Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1112

Experiment: KB with Trimethoprim 125 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Trimethoprim 125 ug/ml
1,258,676	+		Psyr_1110	0.80	-0.8
1,258,676	+		Psyr_1110	0.80	+0.4
1,258,676	+		Psyr_1110	0.80	+0.5
1,258,677	-		Psyr_1110	0.80	-0.4
1,258,677	-		Psyr_1110	0.80	+0.4
1,258,677	-		Psyr_1110	0.80	-2.5
1,258,677	-		Psyr_1110	0.80	-1.0
1,258,677	-		Psyr_1110	0.80	+0.8
1,258,677	-		Psyr_1110	0.80	-1.2
1,258,677	-		Psyr_1110	0.80	-0.1
1,258,677	-		Psyr_1110	0.80	-0.0
1,258,679	-		Psyr_1110	0.80	+0.2
1,258,706	-		Psyr_1110	0.83	-0.7
1,258,769	+		Psyr_1110	0.90	-0.0
1,258,808	+				-0.3
1,258,879	+				-0.7
1,258,880	-				-0.7
1,258,880	-				-0.4
1,258,933	-				-0.6
1,258,987	+				+0.8
1,258,987	+				+0.7
1,258,987	+				+1.8
1,258,987	+				+0.1
1,258,987	+				-0.1
1,258,987	+				-0.0
1,258,987	+				-1.5
1,258,987	+				-1.0
1,258,987	+				+0.2
1,258,988	-				-2.5
1,258,988	-				+0.3
1,258,988	-				-0.4
1,258,988	-				-0.0
1,259,230	+		Psyr_1111	0.42	-0.8
1,259,231	-		Psyr_1111	0.42	+0.2
1,259,589	+				-0.3
1,259,653	+				+0.5
1,259,654	-				+0.1
1,259,654	-				+0.2
1,259,787	+				+0.2
1,259,787	+				-0.0
1,259,787	+				+0.8
1,259,787	+				-0.3
1,259,787	+				-1.0
1,259,788	-				-0.9
1,259,788	-				-0.3
1,259,788	-				-0.2
1,259,788	-				-0.7
1,259,861	+		Psyr_1112	0.13	+0.4
1,259,910	+		Psyr_1112	0.16	+0.9
1,259,910	+		Psyr_1112	0.16	+0.1
1,259,918	-		Psyr_1112	0.17	+0.6
1,260,143	+		Psyr_1112	0.32	+0.7
1,260,218	+		Psyr_1112	0.38	-0.9
1,260,218	+		Psyr_1112	0.38	+0.4
1,260,218	+		Psyr_1112	0.38	+1.8
1,260,218	+		Psyr_1112	0.38	+0.8
1,260,219	-		Psyr_1112	0.38	-0.2
1,260,219	-		Psyr_1112	0.38	+0.8
1,260,219	-		Psyr_1112	0.38	+0.8
1,260,246	-		Psyr_1112	0.40	+0.7
1,260,246	-		Psyr_1112	0.40	+0.0
1,260,246	-		Psyr_1112	0.40	+0.9
1,260,270	+		Psyr_1112	0.41	-0.2
1,260,270	+		Psyr_1112	0.41	+0.1
1,260,685	+		Psyr_1112	0.70	+0.8
1,260,685	+		Psyr_1112	0.70	-1.5
1,260,791	+		Psyr_1112	0.77	-0.0
1,260,855	-		Psyr_1112	0.81	+0.5
1,261,100	+				+0.3
1,261,100	+				+0.8
1,261,100	+				+1.7
1,261,100	+				+1.0
1,261,101	-				-2.0
1,261,101	-				+0.3
1,261,166	+				-0.8
1,261,167	-				+0.6
1,261,270	+				-1.5
1,261,270	+				+0.4
1,261,270	+				+0.6
1,261,270	+				-0.8
1,261,271	-				-0.8
1,261,271	-				+1.8
1,261,271	-				-0.6
1,261,698	+		Psyr_1113	0.31	+0.3
1,261,699	-		Psyr_1113	0.31	-0.3
1,261,699	-		Psyr_1113	0.31	-0.2
1,261,710	+		Psyr_1113	0.32	+1.0
1,261,711	-		Psyr_1113	0.32	+0.8
1,261,802	+		Psyr_1113	0.39	+0.2
1,261,938	+		Psyr_1113	0.50	+0.8
1,262,028	+		Psyr_1113	0.57	-0.3
1,262,028	+		Psyr_1113	0.57	+0.5
1,262,028	+		Psyr_1113	0.57	-0.2
1,262,028	+		Psyr_1113	0.57	-0.2
1,262,028	+		Psyr_1113	0.57	+0.6
1,262,028	+		Psyr_1113	0.57	-1.8
1,262,028	+		Psyr_1113	0.57	-0.1
1,262,028	+		Psyr_1113	0.57	-0.5
1,262,028	+		Psyr_1113	0.57	+1.3
1,262,028	+		Psyr_1113	0.57	+0.8
1,262,028	+		Psyr_1113	0.57	+0.6
1,262,028	+		Psyr_1113	0.57	+1.8
1,262,028	+		Psyr_1113	0.57	+1.4
1,262,028	+		Psyr_1113	0.57	+0.9
1,262,028	+		Psyr_1113	0.57	+1.0
1,262,029	-		Psyr_1113	0.57	+0.8
1,262,029	-		Psyr_1113	0.57	-0.2
1,262,029	-		Psyr_1113	0.57	-0.3
1,262,029	-		Psyr_1113	0.57	+1.0
1,262,029	-		Psyr_1113	0.57	-1.5
1,262,029	-		Psyr_1113	0.57	+0.5
1,262,029	-		Psyr_1113	0.57	-1.1
1,262,029	-		Psyr_1113	0.57	-0.6