Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1245

Experiment: KB with Trimethoprim 125 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1242 and Psyr_1243 are separated by 14 nucleotidesPsyr_1243 and Psyr_1244 are separated by 96 nucleotidesPsyr_1244 and Psyr_1245 are separated by 33 nucleotidesPsyr_1245 and Psyr_1246 are separated by 26 nucleotidesPsyr_1246 and Psyr_1247 overlap by 1 nucleotides Psyr_1242: Psyr_1242 - Ferredoxin, 2Fe-2S type, at 1,399,292 to 1,399,633 _1242 Psyr_1243: Psyr_1243 - Protein of unknown function DUF528, at 1,399,648 to 1,399,848 _1243 Psyr_1244: Psyr_1244 - nucleoside diphosphate kinase, at 1,399,945 to 1,400,370 _1244 Psyr_1245: Psyr_1245 - 23S rRNA m(2)A-2503 methyltransferase, at 1,400,404 to 1,401,552 _1245 Psyr_1246: Psyr_1246 - TPR repeat protein:TPR repeat protein, at 1,401,579 to 1,402,337 _1246 Psyr_1247: Psyr_1247 - conserved hypothetical protein, at 1,402,337 to 1,403,341 _1247 Position (kb) 1400 1401 1402Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1399.712 kb on + strand, within Psyr_1243at 1399.713 kb on - strandat 1399.713 kb on - strand, within Psyr_1243at 1399.876 kb on + strandat 1399.876 kb on + strandat 1399.876 kb on + strandat 1399.876 kb on + strandat 1399.877 kb on - strandat 1399.877 kb on - strandat 1399.877 kb on - strandat 1399.892 kb on + strandat 1399.894 kb on + strandat 1399.894 kb on + strandat 1400.357 kb on + strandat 1400.368 kb on + strandat 1400.475 kb on + strandat 1400.653 kb on - strand, within Psyr_1245at 1400.669 kb on + strand, within Psyr_1245at 1400.669 kb on + strand, within Psyr_1245at 1400.698 kb on + strand, within Psyr_1245at 1400.698 kb on + strand, within Psyr_1245at 1400.698 kb on + strand, within Psyr_1245at 1400.699 kb on - strand, within Psyr_1245at 1400.699 kb on - strand, within Psyr_1245at 1400.699 kb on - strand, within Psyr_1245at 1400.700 kb on + strand, within Psyr_1245at 1400.701 kb on - strand, within Psyr_1245at 1400.977 kb on + strand, within Psyr_1245at 1401.010 kb on - strand, within Psyr_1245at 1401.023 kb on + strand, within Psyr_1245at 1401.166 kb on + strand, within Psyr_1245at 1401.166 kb on + strand, within Psyr_1245at 1401.167 kb on - strand, within Psyr_1245at 1401.167 kb on - strand, within Psyr_1245at 1401.167 kb on - strand, within Psyr_1245at 1401.167 kb on - strand, within Psyr_1245at 1401.208 kb on + strand, within Psyr_1245at 1401.239 kb on + strand, within Psyr_1245at 1401.239 kb on + strand, within Psyr_1245at 1401.240 kb on - strand, within Psyr_1245at 1401.329 kb on - strand, within Psyr_1245at 1401.389 kb on - strand, within Psyr_1245at 1401.390 kb on + strand, within Psyr_1245at 1401.390 kb on + strand, within Psyr_1245at 1401.391 kb on - strand, within Psyr_1245at 1401.391 kb on - strand, within Psyr_1245at 1401.487 kb on + strandat 1401.487 kb on + strandat 1401.487 kb on + strandat 1401.487 kb on + strandat 1401.488 kb on - strandat 1401.488 kb on - strandat 1401.488 kb on - strandat 1401.488 kb on - strandat 1401.488 kb on - strandat 1401.488 kb on - strandat 1401.489 kb on + strandat 1401.489 kb on + strandat 1401.489 kb on + strandat 1401.489 kb on + strandat 1401.489 kb on + strandat 1401.489 kb on + strandat 1401.489 kb on + strandat 1401.490 kb on - strandat 1401.490 kb on - strandat 1401.490 kb on - strandat 1401.490 kb on - strandat 1401.490 kb on - strandat 1401.490 kb on - strandat 1401.490 kb on - strandat 1401.491 kb on + strandat 1401.491 kb on + strandat 1401.491 kb on + strandat 1401.491 kb on + strandat 1401.491 kb on + strandat 1401.492 kb on - strandat 1401.492 kb on - strandat 1401.492 kb on - strandat 1401.492 kb on - strandat 1401.696 kb on + strand, within Psyr_1246at 1401.696 kb on + strand, within Psyr_1246at 1401.696 kb on + strand, within Psyr_1246at 1401.696 kb on + strand, within Psyr_1246at 1401.697 kb on - strand, within Psyr_1246at 1401.951 kb on + strand, within Psyr_1246at 1402.149 kb on + strand, within Psyr_1246at 1402.149 kb on + strand, within Psyr_1246at 1402.149 kb on + strand, within Psyr_1246at 1402.149 kb on + strand, within Psyr_1246at 1402.149 kb on + strand, within Psyr_1246at 1402.149 kb on + strand, within Psyr_1246at 1402.149 kb on + strand, within Psyr_1246at 1402.149 kb on + strand, within Psyr_1246at 1402.149 kb on + strand, within Psyr_1246at 1402.149 kb on + strand, within Psyr_1246at 1402.149 kb on + strand, within Psyr_1246at 1402.149 kb on + strand, within Psyr_1246at 1402.149 kb on + strand, within Psyr_1246at 1402.149 kb on + strand, within Psyr_1246at 1402.149 kb on + strand, within Psyr_1246at 1402.149 kb on + strand, within Psyr_1246at 1402.149 kb on + strand, within Psyr_1246at 1402.149 kb on + strand, within Psyr_1246at 1402.149 kb on + strand, within Psyr_1246at 1402.149 kb on + strand, within Psyr_1246at 1402.149 kb on + strand, within Psyr_1246at 1402.149 kb on + strand, within Psyr_1246at 1402.149 kb on + strand, within Psyr_1246at 1402.167 kb on + strand, within Psyr_1246at 1402.170 kb on + strand, within Psyr_1246at 1402.213 kb on + strand, within Psyr_1246at 1402.240 kb on + strand, within Psyr_1246at 1402.240 kb on + strand, within Psyr_1246at 1402.240 kb on + strand, within Psyr_1246at 1402.240 kb on + strand, within Psyr_1246at 1402.240 kb on + strand, within Psyr_1246at 1402.240 kb on + strand, within Psyr_1246at 1402.240 kb on + strand, within Psyr_1246at 1402.240 kb on + strand, within Psyr_1246at 1402.240 kb on + strand, within Psyr_1246at 1402.240 kb on + strand, within Psyr_1246at 1402.241 kb on - strand, within Psyr_1246at 1402.241 kb on - strand, within Psyr_1246at 1402.241 kb on - strand, within Psyr_1246at 1402.241 kb on - strand, within Psyr_1246at 1402.241 kb on - strand, within Psyr_1246at 1402.241 kb on - strand, within Psyr_1246at 1402.242 kb on + strand, within Psyr_1246at 1402.242 kb on + strand, within Psyr_1246at 1402.242 kb on + strand, within Psyr_1246at 1402.242 kb on + strand, within Psyr_1246at 1402.242 kb on + strand, within Psyr_1246at 1402.242 kb on + strand, within Psyr_1246at 1402.242 kb on + strand, within Psyr_1246at 1402.242 kb on + strand, within Psyr_1246at 1402.242 kb on + strand, within Psyr_1246at 1402.242 kb on + strand, within Psyr_1246at 1402.242 kb on + strand, within Psyr_1246at 1402.242 kb on + strand, within Psyr_1246at 1402.242 kb on + strand, within Psyr_1246at 1402.242 kb on + strand, within Psyr_1246at 1402.320 kb on + strandat 1402.320 kb on + strandat 1402.362 kb on + strandat 1402.362 kb on + strandat 1402.513 kb on + strand, within Psyr_1247at 1402.513 kb on + strand, within Psyr_1247at 1402.529 kb on + strand, within Psyr_1247

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Trimethoprim 125 ug/ml
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1,399,712 + Psyr_1243 0.32 +0.6
1,399,713 - -1.5
1,399,713 - Psyr_1243 0.32 -0.2
1,399,876 + -0.2
1,399,876 + +0.0
1,399,876 + -0.3
1,399,876 + +1.1
1,399,877 - +0.4
1,399,877 - +0.8
1,399,877 - -0.5
1,399,892 + -1.8
1,399,894 + +0.4
1,399,894 + -0.6
1,400,357 + -0.0
1,400,368 + -0.7
1,400,475 + -2.7
1,400,653 - Psyr_1245 0.22 -0.4
1,400,669 + Psyr_1245 0.23 +0.5
1,400,669 + Psyr_1245 0.23 -1.5
1,400,698 + Psyr_1245 0.26 +0.9
1,400,698 + Psyr_1245 0.26 +1.1
1,400,698 + Psyr_1245 0.26 -0.2
1,400,699 - Psyr_1245 0.26 -1.1
1,400,699 - Psyr_1245 0.26 -0.2
1,400,699 - Psyr_1245 0.26 -1.2
1,400,700 + Psyr_1245 0.26 -1.5
1,400,701 - Psyr_1245 0.26 -0.6
1,400,977 + Psyr_1245 0.50 -0.5
1,401,010 - Psyr_1245 0.53 -0.5
1,401,023 + Psyr_1245 0.54 +0.2
1,401,166 + Psyr_1245 0.66 -0.8
1,401,166 + Psyr_1245 0.66 -0.2
1,401,167 - Psyr_1245 0.66 -0.8
1,401,167 - Psyr_1245 0.66 -1.5
1,401,167 - Psyr_1245 0.66 -1.4
1,401,167 - Psyr_1245 0.66 -1.5
1,401,208 + Psyr_1245 0.70 -0.5
1,401,239 + Psyr_1245 0.73 -1.2
1,401,239 + Psyr_1245 0.73 -0.8
1,401,240 - Psyr_1245 0.73 -1.5
1,401,329 - Psyr_1245 0.81 +0.8
1,401,389 - Psyr_1245 0.86 -1.2
1,401,390 + Psyr_1245 0.86 -0.5
1,401,390 + Psyr_1245 0.86 -0.5
1,401,391 - Psyr_1245 0.86 -0.2
1,401,391 - Psyr_1245 0.86 -2.3
1,401,487 + +0.1
1,401,487 + +0.9
1,401,487 + -0.2
1,401,487 + -0.6
1,401,488 - -0.2
1,401,488 - +0.2
1,401,488 - -0.2
1,401,488 - -1.5
1,401,488 - -0.8
1,401,488 - +0.1
1,401,489 + +0.7
1,401,489 + +0.1
1,401,489 + +0.2
1,401,489 + +0.2
1,401,489 + +0.1
1,401,489 + +0.4
1,401,489 + +0.1
1,401,490 - +0.2
1,401,490 - +0.8
1,401,490 - +0.8
1,401,490 - -1.8
1,401,490 - -0.2
1,401,490 - -2.1
1,401,490 - -0.4
1,401,491 + +0.8
1,401,491 + +0.4
1,401,491 + +0.5
1,401,491 + +1.1
1,401,491 + +1.3
1,401,492 - +0.2
1,401,492 - +1.5
1,401,492 - +1.0
1,401,492 - -0.9
1,401,696 + Psyr_1246 0.15 +1.1
1,401,696 + Psyr_1246 0.15 +0.1
1,401,696 + Psyr_1246 0.15 -0.9
1,401,696 + Psyr_1246 0.15 +0.7
1,401,697 - Psyr_1246 0.16 -1.2
1,401,951 + Psyr_1246 0.49 -1.5
1,402,149 + Psyr_1246 0.75 +2.1
1,402,149 + Psyr_1246 0.75 -1.3
1,402,149 + Psyr_1246 0.75 +0.1
1,402,149 + Psyr_1246 0.75 +0.5
1,402,149 + Psyr_1246 0.75 +1.4
1,402,149 + Psyr_1246 0.75 -0.1
1,402,149 + Psyr_1246 0.75 +0.8
1,402,149 + Psyr_1246 0.75 +0.3
1,402,149 + Psyr_1246 0.75 -1.9
1,402,149 + Psyr_1246 0.75 -0.6
1,402,149 + Psyr_1246 0.75 +0.4
1,402,149 + Psyr_1246 0.75 +0.3
1,402,149 + Psyr_1246 0.75 +0.4
1,402,149 + Psyr_1246 0.75 +1.4
1,402,149 + Psyr_1246 0.75 +0.5
1,402,149 + Psyr_1246 0.75 +0.8
1,402,149 + Psyr_1246 0.75 +0.1
1,402,149 + Psyr_1246 0.75 +2.8
1,402,149 + Psyr_1246 0.75 -0.8
1,402,149 + Psyr_1246 0.75 +0.4
1,402,149 + Psyr_1246 0.75 -1.1
1,402,149 + Psyr_1246 0.75 +0.2
1,402,149 + Psyr_1246 0.75 -0.2
1,402,167 + Psyr_1246 0.77 -1.1
1,402,170 + Psyr_1246 0.78 +0.1
1,402,213 + Psyr_1246 0.84 -0.3
1,402,240 + Psyr_1246 0.87 -0.1
1,402,240 + Psyr_1246 0.87 +0.4
1,402,240 + Psyr_1246 0.87 +1.1
1,402,240 + Psyr_1246 0.87 -0.0
1,402,240 + Psyr_1246 0.87 +0.3
1,402,240 + Psyr_1246 0.87 -0.8
1,402,240 + Psyr_1246 0.87 +3.1
1,402,240 + Psyr_1246 0.87 -0.6
1,402,240 + Psyr_1246 0.87 +0.1
1,402,240 + Psyr_1246 0.87 -0.9
1,402,241 - Psyr_1246 0.87 -1.5
1,402,241 - Psyr_1246 0.87 +0.1
1,402,241 - Psyr_1246 0.87 -0.2
1,402,241 - Psyr_1246 0.87 -0.5
1,402,241 - Psyr_1246 0.87 -1.5
1,402,241 - Psyr_1246 0.87 +0.5
1,402,242 + Psyr_1246 0.87 -0.1
1,402,242 + Psyr_1246 0.87 -0.1
1,402,242 + Psyr_1246 0.87 +1.8
1,402,242 + Psyr_1246 0.87 +0.4
1,402,242 + Psyr_1246 0.87 -0.8
1,402,242 + Psyr_1246 0.87 -0.4
1,402,242 + Psyr_1246 0.87 +0.1
1,402,242 + Psyr_1246 0.87 +0.2
1,402,242 + Psyr_1246 0.87 +0.5
1,402,242 + Psyr_1246 0.87 -1.0
1,402,242 + Psyr_1246 0.87 -2.2
1,402,242 + Psyr_1246 0.87 +0.9
1,402,242 + Psyr_1246 0.87 -0.5
1,402,242 + Psyr_1246 0.87 +0.7
1,402,320 + -0.2
1,402,320 + +1.6
1,402,362 + -0.8
1,402,362 + +0.5
1,402,513 + Psyr_1247 0.18 +0.1
1,402,513 + Psyr_1247 0.18 -1.2
1,402,529 + Psyr_1247 0.19 +1.8

Or see this region's nucleotide sequence