Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1286

Experiment: KB with Trimethoprim 125 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1284 and Psyr_1285 are separated by 44 nucleotidesPsyr_1285 and Psyr_1286 are separated by 103 nucleotidesPsyr_1286 and Psyr_1287 are separated by 330 nucleotides Psyr_1284: Psyr_1284 - tRNA (Guanine37-N(1)-) methyltransferase, at 1,449,781 to 1,450,533 _1284 Psyr_1285: Psyr_1285 - LSU ribosomal protein L19P, at 1,450,578 to 1,450,928 _1285 Psyr_1286: Psyr_1286 - tyrosine recombinase XerD subunit, at 1,451,032 to 1,451,928 _1286 Psyr_1287: Psyr_1287 - hypothetical protein, at 1,452,259 to 1,452,657 _1287 Position (kb) 1451 1452Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1450.876 kb on - strand, within Psyr_1285at 1451.028 kb on - strandat 1451.028 kb on - strandat 1451.233 kb on + strand, within Psyr_1286at 1451.233 kb on + strand, within Psyr_1286at 1451.233 kb on + strand, within Psyr_1286at 1451.234 kb on - strand, within Psyr_1286at 1451.234 kb on - strand, within Psyr_1286at 1451.234 kb on - strand, within Psyr_1286at 1451.236 kb on - strand, within Psyr_1286at 1451.236 kb on - strand, within Psyr_1286at 1451.281 kb on + strand, within Psyr_1286at 1451.282 kb on - strand, within Psyr_1286at 1451.287 kb on + strand, within Psyr_1286at 1451.287 kb on + strand, within Psyr_1286at 1451.287 kb on + strand, within Psyr_1286at 1451.461 kb on + strand, within Psyr_1286at 1451.461 kb on + strand, within Psyr_1286at 1451.461 kb on + strand, within Psyr_1286at 1451.461 kb on + strand, within Psyr_1286at 1451.461 kb on + strand, within Psyr_1286at 1451.461 kb on + strand, within Psyr_1286at 1451.461 kb on + strand, within Psyr_1286at 1451.462 kb on - strand, within Psyr_1286at 1451.462 kb on - strand, within Psyr_1286at 1451.462 kb on - strand, within Psyr_1286at 1451.462 kb on - strand, within Psyr_1286at 1451.608 kb on + strand, within Psyr_1286at 1451.866 kb on + strandat 1451.866 kb on + strandat 1451.866 kb on + strandat 1451.866 kb on + strandat 1451.866 kb on + strandat 1451.866 kb on + strandat 1451.866 kb on + strandat 1451.867 kb on - strandat 1451.867 kb on - strandat 1451.867 kb on - strandat 1451.867 kb on - strandat 1451.867 kb on - strandat 1451.991 kb on + strandat 1451.992 kb on - strandat 1451.999 kb on + strandat 1451.999 kb on + strandat 1452.000 kb on - strandat 1452.000 kb on - strandat 1452.000 kb on - strandat 1452.020 kb on + strandat 1452.024 kb on + strandat 1452.024 kb on + strandat 1452.025 kb on - strandat 1452.025 kb on - strandat 1452.025 kb on - strandat 1452.051 kb on - strandat 1452.075 kb on - strandat 1452.254 kb on - strandat 1452.258 kb on + strandat 1452.258 kb on + strandat 1452.258 kb on + strandat 1452.258 kb on + strandat 1452.258 kb on + strandat 1452.259 kb on - strandat 1452.259 kb on - strandat 1452.259 kb on - strandat 1452.259 kb on - strandat 1452.259 kb on - strandat 1452.293 kb on + strandat 1452.293 kb on + strandat 1452.365 kb on + strand, within Psyr_1287at 1452.367 kb on + strand, within Psyr_1287at 1452.367 kb on + strand, within Psyr_1287at 1452.367 kb on + strand, within Psyr_1287at 1452.367 kb on + strand, within Psyr_1287at 1452.367 kb on + strand, within Psyr_1287at 1452.367 kb on + strand, within Psyr_1287at 1452.367 kb on + strand, within Psyr_1287at 1452.367 kb on + strand, within Psyr_1287at 1452.367 kb on + strand, within Psyr_1287at 1452.367 kb on + strand, within Psyr_1287at 1452.368 kb on - strand, within Psyr_1287at 1452.368 kb on - strand, within Psyr_1287at 1452.368 kb on - strand, within Psyr_1287at 1452.368 kb on - strand, within Psyr_1287at 1452.368 kb on - strand, within Psyr_1287at 1452.368 kb on - strand, within Psyr_1287at 1452.368 kb on - strand, within Psyr_1287at 1452.371 kb on + strand, within Psyr_1287at 1452.371 kb on + strand, within Psyr_1287at 1452.372 kb on - strand, within Psyr_1287at 1452.399 kb on + strand, within Psyr_1287at 1452.425 kb on - strand, within Psyr_1287at 1452.425 kb on - strand, within Psyr_1287at 1452.532 kb on + strand, within Psyr_1287at 1452.629 kb on - strandat 1452.768 kb on + strandat 1452.768 kb on + strandat 1452.768 kb on + strandat 1452.768 kb on + strandat 1452.769 kb on - strandat 1452.769 kb on - strandat 1452.769 kb on - strandat 1452.769 kb on - strandat 1452.812 kb on + strandat 1452.835 kb on + strandat 1452.835 kb on + strandat 1452.835 kb on + strandat 1452.835 kb on + strandat 1452.835 kb on + strandat 1452.835 kb on + strandat 1452.836 kb on - strandat 1452.836 kb on - strandat 1452.853 kb on - strandat 1452.853 kb on - strandat 1452.881 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Trimethoprim 125 ug/ml
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1,450,876 - Psyr_1285 0.85 +0.2
1,451,028 - +0.8
1,451,028 - -0.8
1,451,233 + Psyr_1286 0.22 +1.1
1,451,233 + Psyr_1286 0.22 -0.9
1,451,233 + Psyr_1286 0.22 +0.1
1,451,234 - Psyr_1286 0.23 -0.3
1,451,234 - Psyr_1286 0.23 -0.0
1,451,234 - Psyr_1286 0.23 -0.8
1,451,236 - Psyr_1286 0.23 +0.5
1,451,236 - Psyr_1286 0.23 -0.5
1,451,281 + Psyr_1286 0.28 -0.3
1,451,282 - Psyr_1286 0.28 +0.4
1,451,287 + Psyr_1286 0.28 +2.6
1,451,287 + Psyr_1286 0.28 -1.1
1,451,287 + Psyr_1286 0.28 +0.0
1,451,461 + Psyr_1286 0.48 -2.5
1,451,461 + Psyr_1286 0.48 +0.4
1,451,461 + Psyr_1286 0.48 -0.3
1,451,461 + Psyr_1286 0.48 -0.6
1,451,461 + Psyr_1286 0.48 -1.1
1,451,461 + Psyr_1286 0.48 -1.3
1,451,461 + Psyr_1286 0.48 -0.8
1,451,462 - Psyr_1286 0.48 -2.2
1,451,462 - Psyr_1286 0.48 -0.9
1,451,462 - Psyr_1286 0.48 -0.2
1,451,462 - Psyr_1286 0.48 +0.8
1,451,608 + Psyr_1286 0.64 -1.9
1,451,866 + -1.0
1,451,866 + +0.1
1,451,866 + -1.5
1,451,866 + +0.2
1,451,866 + +0.1
1,451,866 + -0.6
1,451,866 + +0.8
1,451,867 - +0.8
1,451,867 - +0.6
1,451,867 - -0.3
1,451,867 - +0.1
1,451,867 - -0.1
1,451,991 + +1.2
1,451,992 - +0.8
1,451,999 + -0.2
1,451,999 + -0.2
1,452,000 - -0.5
1,452,000 - +0.1
1,452,000 - +0.6
1,452,020 + -0.4
1,452,024 + -0.4
1,452,024 + -0.7
1,452,025 - -0.4
1,452,025 - -0.9
1,452,025 - -0.9
1,452,051 - -0.4
1,452,075 - +1.4
1,452,254 - -1.5
1,452,258 + -1.5
1,452,258 + -1.3
1,452,258 + -0.5
1,452,258 + +0.2
1,452,258 + -1.0
1,452,259 - -0.5
1,452,259 - +0.9
1,452,259 - -2.2
1,452,259 - -1.9
1,452,259 - +0.8
1,452,293 + +0.7
1,452,293 + +0.8
1,452,365 + Psyr_1287 0.27 -0.3
1,452,367 + Psyr_1287 0.27 +0.2
1,452,367 + Psyr_1287 0.27 +2.4
1,452,367 + Psyr_1287 0.27 -0.7
1,452,367 + Psyr_1287 0.27 -0.8
1,452,367 + Psyr_1287 0.27 -1.2
1,452,367 + Psyr_1287 0.27 -0.5
1,452,367 + Psyr_1287 0.27 -1.4
1,452,367 + Psyr_1287 0.27 +0.8
1,452,367 + Psyr_1287 0.27 +0.7
1,452,367 + Psyr_1287 0.27 -1.5
1,452,368 - Psyr_1287 0.27 -1.2
1,452,368 - Psyr_1287 0.27 -0.8
1,452,368 - Psyr_1287 0.27 -0.7
1,452,368 - Psyr_1287 0.27 -2.2
1,452,368 - Psyr_1287 0.27 -0.6
1,452,368 - Psyr_1287 0.27 -3.7
1,452,368 - Psyr_1287 0.27 +0.1
1,452,371 + Psyr_1287 0.28 -0.6
1,452,371 + Psyr_1287 0.28 +0.1
1,452,372 - Psyr_1287 0.28 -2.1
1,452,399 + Psyr_1287 0.35 -1.0
1,452,425 - Psyr_1287 0.42 +0.8
1,452,425 - Psyr_1287 0.42 -0.5
1,452,532 + Psyr_1287 0.68 +0.6
1,452,629 - +0.8
1,452,768 + +1.0
1,452,768 + -1.1
1,452,768 + -0.5
1,452,768 + -0.6
1,452,769 - +0.8
1,452,769 - +1.2
1,452,769 - +0.8
1,452,769 - -1.1
1,452,812 + -0.1
1,452,835 + -0.0
1,452,835 + +0.0
1,452,835 + +0.4
1,452,835 + +0.3
1,452,835 + +1.9
1,452,835 + -1.1
1,452,836 - -0.5
1,452,836 - -1.2
1,452,853 - +0.2
1,452,853 - +0.5
1,452,881 - +0.3

Or see this region's nucleotide sequence