Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1047

Experiment: KB with Trimethoprim 125 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1046 and Psyr_1047 overlap by 14 nucleotidesPsyr_1047 and Psyr_1048 are separated by 25 nucleotidesPsyr_1048 and Psyr_1049 are separated by 71 nucleotides Psyr_1046: Psyr_1046 - Fusaric acid resistance protein conserved region, at 1,181,823 to 1,184,012 _1046 Psyr_1047: Psyr_1047 - conserved hypothetical protein, at 1,183,999 to 1,184,202 _1047 Psyr_1048: Psyr_1048 - Secretion protein HlyD, at 1,184,228 to 1,185,088 _1048 Psyr_1049: Psyr_1049 - Short-chain dehydrogenase/reductase SDR, at 1,185,160 to 1,185,978 _1049 Position (kb) 1183 1184 1185Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1183.166 kb on + strand, within Psyr_1046at 1183.167 kb on - strand, within Psyr_1046at 1183.369 kb on - strand, within Psyr_1046at 1183.377 kb on + strand, within Psyr_1046at 1183.395 kb on + strand, within Psyr_1046at 1183.395 kb on + strand, within Psyr_1046at 1183.395 kb on + strand, within Psyr_1046at 1183.445 kb on + strand, within Psyr_1046at 1183.445 kb on + strand, within Psyr_1046at 1183.446 kb on - strand, within Psyr_1046at 1183.446 kb on - strand, within Psyr_1046at 1183.726 kb on - strand, within Psyr_1046at 1183.726 kb on - strand, within Psyr_1046at 1183.911 kb on + strandat 1183.912 kb on - strandat 1183.966 kb on - strandat 1184.015 kb on + strandat 1184.015 kb on + strandat 1184.016 kb on - strandat 1184.016 kb on - strandat 1184.032 kb on + strand, within Psyr_1047at 1184.032 kb on + strand, within Psyr_1047at 1184.032 kb on + strand, within Psyr_1047at 1184.032 kb on + strand, within Psyr_1047at 1184.032 kb on + strand, within Psyr_1047at 1184.032 kb on + strand, within Psyr_1047at 1184.032 kb on + strand, within Psyr_1047at 1184.032 kb on + strand, within Psyr_1047at 1184.032 kb on + strand, within Psyr_1047at 1184.032 kb on + strand, within Psyr_1047at 1184.032 kb on + strand, within Psyr_1047at 1184.032 kb on + strand, within Psyr_1047at 1184.032 kb on + strand, within Psyr_1047at 1184.033 kb on - strand, within Psyr_1047at 1184.033 kb on - strand, within Psyr_1047at 1184.033 kb on - strand, within Psyr_1047at 1184.033 kb on - strand, within Psyr_1047at 1184.033 kb on - strand, within Psyr_1047at 1184.033 kb on - strand, within Psyr_1047at 1184.033 kb on - strand, within Psyr_1047at 1184.033 kb on - strand, within Psyr_1047at 1184.033 kb on - strand, within Psyr_1047at 1184.033 kb on - strand, within Psyr_1047at 1184.033 kb on - strand, within Psyr_1047at 1184.033 kb on - strand, within Psyr_1047at 1184.161 kb on - strand, within Psyr_1047at 1184.161 kb on - strand, within Psyr_1047at 1184.309 kb on + strandat 1184.309 kb on + strandat 1184.310 kb on - strandat 1184.310 kb on - strandat 1184.310 kb on - strandat 1184.706 kb on - strand, within Psyr_1048at 1184.738 kb on + strand, within Psyr_1048at 1184.738 kb on + strand, within Psyr_1048at 1184.738 kb on + strand, within Psyr_1048at 1184.738 kb on + strand, within Psyr_1048at 1184.912 kb on + strand, within Psyr_1048at 1184.912 kb on + strand, within Psyr_1048at 1184.912 kb on + strand, within Psyr_1048at 1184.913 kb on - strand, within Psyr_1048at 1184.913 kb on - strand, within Psyr_1048at 1184.913 kb on - strand, within Psyr_1048at 1184.913 kb on - strand, within Psyr_1048at 1185.089 kb on + strandat 1185.089 kb on + strandat 1185.090 kb on - strandat 1185.090 kb on - strandat 1185.090 kb on - strandat 1185.090 kb on - strandat 1185.090 kb on - strandat 1185.090 kb on - strandat 1185.144 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Trimethoprim 125 ug/ml
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1,183,166 + Psyr_1046 0.61 +0.7
1,183,167 - Psyr_1046 0.61 +1.4
1,183,369 - Psyr_1046 0.71 +1.0
1,183,377 + Psyr_1046 0.71 -0.2
1,183,395 + Psyr_1046 0.72 +0.5
1,183,395 + Psyr_1046 0.72 +1.0
1,183,395 + Psyr_1046 0.72 +0.8
1,183,445 + Psyr_1046 0.74 +0.2
1,183,445 + Psyr_1046 0.74 +0.8
1,183,446 - Psyr_1046 0.74 +1.3
1,183,446 - Psyr_1046 0.74 +0.7
1,183,726 - Psyr_1046 0.87 +0.9
1,183,726 - Psyr_1046 0.87 +0.2
1,183,911 + -0.4
1,183,912 - -0.6
1,183,966 - +0.8
1,184,015 + -0.4
1,184,015 + +2.4
1,184,016 - +0.1
1,184,016 - +0.0
1,184,032 + Psyr_1047 0.16 -0.5
1,184,032 + Psyr_1047 0.16 +0.6
1,184,032 + Psyr_1047 0.16 -1.2
1,184,032 + Psyr_1047 0.16 +0.2
1,184,032 + Psyr_1047 0.16 -1.1
1,184,032 + Psyr_1047 0.16 -1.4
1,184,032 + Psyr_1047 0.16 -0.8
1,184,032 + Psyr_1047 0.16 -0.0
1,184,032 + Psyr_1047 0.16 +0.4
1,184,032 + Psyr_1047 0.16 -1.3
1,184,032 + Psyr_1047 0.16 -0.4
1,184,032 + Psyr_1047 0.16 +0.1
1,184,032 + Psyr_1047 0.16 -0.8
1,184,033 - Psyr_1047 0.17 +0.5
1,184,033 - Psyr_1047 0.17 -0.1
1,184,033 - Psyr_1047 0.17 +0.5
1,184,033 - Psyr_1047 0.17 +0.5
1,184,033 - Psyr_1047 0.17 -1.4
1,184,033 - Psyr_1047 0.17 -0.3
1,184,033 - Psyr_1047 0.17 +0.4
1,184,033 - Psyr_1047 0.17 -1.2
1,184,033 - Psyr_1047 0.17 -0.2
1,184,033 - Psyr_1047 0.17 +0.8
1,184,033 - Psyr_1047 0.17 -0.2
1,184,033 - Psyr_1047 0.17 -0.3
1,184,161 - Psyr_1047 0.79 +0.4
1,184,161 - Psyr_1047 0.79 -0.7
1,184,309 + +0.2
1,184,309 + +1.1
1,184,310 - -0.8
1,184,310 - -0.4
1,184,310 - +0.1
1,184,706 - Psyr_1048 0.56 +0.1
1,184,738 + Psyr_1048 0.59 -0.9
1,184,738 + Psyr_1048 0.59 -0.2
1,184,738 + Psyr_1048 0.59 +0.7
1,184,738 + Psyr_1048 0.59 -1.5
1,184,912 + Psyr_1048 0.79 -0.5
1,184,912 + Psyr_1048 0.79 -0.8
1,184,912 + Psyr_1048 0.79 +0.4
1,184,913 - Psyr_1048 0.80 -0.0
1,184,913 - Psyr_1048 0.80 +0.2
1,184,913 - Psyr_1048 0.80 -0.8
1,184,913 - Psyr_1048 0.80 -1.0
1,185,089 + -0.2
1,185,089 + +0.2
1,185,090 - +1.1
1,185,090 - -0.3
1,185,090 - +0.0
1,185,090 - +0.0
1,185,090 - -1.5
1,185,090 - -0.2
1,185,144 + -3.1

Or see this region's nucleotide sequence