Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1073

Experiment: KB with Trimethoprim 125 ug/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_1072 and Psyr_1073 are separated by 70 nucleotidesPsyr_1073 and Psyr_1074 are separated by 10 nucleotides Psyr_1072: Psyr_1072 - amino acid ABC transporter substrate-binding protein, PAAT family, at 1,214,948 to 1,215,976 _1072 Psyr_1073: Psyr_1073 - amino acid ABC transporter membrane protein 1, PAAT family, at 1,216,047 to 1,217,228 _1073 Psyr_1074: Psyr_1074 - amino acid ABC transporter membrane protein 2, PAAT family, at 1,217,239 to 1,218,336 _1074 Position (kb) 1216 1217 1218Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1215.110 kb on - strand, within Psyr_1072at 1215.166 kb on - strand, within Psyr_1072at 1215.320 kb on + strand, within Psyr_1072at 1215.320 kb on + strand, within Psyr_1072at 1215.320 kb on + strand, within Psyr_1072at 1215.320 kb on + strand, within Psyr_1072at 1215.320 kb on + strand, within Psyr_1072at 1215.320 kb on + strand, within Psyr_1072at 1215.323 kb on + strand, within Psyr_1072at 1215.324 kb on - strand, within Psyr_1072at 1215.324 kb on - strand, within Psyr_1072at 1215.332 kb on - strand, within Psyr_1072at 1215.346 kb on - strand, within Psyr_1072at 1215.346 kb on - strand, within Psyr_1072at 1215.441 kb on - strand, within Psyr_1072at 1215.464 kb on + strand, within Psyr_1072at 1215.465 kb on - strand, within Psyr_1072at 1215.465 kb on - strand, within Psyr_1072at 1215.465 kb on - strand, within Psyr_1072at 1215.531 kb on + strand, within Psyr_1072at 1215.532 kb on - strand, within Psyr_1072at 1215.593 kb on + strand, within Psyr_1072at 1215.593 kb on + strand, within Psyr_1072at 1215.593 kb on + strand, within Psyr_1072at 1215.594 kb on - strand, within Psyr_1072at 1215.594 kb on - strand, within Psyr_1072at 1215.594 kb on - strand, within Psyr_1072at 1215.594 kb on - strand, within Psyr_1072at 1215.594 kb on - strand, within Psyr_1072at 1215.778 kb on + strand, within Psyr_1072at 1215.796 kb on + strand, within Psyr_1072at 1215.796 kb on + strand, within Psyr_1072at 1215.797 kb on - strand, within Psyr_1072at 1215.800 kb on + strand, within Psyr_1072at 1215.957 kb on - strandat 1215.967 kb on + strandat 1215.967 kb on + strandat 1215.967 kb on + strandat 1215.967 kb on + strandat 1215.967 kb on + strandat 1215.967 kb on + strandat 1215.968 kb on - strandat 1215.968 kb on - strandat 1215.968 kb on - strandat 1216.199 kb on + strand, within Psyr_1073at 1216.200 kb on - strand, within Psyr_1073at 1216.200 kb on - strand, within Psyr_1073at 1216.200 kb on - strand, within Psyr_1073at 1216.200 kb on - strand, within Psyr_1073at 1216.202 kb on + strand, within Psyr_1073at 1216.202 kb on + strand, within Psyr_1073at 1216.266 kb on + strand, within Psyr_1073at 1216.284 kb on + strand, within Psyr_1073at 1216.284 kb on + strand, within Psyr_1073at 1216.284 kb on + strand, within Psyr_1073at 1216.284 kb on + strand, within Psyr_1073at 1216.285 kb on - strand, within Psyr_1073at 1216.285 kb on - strand, within Psyr_1073at 1216.285 kb on - strand, within Psyr_1073at 1216.285 kb on - strand, within Psyr_1073at 1216.285 kb on - strand, within Psyr_1073at 1216.285 kb on - strand, within Psyr_1073at 1216.316 kb on + strand, within Psyr_1073at 1216.425 kb on + strand, within Psyr_1073at 1216.425 kb on + strand, within Psyr_1073at 1216.425 kb on + strand, within Psyr_1073at 1216.425 kb on + strand, within Psyr_1073at 1216.426 kb on - strand, within Psyr_1073at 1216.426 kb on - strand, within Psyr_1073at 1216.426 kb on - strand, within Psyr_1073at 1216.426 kb on - strand, within Psyr_1073at 1216.426 kb on - strand, within Psyr_1073at 1216.486 kb on + strand, within Psyr_1073at 1216.524 kb on + strand, within Psyr_1073at 1216.853 kb on + strand, within Psyr_1073at 1216.854 kb on - strand, within Psyr_1073at 1216.854 kb on - strand, within Psyr_1073at 1216.854 kb on - strand, within Psyr_1073at 1216.857 kb on + strand, within Psyr_1073at 1216.857 kb on + strand, within Psyr_1073at 1216.857 kb on + strand, within Psyr_1073at 1216.857 kb on + strand, within Psyr_1073at 1216.857 kb on + strand, within Psyr_1073at 1216.857 kb on + strand, within Psyr_1073at 1216.857 kb on + strand, within Psyr_1073at 1216.857 kb on + strand, within Psyr_1073at 1216.857 kb on + strand, within Psyr_1073at 1216.857 kb on + strand, within Psyr_1073at 1216.857 kb on + strand, within Psyr_1073at 1216.858 kb on - strand, within Psyr_1073at 1216.858 kb on - strand, within Psyr_1073at 1216.858 kb on - strand, within Psyr_1073at 1216.858 kb on - strand, within Psyr_1073at 1216.858 kb on - strand, within Psyr_1073at 1217.155 kb on - strandat 1217.196 kb on + strandat 1217.196 kb on + strandat 1217.196 kb on + strandat 1217.197 kb on - strandat 1217.197 kb on - strandat 1217.197 kb on - strandat 1217.250 kb on + strandat 1217.250 kb on + strandat 1217.250 kb on + strandat 1217.251 kb on - strandat 1217.251 kb on - strandat 1217.251 kb on - strandat 1217.362 kb on + strand, within Psyr_1074at 1217.362 kb on + strand, within Psyr_1074at 1217.362 kb on + strand, within Psyr_1074at 1217.371 kb on + strand, within Psyr_1074at 1217.371 kb on + strand, within Psyr_1074at 1217.371 kb on + strand, within Psyr_1074at 1217.372 kb on - strand, within Psyr_1074at 1217.372 kb on - strand, within Psyr_1074at 1217.500 kb on + strand, within Psyr_1074at 1217.500 kb on + strand, within Psyr_1074at 1217.500 kb on + strand, within Psyr_1074at 1217.500 kb on + strand, within Psyr_1074at 1217.500 kb on + strand, within Psyr_1074at 1217.500 kb on + strand, within Psyr_1074at 1217.500 kb on + strand, within Psyr_1074at 1217.500 kb on + strand, within Psyr_1074at 1217.500 kb on + strand, within Psyr_1074at 1217.500 kb on + strand, within Psyr_1074at 1217.500 kb on + strand, within Psyr_1074at 1217.500 kb on + strand, within Psyr_1074at 1217.501 kb on - strand, within Psyr_1074at 1217.501 kb on - strand, within Psyr_1074at 1217.501 kb on - strand, within Psyr_1074at 1217.501 kb on - strand, within Psyr_1074at 1217.506 kb on + strand, within Psyr_1074at 1217.506 kb on + strand, within Psyr_1074at 1217.506 kb on + strand, within Psyr_1074at 1217.506 kb on + strand, within Psyr_1074at 1217.506 kb on + strand, within Psyr_1074at 1217.507 kb on - strand, within Psyr_1074at 1217.507 kb on - strand, within Psyr_1074at 1217.507 kb on - strand, within Psyr_1074at 1217.507 kb on - strand, within Psyr_1074at 1217.650 kb on + strand, within Psyr_1074at 1217.688 kb on - strand, within Psyr_1074at 1217.968 kb on + strand, within Psyr_1074at 1217.968 kb on + strand, within Psyr_1074at 1217.969 kb on - strand, within Psyr_1074at 1217.969 kb on - strand, within Psyr_1074at 1217.969 kb on - strand, within Psyr_1074

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Trimethoprim 125 ug/ml
remove
1,215,110 - Psyr_1072 0.16 -0.1
1,215,166 - Psyr_1072 0.21 -0.7
1,215,320 + Psyr_1072 0.36 -1.5
1,215,320 + Psyr_1072 0.36 +1.5
1,215,320 + Psyr_1072 0.36 +1.7
1,215,320 + Psyr_1072 0.36 -0.7
1,215,320 + Psyr_1072 0.36 -0.2
1,215,320 + Psyr_1072 0.36 +0.7
1,215,323 + Psyr_1072 0.36 -0.5
1,215,324 - Psyr_1072 0.37 +0.3
1,215,324 - Psyr_1072 0.37 -0.3
1,215,332 - Psyr_1072 0.37 -0.3
1,215,346 - Psyr_1072 0.39 -1.2
1,215,346 - Psyr_1072 0.39 +2.0
1,215,441 - Psyr_1072 0.48 -2.0
1,215,464 + Psyr_1072 0.50 -0.0
1,215,465 - Psyr_1072 0.50 -0.7
1,215,465 - Psyr_1072 0.50 -1.2
1,215,465 - Psyr_1072 0.50 +0.1
1,215,531 + Psyr_1072 0.57 +1.0
1,215,532 - Psyr_1072 0.57 -0.1
1,215,593 + Psyr_1072 0.63 +1.2
1,215,593 + Psyr_1072 0.63 +0.2
1,215,593 + Psyr_1072 0.63 +1.5
1,215,594 - Psyr_1072 0.63 +1.3
1,215,594 - Psyr_1072 0.63 +0.2
1,215,594 - Psyr_1072 0.63 +0.8
1,215,594 - Psyr_1072 0.63 +0.8
1,215,594 - Psyr_1072 0.63 +0.9
1,215,778 + Psyr_1072 0.81 -0.1
1,215,796 + Psyr_1072 0.82 +0.2
1,215,796 + Psyr_1072 0.82 +0.7
1,215,797 - Psyr_1072 0.83 +0.4
1,215,800 + Psyr_1072 0.83 -0.2
1,215,957 - +1.8
1,215,967 + +1.9
1,215,967 + -2.8
1,215,967 + -0.0
1,215,967 + -0.5
1,215,967 + -0.0
1,215,967 + +0.4
1,215,968 - -2.1
1,215,968 - +0.4
1,215,968 - +0.1
1,216,199 + Psyr_1073 0.13 -0.0
1,216,200 - Psyr_1073 0.13 +1.1
1,216,200 - Psyr_1073 0.13 -0.9
1,216,200 - Psyr_1073 0.13 +0.2
1,216,200 - Psyr_1073 0.13 +0.1
1,216,202 + Psyr_1073 0.13 +0.4
1,216,202 + Psyr_1073 0.13 -0.6
1,216,266 + Psyr_1073 0.19 -0.6
1,216,284 + Psyr_1073 0.20 -0.3
1,216,284 + Psyr_1073 0.20 +0.0
1,216,284 + Psyr_1073 0.20 +0.0
1,216,284 + Psyr_1073 0.20 +1.1
1,216,285 - Psyr_1073 0.20 +0.2
1,216,285 - Psyr_1073 0.20 +1.8
1,216,285 - Psyr_1073 0.20 -1.4
1,216,285 - Psyr_1073 0.20 +0.8
1,216,285 - Psyr_1073 0.20 +1.0
1,216,285 - Psyr_1073 0.20 -0.2
1,216,316 + Psyr_1073 0.23 +1.6
1,216,425 + Psyr_1073 0.32 -1.9
1,216,425 + Psyr_1073 0.32 -1.8
1,216,425 + Psyr_1073 0.32 +0.1
1,216,425 + Psyr_1073 0.32 +0.3
1,216,426 - Psyr_1073 0.32 +0.3
1,216,426 - Psyr_1073 0.32 -0.3
1,216,426 - Psyr_1073 0.32 +0.3
1,216,426 - Psyr_1073 0.32 +0.7
1,216,426 - Psyr_1073 0.32 +0.8
1,216,486 + Psyr_1073 0.37 -0.7
1,216,524 + Psyr_1073 0.40 +0.1
1,216,853 + Psyr_1073 0.68 +0.9
1,216,854 - Psyr_1073 0.68 -0.4
1,216,854 - Psyr_1073 0.68 -0.2
1,216,854 - Psyr_1073 0.68 -0.6
1,216,857 + Psyr_1073 0.69 -1.2
1,216,857 + Psyr_1073 0.69 -0.6
1,216,857 + Psyr_1073 0.69 -0.2
1,216,857 + Psyr_1073 0.69 -0.4
1,216,857 + Psyr_1073 0.69 +0.6
1,216,857 + Psyr_1073 0.69 -0.2
1,216,857 + Psyr_1073 0.69 +0.2
1,216,857 + Psyr_1073 0.69 -2.0
1,216,857 + Psyr_1073 0.69 +0.4
1,216,857 + Psyr_1073 0.69 -1.6
1,216,857 + Psyr_1073 0.69 +0.7
1,216,858 - Psyr_1073 0.69 -1.0
1,216,858 - Psyr_1073 0.69 +0.8
1,216,858 - Psyr_1073 0.69 +1.3
1,216,858 - Psyr_1073 0.69 +0.0
1,216,858 - Psyr_1073 0.69 +0.1
1,217,155 - -0.3
1,217,196 + -0.2
1,217,196 + +1.8
1,217,196 + +1.0
1,217,197 - +1.1
1,217,197 - +1.4
1,217,197 - -0.9
1,217,250 + -1.3
1,217,250 + +0.2
1,217,250 + +1.5
1,217,251 - -0.7
1,217,251 - -1.3
1,217,251 - -0.2
1,217,362 + Psyr_1074 0.11 -0.1
1,217,362 + Psyr_1074 0.11 -0.2
1,217,362 + Psyr_1074 0.11 +0.1
1,217,371 + Psyr_1074 0.12 +1.0
1,217,371 + Psyr_1074 0.12 +0.7
1,217,371 + Psyr_1074 0.12 +1.4
1,217,372 - Psyr_1074 0.12 +0.1
1,217,372 - Psyr_1074 0.12 +0.5
1,217,500 + Psyr_1074 0.24 +0.1
1,217,500 + Psyr_1074 0.24 +0.4
1,217,500 + Psyr_1074 0.24 +0.4
1,217,500 + Psyr_1074 0.24 -0.3
1,217,500 + Psyr_1074 0.24 -0.1
1,217,500 + Psyr_1074 0.24 +0.7
1,217,500 + Psyr_1074 0.24 +0.3
1,217,500 + Psyr_1074 0.24 -0.4
1,217,500 + Psyr_1074 0.24 -0.6
1,217,500 + Psyr_1074 0.24 -0.2
1,217,500 + Psyr_1074 0.24 +0.4
1,217,500 + Psyr_1074 0.24 -0.8
1,217,501 - Psyr_1074 0.24 +1.0
1,217,501 - Psyr_1074 0.24 +2.4
1,217,501 - Psyr_1074 0.24 +0.3
1,217,501 - Psyr_1074 0.24 -0.1
1,217,506 + Psyr_1074 0.24 -1.1
1,217,506 + Psyr_1074 0.24 +0.5
1,217,506 + Psyr_1074 0.24 +0.5
1,217,506 + Psyr_1074 0.24 -0.1
1,217,506 + Psyr_1074 0.24 -0.5
1,217,507 - Psyr_1074 0.24 +1.7
1,217,507 - Psyr_1074 0.24 -1.8
1,217,507 - Psyr_1074 0.24 +0.7
1,217,507 - Psyr_1074 0.24 +1.8
1,217,650 + Psyr_1074 0.37 -0.8
1,217,688 - Psyr_1074 0.41 -0.3
1,217,968 + Psyr_1074 0.66 -1.2
1,217,968 + Psyr_1074 0.66 -0.8
1,217,969 - Psyr_1074 0.66 +0.1
1,217,969 - Psyr_1074 0.66 +0.2
1,217,969 - Psyr_1074 0.66 +0.4

Or see this region's nucleotide sequence