Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1288

Experiment: KB with Trimethoprim 125 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Trimethoprim 125 ug/ml
1,452,075	-				+1.4
1,452,254	-				-1.5
1,452,258	+				-1.5
1,452,258	+				-1.3
1,452,258	+				-0.5
1,452,258	+				+0.2
1,452,258	+				-1.0
1,452,259	-				-0.5
1,452,259	-				+0.9
1,452,259	-				-2.2
1,452,259	-				-1.9
1,452,259	-				+0.8
1,452,293	+				+0.7
1,452,293	+				+0.8
1,452,365	+		Psyr_1287	0.27	-0.3
1,452,367	+		Psyr_1287	0.27	+0.2
1,452,367	+		Psyr_1287	0.27	+2.4
1,452,367	+		Psyr_1287	0.27	-0.7
1,452,367	+		Psyr_1287	0.27	-0.8
1,452,367	+		Psyr_1287	0.27	-1.2
1,452,367	+		Psyr_1287	0.27	-0.5
1,452,367	+		Psyr_1287	0.27	-1.4
1,452,367	+		Psyr_1287	0.27	+0.8
1,452,367	+		Psyr_1287	0.27	+0.7
1,452,367	+		Psyr_1287	0.27	-1.5
1,452,368	-		Psyr_1287	0.27	-1.2
1,452,368	-		Psyr_1287	0.27	-0.8
1,452,368	-		Psyr_1287	0.27	-0.7
1,452,368	-		Psyr_1287	0.27	-2.2
1,452,368	-		Psyr_1287	0.27	-0.6
1,452,368	-		Psyr_1287	0.27	-3.7
1,452,368	-		Psyr_1287	0.27	+0.1
1,452,371	+		Psyr_1287	0.28	-0.6
1,452,371	+		Psyr_1287	0.28	+0.1
1,452,372	-		Psyr_1287	0.28	-2.1
1,452,399	+		Psyr_1287	0.35	-1.0
1,452,425	-		Psyr_1287	0.42	+0.8
1,452,425	-		Psyr_1287	0.42	-0.5
1,452,532	+		Psyr_1287	0.68	+0.6
1,452,629	-				+0.8
1,452,768	+				+1.0
1,452,768	+				-1.1
1,452,768	+				-0.5
1,452,768	+				-0.6
1,452,769	-				+0.8
1,452,769	-				+1.2
1,452,769	-				+0.8
1,452,769	-				-1.1
1,452,812	+				-0.1
1,452,835	+				-0.0
1,452,835	+				+0.0
1,452,835	+				+0.4
1,452,835	+				+0.3
1,452,835	+				+1.9
1,452,835	+				-1.1
1,452,836	-				-0.5
1,452,836	-				-1.2
1,452,853	-				+0.2
1,452,853	-				+0.5
1,452,881	-				+0.3
1,452,972	+				-0.5
1,453,008	-				+0.5
1,453,008	-				+0.1
1,453,024	+				-1.7
1,453,135	+		Psyr_1288	0.11	+1.0
1,453,136	-		Psyr_1288	0.11	-0.3
1,453,235	+		Psyr_1288	0.25	-2.9
1,453,235	+		Psyr_1288	0.25	-2.8
1,453,238	+		Psyr_1288	0.25	-0.2
1,453,238	+		Psyr_1288	0.25	-0.2
1,453,238	+		Psyr_1288	0.25	+0.8
1,453,239	-		Psyr_1288	0.25	+0.1
1,453,239	-		Psyr_1288	0.25	-1.8
1,453,239	-		Psyr_1288	0.25	-2.1
1,453,239	-		Psyr_1288	0.25	-0.6
1,453,244	-		Psyr_1288	0.26	-0.6
1,453,292	+		Psyr_1288	0.33	-0.2
1,453,292	+		Psyr_1288	0.33	-2.0
1,453,292	+		Psyr_1288	0.33	+0.0
1,453,293	-		Psyr_1288	0.33	+0.4
1,453,312	+		Psyr_1288	0.36	-0.2
1,453,364	-		Psyr_1288	0.43	-2.3
1,453,450	-		Psyr_1288	0.55	-0.9
1,453,520	-		Psyr_1288	0.64	-1.5
1,453,538	+		Psyr_1288	0.67	+0.6
1,453,539	-		Psyr_1288	0.67	-0.1
1,453,544	+		Psyr_1288	0.68	-0.0
1,453,577	-		Psyr_1288	0.72	-0.6
1,453,652	+		Psyr_1288	0.83	+0.1
1,453,749	-				-1.6
1,453,749	-				-0.2
1,453,749	-				-1.5
1,453,749	-				+0.0
1,453,775	+				+2.0
1,453,903	+				-0.1
1,453,903	+				+0.3
1,453,903	+				-0.4
1,453,903	+				-0.2
1,453,903	+				-2.7
1,453,903	+				+2.8
1,453,903	+				+0.3
1,453,904	-				+0.3
1,453,904	-				-0.4
1,453,904	-				-0.2
1,453,904	-				+1.3
1,453,930	+				-2.2
1,453,981	+				+1.2
1,453,982	-				+0.5
1,454,730	+				-0.2
1,454,730	+				+0.6