Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0970

Experiment: KB with Trimethoprim 125 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0968 and Psyr_0969 are separated by 4 nucleotidesPsyr_0969 and Psyr_0970 are separated by 207 nucleotidesPsyr_0970 and Psyr_0971 are separated by 66 nucleotidesPsyr_0971 and Psyr_0972 are separated by 66 nucleotides Psyr_0968: Psyr_0968 - Xanthine/uracil permease family, at 1,101,699 to 1,102,976 _0968 Psyr_0969: Psyr_0969 - uracil phosphoribosyltransferase, at 1,102,981 to 1,103,619 _0969 Psyr_0970: Psyr_0970 - Phosphoribosyltransferase, at 1,103,827 to 1,104,384 _0970 Psyr_0971: Psyr_0971 - conserved hypothetical protein, at 1,104,451 to 1,104,954 _0971 Psyr_0972: Psyr_0972 - conserved hypothetical protein, at 1,105,021 to 1,105,308 _0972 Position (kb) 1103 1104 1105Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1103.045 kb on + strand, within Psyr_0969at 1103.046 kb on - strand, within Psyr_0969at 1103.046 kb on - strand, within Psyr_0969at 1103.046 kb on - strand, within Psyr_0969at 1103.084 kb on + strand, within Psyr_0969at 1103.084 kb on + strand, within Psyr_0969at 1103.085 kb on - strand, within Psyr_0969at 1103.085 kb on - strand, within Psyr_0969at 1103.282 kb on + strand, within Psyr_0969at 1103.282 kb on + strand, within Psyr_0969at 1103.465 kb on + strand, within Psyr_0969at 1103.466 kb on - strand, within Psyr_0969at 1103.466 kb on - strand, within Psyr_0969at 1103.466 kb on - strand, within Psyr_0969at 1103.466 kb on - strand, within Psyr_0969at 1103.498 kb on + strand, within Psyr_0969at 1103.498 kb on + strand, within Psyr_0969at 1103.498 kb on + strand, within Psyr_0969at 1103.498 kb on + strand, within Psyr_0969at 1103.498 kb on + strand, within Psyr_0969at 1103.498 kb on + strand, within Psyr_0969at 1103.498 kb on + strand, within Psyr_0969at 1103.498 kb on + strand, within Psyr_0969at 1103.498 kb on + strand, within Psyr_0969at 1103.498 kb on + strand, within Psyr_0969at 1103.498 kb on + strand, within Psyr_0969at 1103.499 kb on - strand, within Psyr_0969at 1103.499 kb on - strand, within Psyr_0969at 1103.499 kb on - strand, within Psyr_0969at 1103.499 kb on - strand, within Psyr_0969at 1103.569 kb on - strandat 1103.587 kb on + strandat 1103.588 kb on - strandat 1103.652 kb on + strandat 1103.652 kb on + strandat 1103.652 kb on + strandat 1103.652 kb on + strandat 1103.653 kb on - strandat 1103.653 kb on - strandat 1103.653 kb on - strandat 1103.653 kb on - strandat 1103.662 kb on + strandat 1103.663 kb on - strandat 1103.681 kb on + strandat 1103.682 kb on - strandat 1103.746 kb on + strandat 1103.783 kb on + strandat 1103.784 kb on - strandat 1103.812 kb on + strandat 1103.881 kb on + strandat 1103.882 kb on - strandat 1103.882 kb on - strandat 1104.040 kb on + strand, within Psyr_0970at 1104.041 kb on - strand, within Psyr_0970at 1104.041 kb on - strand, within Psyr_0970at 1104.280 kb on + strand, within Psyr_0970at 1104.307 kb on + strand, within Psyr_0970at 1104.309 kb on + strand, within Psyr_0970at 1104.309 kb on + strand, within Psyr_0970at 1104.309 kb on + strand, within Psyr_0970at 1104.309 kb on + strand, within Psyr_0970at 1104.309 kb on + strand, within Psyr_0970at 1104.309 kb on + strand, within Psyr_0970at 1104.310 kb on - strand, within Psyr_0970at 1104.331 kb on + strandat 1104.331 kb on + strandat 1104.331 kb on + strandat 1104.331 kb on + strandat 1104.332 kb on - strandat 1104.332 kb on - strandat 1104.332 kb on - strandat 1104.349 kb on - strandat 1104.360 kb on + strandat 1104.364 kb on + strandat 1104.364 kb on + strandat 1104.365 kb on - strandat 1104.365 kb on - strandat 1104.365 kb on - strandat 1104.382 kb on + strandat 1104.382 kb on + strandat 1104.382 kb on + strandat 1104.382 kb on + strandat 1104.382 kb on + strandat 1104.382 kb on + strandat 1104.382 kb on + strandat 1104.382 kb on + strandat 1104.383 kb on - strandat 1104.383 kb on - strandat 1104.383 kb on - strandat 1104.383 kb on - strandat 1104.383 kb on - strandat 1104.383 kb on - strandat 1104.435 kb on + strandat 1104.435 kb on + strandat 1104.435 kb on + strandat 1104.435 kb on + strandat 1104.435 kb on + strandat 1104.435 kb on + strandat 1104.435 kb on + strandat 1104.435 kb on + strandat 1104.435 kb on + strandat 1104.436 kb on - strandat 1104.436 kb on - strandat 1104.436 kb on - strandat 1104.436 kb on - strandat 1104.438 kb on - strandat 1104.625 kb on + strand, within Psyr_0971at 1104.625 kb on + strand, within Psyr_0971at 1104.626 kb on - strand, within Psyr_0971at 1104.626 kb on - strand, within Psyr_0971at 1104.780 kb on + strand, within Psyr_0971at 1104.793 kb on + strand, within Psyr_0971at 1104.793 kb on + strand, within Psyr_0971at 1104.793 kb on + strand, within Psyr_0971at 1104.793 kb on + strand, within Psyr_0971at 1104.793 kb on + strand, within Psyr_0971at 1104.793 kb on + strand, within Psyr_0971at 1104.793 kb on + strand, within Psyr_0971at 1104.793 kb on + strand, within Psyr_0971at 1104.793 kb on + strand, within Psyr_0971at 1104.794 kb on - strand, within Psyr_0971at 1104.794 kb on - strand, within Psyr_0971at 1104.794 kb on - strand, within Psyr_0971at 1104.794 kb on - strand, within Psyr_0971at 1104.794 kb on - strand, within Psyr_0971at 1104.794 kb on - strand, within Psyr_0971at 1104.794 kb on - strand, within Psyr_0971at 1104.794 kb on - strand, within Psyr_0971at 1104.794 kb on - strand, within Psyr_0971at 1104.794 kb on - strand, within Psyr_0971at 1104.794 kb on - strand, within Psyr_0971at 1104.794 kb on - strand, within Psyr_0971at 1104.823 kb on + strand, within Psyr_0971at 1104.823 kb on + strand, within Psyr_0971at 1104.823 kb on + strand, within Psyr_0971at 1104.823 kb on + strand, within Psyr_0971at 1104.823 kb on + strand, within Psyr_0971at 1104.823 kb on + strand, within Psyr_0971at 1104.824 kb on - strand, within Psyr_0971at 1104.824 kb on - strand, within Psyr_0971at 1104.824 kb on - strand, within Psyr_0971at 1104.827 kb on - strand, within Psyr_0971at 1104.880 kb on + strand, within Psyr_0971at 1104.881 kb on - strand, within Psyr_0971at 1104.898 kb on + strand, within Psyr_0971at 1104.899 kb on - strand, within Psyr_0971at 1105.026 kb on + strandat 1105.027 kb on - strandat 1105.032 kb on + strandat 1105.032 kb on + strandat 1105.032 kb on + strandat 1105.032 kb on + strandat 1105.033 kb on - strandat 1105.033 kb on - strandat 1105.033 kb on - strandat 1105.099 kb on + strand, within Psyr_0972at 1105.099 kb on + strand, within Psyr_0972at 1105.100 kb on - strand, within Psyr_0972at 1105.107 kb on + strand, within Psyr_0972at 1105.276 kb on + strand, within Psyr_0972at 1105.276 kb on + strand, within Psyr_0972at 1105.276 kb on + strand, within Psyr_0972at 1105.276 kb on + strand, within Psyr_0972at 1105.277 kb on - strand, within Psyr_0972at 1105.277 kb on - strand, within Psyr_0972at 1105.277 kb on - strand, within Psyr_0972at 1105.277 kb on - strand, within Psyr_0972at 1105.277 kb on - strand, within Psyr_0972at 1105.277 kb on - strand, within Psyr_0972at 1105.277 kb on - strand, within Psyr_0972

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Trimethoprim 125 ug/ml
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1,103,045 + Psyr_0969 0.10 +0.6
1,103,046 - Psyr_0969 0.10 -0.8
1,103,046 - Psyr_0969 0.10 -0.7
1,103,046 - Psyr_0969 0.10 -0.7
1,103,084 + Psyr_0969 0.16 -0.0
1,103,084 + Psyr_0969 0.16 +0.8
1,103,085 - Psyr_0969 0.16 -2.2
1,103,085 - Psyr_0969 0.16 -0.5
1,103,282 + Psyr_0969 0.47 -0.7
1,103,282 + Psyr_0969 0.47 -0.3
1,103,465 + Psyr_0969 0.76 -0.1
1,103,466 - Psyr_0969 0.76 -0.4
1,103,466 - Psyr_0969 0.76 +0.0
1,103,466 - Psyr_0969 0.76 -0.3
1,103,466 - Psyr_0969 0.76 +0.7
1,103,498 + Psyr_0969 0.81 -0.6
1,103,498 + Psyr_0969 0.81 +0.5
1,103,498 + Psyr_0969 0.81 -1.5
1,103,498 + Psyr_0969 0.81 -0.6
1,103,498 + Psyr_0969 0.81 -2.6
1,103,498 + Psyr_0969 0.81 +0.0
1,103,498 + Psyr_0969 0.81 +0.8
1,103,498 + Psyr_0969 0.81 -0.1
1,103,498 + Psyr_0969 0.81 -0.7
1,103,498 + Psyr_0969 0.81 -0.3
1,103,498 + Psyr_0969 0.81 -0.4
1,103,499 - Psyr_0969 0.81 -0.1
1,103,499 - Psyr_0969 0.81 +0.1
1,103,499 - Psyr_0969 0.81 +0.7
1,103,499 - Psyr_0969 0.81 -1.5
1,103,569 - +0.8
1,103,587 + -0.2
1,103,588 - +0.4
1,103,652 + -2.3
1,103,652 + +1.1
1,103,652 + +0.8
1,103,652 + -1.0
1,103,653 - +0.4
1,103,653 - -1.0
1,103,653 - +0.1
1,103,653 - -0.3
1,103,662 + +0.1
1,103,663 - -0.5
1,103,681 + +2.0
1,103,682 - -0.5
1,103,746 + +0.5
1,103,783 + +0.3
1,103,784 - -0.2
1,103,812 + +0.3
1,103,881 + -1.7
1,103,882 - -1.1
1,103,882 - -0.7
1,104,040 + Psyr_0970 0.38 -0.6
1,104,041 - Psyr_0970 0.38 -1.1
1,104,041 - Psyr_0970 0.38 -2.0
1,104,280 + Psyr_0970 0.81 +0.3
1,104,307 + Psyr_0970 0.86 -0.2
1,104,309 + Psyr_0970 0.86 +0.3
1,104,309 + Psyr_0970 0.86 -0.5
1,104,309 + Psyr_0970 0.86 -1.5
1,104,309 + Psyr_0970 0.86 -0.2
1,104,309 + Psyr_0970 0.86 -0.3
1,104,309 + Psyr_0970 0.86 +0.8
1,104,310 - Psyr_0970 0.87 -0.5
1,104,331 + +0.6
1,104,331 + -0.7
1,104,331 + +0.4
1,104,331 + -0.6
1,104,332 - +0.0
1,104,332 - -0.6
1,104,332 - +0.3
1,104,349 - -1.7
1,104,360 + +0.2
1,104,364 + -0.2
1,104,364 + -0.4
1,104,365 - -1.2
1,104,365 - -2.9
1,104,365 - -1.3
1,104,382 + -0.7
1,104,382 + -1.6
1,104,382 + -1.7
1,104,382 + -1.0
1,104,382 + +0.4
1,104,382 + -0.7
1,104,382 + +0.4
1,104,382 + +0.2
1,104,383 - -0.2
1,104,383 - -0.0
1,104,383 - +0.1
1,104,383 - -1.2
1,104,383 - -1.7
1,104,383 - -0.2
1,104,435 + +1.0
1,104,435 + +0.2
1,104,435 + -0.5
1,104,435 + +0.7
1,104,435 + -2.6
1,104,435 + -0.1
1,104,435 + -0.7
1,104,435 + -1.7
1,104,435 + +1.2
1,104,436 - -0.9
1,104,436 - +0.2
1,104,436 - -0.2
1,104,436 - -0.2
1,104,438 - +0.0
1,104,625 + Psyr_0971 0.35 -0.6
1,104,625 + Psyr_0971 0.35 -2.0
1,104,626 - Psyr_0971 0.35 -0.2
1,104,626 - Psyr_0971 0.35 -0.2
1,104,780 + Psyr_0971 0.65 +0.4
1,104,793 + Psyr_0971 0.68 -0.1
1,104,793 + Psyr_0971 0.68 +0.5
1,104,793 + Psyr_0971 0.68 -0.0
1,104,793 + Psyr_0971 0.68 +0.5
1,104,793 + Psyr_0971 0.68 -0.6
1,104,793 + Psyr_0971 0.68 -0.6
1,104,793 + Psyr_0971 0.68 +0.5
1,104,793 + Psyr_0971 0.68 +2.7
1,104,793 + Psyr_0971 0.68 +0.6
1,104,794 - Psyr_0971 0.68 +1.1
1,104,794 - Psyr_0971 0.68 +0.2
1,104,794 - Psyr_0971 0.68 -0.1
1,104,794 - Psyr_0971 0.68 -0.2
1,104,794 - Psyr_0971 0.68 -1.2
1,104,794 - Psyr_0971 0.68 +0.3
1,104,794 - Psyr_0971 0.68 +0.8
1,104,794 - Psyr_0971 0.68 +0.3
1,104,794 - Psyr_0971 0.68 -0.3
1,104,794 - Psyr_0971 0.68 +0.8
1,104,794 - Psyr_0971 0.68 +1.4
1,104,794 - Psyr_0971 0.68 +0.8
1,104,823 + Psyr_0971 0.74 -0.9
1,104,823 + Psyr_0971 0.74 +0.2
1,104,823 + Psyr_0971 0.74 +1.8
1,104,823 + Psyr_0971 0.74 -0.3
1,104,823 + Psyr_0971 0.74 -2.2
1,104,823 + Psyr_0971 0.74 +2.1
1,104,824 - Psyr_0971 0.74 +0.5
1,104,824 - Psyr_0971 0.74 -0.1
1,104,824 - Psyr_0971 0.74 -0.7
1,104,827 - Psyr_0971 0.75 +0.1
1,104,880 + Psyr_0971 0.85 +0.3
1,104,881 - Psyr_0971 0.85 +0.0
1,104,898 + Psyr_0971 0.89 -1.7
1,104,899 - Psyr_0971 0.89 -0.2
1,105,026 + +0.1
1,105,027 - -0.3
1,105,032 + +0.7
1,105,032 + +0.7
1,105,032 + -1.9
1,105,032 + -0.2
1,105,033 - -0.9
1,105,033 - +1.8
1,105,033 - +0.5
1,105,099 + Psyr_0972 0.27 +1.0
1,105,099 + Psyr_0972 0.27 +2.4
1,105,100 - Psyr_0972 0.27 -1.2
1,105,107 + Psyr_0972 0.30 -2.7
1,105,276 + Psyr_0972 0.89 +0.3
1,105,276 + Psyr_0972 0.89 -0.5
1,105,276 + Psyr_0972 0.89 -2.5
1,105,276 + Psyr_0972 0.89 +0.4
1,105,277 - Psyr_0972 0.89 -1.5
1,105,277 - Psyr_0972 0.89 -1.3
1,105,277 - Psyr_0972 0.89 +0.1
1,105,277 - Psyr_0972 0.89 -1.0
1,105,277 - Psyr_0972 0.89 +1.3
1,105,277 - Psyr_0972 0.89 -0.3
1,105,277 - Psyr_0972 0.89 +1.2

Or see this region's nucleotide sequence