457at 1644.359 kb on + strand, within Psyr_1457at 1644.359 kb on + strand, within Psyr_1457at 1644.359 kb on + strand, within Psyr_1457at 1644.359 kb on + strand, within Psyr_1457at 1644.359 kb on + strand, within Psyr_1457at 1644.360 kb on - strand, within Psyr_1457at 1644.360 kb on - strand, within Psyr_1457at 1644.360 kb on - strand, within Psyr_1457at 1644.360 kb on - strand, within Psyr_1457at 1644.360 kb on - strand, within Psyr_1457at 1644.360 kb on - strand, within Psyr_1457at 1644.360 kb on - strand, within Psyr_1457at 1644.360 kb on - strand, within Psyr_1457at 1644.360 kb on - strand, within Psyr_1457at 1644.545 kb on + strand, within Psyr_1457at 1644.546 kb on - strand, within Psyr_1457at 1644.546 kb on - strand, within Psyr_1457at 1644.546 kb on - strand, within Psyr_1457at 1644.557 kb on + strand, within Psyr_1457at 1644.558 kb on - strand, within Psyr_1457at 1644.680 kb on + strand, within Psyr_1457at 1644.681 kb on - strand, within Psyr_1457at 1644.681 kb on - strand, within Psyr_1457at 1644.905 kb on + strandat 1644.906 kb on - strandat 1644.906 kb on - strandat 1644.925 kb on + strandat 1645.035 kb on + strand, within Psyr_1458at 1645.036 kb on - strand, within Psyr_1458at 1645.105 kb on + strand, within Psyr_1458at 1645.106 kb on - strand, within Psyr_1458at 1645.549 kb on + strand, within Psyr_1458at 1645.549 kb on + strand, within Psyr_1458at 1645.594 kb on - strandat 1645.660 kb on + strandat 1645.660 kb on + strandat 1645.660 kb on + strandat 1645.660 kb on + strandat 1645.661 kb on - strandat 1645.661 kb on - strandat 1645.661 kb on - strandat 1645.661 kb on - strandat 1645.661 kb on - strandat 1645.661 kb on - strandat 1645.661 kb on - strandat 1645.690 kb on + strandat 1645.765 kb on + strandat 1645.765 kb on + strandat 1645.765 kb on + strandat 1645.765 kb on + strandat 1645.765 kb on + strandat 1645.765 kb on + strandat 1645.765 kb on + strandat 1645.765 kb on + strandat 1645.765 kb on + strandat 1645.765 kb on + strandat 1645.766 kb on - strandat 1645.766 kb on - strandat 1645.766 kb on - strandat 1645.766 kb on - strandat 1645.766 kb on - strandat 1645.766 kb on - strandat 1645.766 kb on - strandat 1645.766 kb on - strandat 1645.766 kb on - strandat 1645.766 kb on - strandat 1645.766 kb on - strandat 1645.786 kb on - strandat 1645.847 kb on + strandat 1645.848 kb on - strandat 1645.857 kb on + strandat 1645.885 kb on - strandat 1645.885 kb on - strandat 1645.885 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Trimethoprim 125 ug/ml
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1,643,323 - Psyr_1455 0.39 +1.5
1,643,451 + Psyr_1455 0.64 +0.6
1,643,452 - Psyr_1455 0.65 +1.8
1,643,452 - Psyr_1455 0.65 -1.2
1,643,452 - Psyr_1455 0.65 -0.8
1,643,519 - Psyr_1455 0.78 -0.9
1,643,522 - Psyr_1455 0.79 -0.8
1,643,522 - Psyr_1455 0.79 +1.0
1,643,522 - Psyr_1455 0.79 -0.9
1,643,522 - Psyr_1455 0.79 -0.8
1,643,585 + -0.5
1,643,585 + +1.1
1,643,585 + +0.8
1,643,585 + -0.1
1,643,585 + -0.0
1,643,586 - -3.3
1,643,586 - +0.3
1,643,586 - +0.2
1,643,586 - +0.4
1,643,586 - -0.1
1,643,695 - Psyr_1456 0.12 +0.2
1,643,795 + Psyr_1456 0.30 -1.5
1,643,795 + Psyr_1456 0.30 -1.0
1,643,795 + Psyr_1456 0.30 +0.1
1,643,796 - Psyr_1456 0.30 -1.0
1,643,796 - Psyr_1456 0.30 -0.2
1,643,796 - Psyr_1456 0.30 -0.4
1,643,796 - Psyr_1456 0.30 -0.8
1,643,796 - Psyr_1456 0.30 -0.2
1,643,812 - Psyr_1456 0.33 +1.1
1,643,929 + Psyr_1456 0.54 -2.3
1,643,930 - Psyr_1456 0.54 -0.2
1,643,930 - Psyr_1456 0.54 +1.8
1,643,930 - Psyr_1456 0.54 +0.4
1,643,930 - Psyr_1456 0.54 +0.8
1,643,930 - Psyr_1456 0.54 +2.2
1,643,930 - Psyr_1456 0.54 +0.2
1,643,930 - Psyr_1456 0.54 -0.2
1,643,930 - Psyr_1456 0.54 +1.8
1,643,930 - Psyr_1456 0.54 -1.2
1,643,930 - Psyr_1456 0.54 +0.3
1,643,930 - Psyr_1456 0.54 -0.3
1,643,930 - Psyr_1456 0.54 -1.9
1,643,971 + Psyr_1456 0.62 +0.1
1,643,971 + Psyr_1456 0.62 -0.3
1,643,971 + Psyr_1456 0.62 -0.2
1,643,971 + Psyr_1456 0.62 -1.7
1,643,971 + Psyr_1456 0.62 -1.2
1,643,971 + Psyr_1456 0.62 +0.2
1,643,972 - Psyr_1456 0.62 +0.2
1,643,972 - Psyr_1456 0.62 -2.0
1,643,972 - Psyr_1456 0.62 -0.6
1,643,972 - Psyr_1456 0.62 -0.4
1,643,972 - Psyr_1456 0.62 +0.3
1,644,055 - Psyr_1456 0.77 -0.5
1,644,359 + Psyr_1457 0.25 -0.3
1,644,359 + Psyr_1457 0.25 +0.5
1,644,359 + Psyr_1457 0.25 -0.1
1,644,359 + Psyr_1457 0.25 +0.2
1,644,359 + Psyr_1457 0.25 +1.1
1,644,359 + Psyr_1457 0.25 +0.8
1,644,359 + Psyr_1457 0.25 -0.8
1,644,360 - Psyr_1457 0.26 +0.3
1,644,360 - Psyr_1457 0.26 -1.2
1,644,360 - Psyr_1457 0.26 +0.8
1,644,360 - Psyr_1457 0.26 -2.7
1,644,360 - Psyr_1457 0.26 -1.3
1,644,360 - Psyr_1457 0.26 +1.4
1,644,360 - Psyr_1457 0.26 -2.8
1,644,360 - Psyr_1457 0.26 +0.7
1,644,360 - Psyr_1457 0.26 +1.1
1,644,545 + Psyr_1457 0.50 -0.9
1,644,546 - Psyr_1457 0.50 -0.7
1,644,546 - Psyr_1457 0.50 +1.4
1,644,546 - Psyr_1457 0.50 -0.1
1,644,557 + Psyr_1457 0.52 +1.5
1,644,558 - Psyr_1457 0.52 -0.1
1,644,680 + Psyr_1457 0.68 +0.5
1,644,681 - Psyr_1457 0.69 +1.2
1,644,681 - Psyr_1457 0.69 -0.6
1,644,905 + -0.0
1,644,906 - +0.2
1,644,906 - +0.7
1,644,925 + +0.1
1,645,035 + Psyr_1458 0.16 -0.3
1,645,036 - Psyr_1458 0.16 -2.1
1,645,105 + Psyr_1458 0.25 -0.6
1,645,106 - Psyr_1458 0.26 +1.4
1,645,549 + Psyr_1458 0.88 -1.6
1,645,549 + Psyr_1458 0.88 +0.2
1,645,594 - -0.0
1,645,660 + -0.7
1,645,660 + +0.2
1,645,660 + +0.1
1,645,660 + -0.8
1,645,661 - -2.2
1,645,661 - -0.9
1,645,661 - -0.4
1,645,661 - +0.2
1,645,661 - -0.3
1,645,661 - +0.3
1,645,661 - -0.6
1,645,690 + +0.9
1,645,765 + +0.4
1,645,765 + -0.0
1,645,765 + +0.3
1,645,765 + +0.3
1,645,765 + -0.8
1,645,765 + +0.0
1,645,765 + -0.4
1,645,765 + -0.6
1,645,765 + +0.4
1,645,765 + +1.8
1,645,766 - -2.1
1,645,766 - -1.5
1,645,766 - +0.8
1,645,766 - -0.2
1,645,766 - +0.4
1,645,766 - -0.0
1,645,766 - +1.4
1,645,766 - +0.5
1,645,766 - +1.4
1,645,766 - +0.1
1,645,766 - -0.9
1,645,786 - -0.5
1,645,847 + -0.1
1,645,848 - +0.8
1,645,857 + +1.2
1,645,885 - -0.5
1,645,885 - +0.5
1,645,885 - +1.4

Or see this region's nucleotide sequence