Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0920

Experiment: KB with Trimethoprim 125 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Trimethoprim 125 ug/ml
1,045,071	+		Psyr_0919	0.53	-2.3
1,045,179	+		Psyr_0919	0.59	-1.7
1,045,179	+		Psyr_0919	0.59	-1.5
1,045,203	-		Psyr_0919	0.60	-0.7
1,045,203	-		Psyr_0919	0.60	-0.7
1,045,248	+		Psyr_0919	0.62	-1.5
1,045,284	+		Psyr_0919	0.64	-1.5
1,045,285	-		Psyr_0919	0.64	-3.1
1,045,380	+		Psyr_0919	0.69	+0.4
1,045,381	-		Psyr_0919	0.69	-3.2
1,045,566	+		Psyr_0919	0.79	+0.8
1,045,580	-		Psyr_0919	0.79	-1.9
1,045,608	+		Psyr_0919	0.81	+1.0
1,045,608	+		Psyr_0919	0.81	+0.0
1,045,608	+		Psyr_0919	0.81	-0.5
1,045,609	-		Psyr_0919	0.81	-1.3
1,045,609	-		Psyr_0919	0.81	-1.0
1,045,609	-		Psyr_0919	0.81	-1.5
1,045,611	+		Psyr_0919	0.81	+0.0
1,045,611	+		Psyr_0919	0.81	-1.1
1,045,611	+		Psyr_0919	0.81	+1.1
1,045,611	+		Psyr_0919	0.81	-0.7
1,045,611	+		Psyr_0919	0.81	-0.5
1,045,611	+		Psyr_0919	0.81	+0.5
1,045,612	-		Psyr_0919	0.81	+0.0
1,045,612	-		Psyr_0919	0.81	-2.3
1,045,612	-		Psyr_0919	0.81	-0.0
1,045,612	-		Psyr_0919	0.81	+0.5
1,045,625	+		Psyr_0919	0.82	-0.2
1,045,676	+		Psyr_0919	0.84	-0.6
1,045,676	+		Psyr_0919	0.84	+0.0
1,045,676	+		Psyr_0919	0.84	+1.8
1,045,677	-		Psyr_0919	0.84	-0.5
1,045,677	-		Psyr_0919	0.84	-2.6
1,045,703	+		Psyr_0919	0.86	-0.7
1,045,703	+		Psyr_0919	0.86	-1.2
1,045,704	-		Psyr_0919	0.86	-0.2
1,045,704	-		Psyr_0919	0.86	-0.6
1,045,704	-		Psyr_0919	0.86	+0.4
1,045,704	-		Psyr_0919	0.86	-0.7
1,045,727	+		Psyr_0919	0.87	-2.7
1,045,743	+		Psyr_0919	0.88	-1.5
1,045,755	-		Psyr_0919	0.89	-1.7
1,045,773	+		Psyr_0919	0.89	+0.2
1,045,773	+		Psyr_0919	0.89	-1.1
1,045,774	-		Psyr_0919	0.89	-1.2
1,045,803	+				-0.4
1,045,804	-				-2.0
1,045,836	+				-0.4
1,045,836	+				+0.4
1,045,836	+				+0.6
1,045,837	-				+1.2
1,045,837	-				-0.3
1,045,933	+				-2.3
1,045,933	+				+1.0
1,045,933	+				-2.0
1,045,934	-				-0.7
1,045,982	+				-0.5
1,045,983	-				+0.8
1,045,996	+				+0.5
1,045,996	+				-0.6
1,045,996	+				-0.9
1,045,997	-				-3.1
1,045,997	-				-1.7
1,046,092	+				-2.2
1,046,092	+				-0.7
1,046,092	+				-0.2
1,046,092	+				+0.3
1,046,093	-				-0.2
1,046,093	-				+1.8
1,046,093	-				-4.4
1,046,137	+				+0.8
1,046,137	+				-1.0
1,046,137	+				-1.0
1,046,138	-				-1.0
1,046,159	+				+0.8
1,046,159	+				-2.2
1,046,176	+				-0.0
1,046,176	+				-2.2
1,046,176	+				-0.1
1,046,176	+				+1.2
1,046,176	+				-0.7
1,046,177	-				+0.8
1,046,180	+				-0.7
1,046,180	+				-1.7
1,046,180	+				-1.6
1,046,180	+				-1.0
1,046,180	+				-0.7
1,046,180	+				-0.9
1,046,180	+				+0.8
1,046,180	+				-1.7
1,046,180	+				-0.5
1,046,180	+				-1.8
1,046,180	+				-0.2
1,046,180	+				-1.4
1,046,180	+				+0.1
1,046,180	+				-3.1
1,046,180	+				-0.2
1,046,180	+				-1.7
1,046,180	+				+0.3
1,046,180	+				-1.2
1,046,180	+				-0.4
1,046,180	+				-1.0
1,046,180	+				-1.3
1,046,180	+				-1.7
1,046,181	-				-1.2
1,046,181	-				-2.2
1,046,181	-				-2.7
1,046,181	-				-1.7
1,046,181	-				-1.5
1,046,181	-				-0.3
1,046,181	-				-2.0
1,046,181	-				-1.7
1,046,181	-				-2.5
1,046,181	-				-1.0
1,046,181	-				+1.4
1,046,182	+				+0.4
1,046,182	+				-0.2
1,046,182	+				+1.1
1,046,182	+				-2.3
1,046,182	+				+0.8
1,046,182	+				-0.7
1,046,182	+				-1.0
1,046,182	+				-0.4
1,046,182	+				-0.9
1,046,183	-				+0.8
1,046,183	-				+0.8
1,046,183	-				-0.7
1,046,183	-				-0.5
1,046,183	-				-2.7
1,046,183	-				+0.8
1,046,183	-				-1.7
1,046,183	-				-2.6
1,046,183	-				-0.6
1,046,183	-				-2.1
1,046,183	-				-1.9
1,046,183	-				-1.6
1,046,183	-				-2.6
1,046,183	-				-2.0
1,046,183	-				+0.5
1,046,365	+		Psyr_0920	0.16	+1.8
1,046,366	-		Psyr_0920	0.16	-2.1
1,046,366	-		Psyr_0920	0.16	+0.1
1,046,373	+		Psyr_0920	0.16	-0.3
1,046,373	+		Psyr_0920	0.16	-0.1
1,046,374	-		Psyr_0920	0.16	-0.3
1,046,374	-		Psyr_0920	0.16	-1.0
1,046,406	+		Psyr_0920	0.17	+1.4
1,046,406	+		Psyr_0920	0.17	-0.2
1,046,406	+		Psyr_0920	0.17	+0.1
1,046,406	+		Psyr_0920	0.17	-0.3
1,046,407	-		Psyr_0920	0.17	-1.5
1,046,407	-		Psyr_0920	0.17	-1.4
1,046,407	-		Psyr_0920	0.17	-1.8
1,046,407	-		Psyr_0920	0.17	-1.9
1,046,414	+		Psyr_0920	0.18	-0.7
1,046,434	-		Psyr_0920	0.18	-0.4
1,046,434	-		Psyr_0920	0.18	-1.5
1,046,434	-		Psyr_0920	0.18	-2.7
1,046,436	+		Psyr_0920	0.18	-0.9
1,046,444	+		Psyr_0920	0.19	-0.2
1,046,449	+		Psyr_0920	0.19	-0.7
1,046,450	-		Psyr_0920	0.19	-2.6
1,046,472	-		Psyr_0920	0.20	-0.9
1,046,521	+		Psyr_0920	0.22	+0.6
1,046,521	+		Psyr_0920	0.22	-0.4
1,046,522	-		Psyr_0920	0.22	-1.2
1,046,550	-		Psyr_0920	0.23	+0.0
1,046,550	-		Psyr_0920	0.23	-1.7
1,046,576	+		Psyr_0920	0.24	+0.1
1,046,615	-		Psyr_0920	0.26	-1.0
1,046,615	-		Psyr_0920	0.26	-0.7
1,046,652	+		Psyr_0920	0.27	-1.5
1,046,706	+		Psyr_0920	0.29	-0.2
1,046,706	+		Psyr_0920	0.29	-1.0
1,046,706	+		Psyr_0920	0.29	-2.0
1,046,706	+		Psyr_0920	0.29	+0.8
1,046,707	-		Psyr_0920	0.29	-1.0
1,046,707	-		Psyr_0920	0.29	-3.6
1,046,707	-		Psyr_0920	0.29	-1.3
1,046,708	+		Psyr_0920	0.29	-1.7
1,046,708	+		Psyr_0920	0.29	-0.4
1,046,708	+		Psyr_0920	0.29	-0.7
1,046,708	+		Psyr_0920	0.29	-0.6
1,046,708	+		Psyr_0920	0.29	+0.1
1,046,708	+		Psyr_0920	0.29	+2.2
1,046,729	+		Psyr_0920	0.30	-0.6
1,046,749	+		Psyr_0920	0.31	-1.0
1,046,844	+		Psyr_0920	0.35	-2.2
1,046,874	+		Psyr_0920	0.36	-0.5
1,046,874	+		Psyr_0920	0.36	+2.4
1,046,874	+		Psyr_0920	0.36	-1.0
1,046,875	-		Psyr_0920	0.36	-1.0
1,046,875	-		Psyr_0920	0.36	-0.3
1,046,875	-		Psyr_0920	0.36	-0.6
1,046,890	+		Psyr_0920	0.37	-0.2
1,046,890	+		Psyr_0920	0.37	+0.0
1,046,890	+		Psyr_0920	0.37	+1.1
1,046,890	+		Psyr_0920	0.37	-1.2
1,046,890	+		Psyr_0920	0.37	+0.7
1,046,890	+		Psyr_0920	0.37	-0.9
1,046,890	+		Psyr_0920	0.37	+0.0
1,046,890	+		Psyr_0920	0.37	-2.3
1,046,890	+		Psyr_0920	0.37	+0.8
1,046,891	-		Psyr_0920	0.37	-2.9
1,046,891	-		Psyr_0920	0.37	-0.5
1,046,891	-		Psyr_0920	0.37	-1.2
1,046,891	-		Psyr_0920	0.37	+0.3
1,046,891	-		Psyr_0920	0.37	-1.5
1,046,891	-		Psyr_0920	0.37	-2.2
1,046,891	-		Psyr_0920	0.37	-1.5
1,046,891	-		Psyr_0920	0.37	-2.5
1,046,891	-		Psyr_0920	0.37	-1.3
1,046,891	-		Psyr_0920	0.37	-2.7
1,046,891	-		Psyr_0920	0.37	-0.7
1,046,972	+		Psyr_0920	0.40	-2.7
1,046,972	+		Psyr_0920	0.40	-1.2
1,046,972	+		Psyr_0920	0.40	-0.6
1,046,998	+		Psyr_0920	0.41	-1.1
1,046,998	+		Psyr_0920	0.41	-0.5
1,046,999	-		Psyr_0920	0.41	-2.0
1,047,058	+		Psyr_0920	0.43	-1.0
1,047,058	+		Psyr_0920	0.43	-2.4
1,047,059	-		Psyr_0920	0.43	-0.7
1,047,059	-		Psyr_0920	0.43	-1.7
1,047,068	-		Psyr_0920	0.44	-0.7
1,047,068	-		Psyr_0920	0.44	-0.5
1,047,098	+		Psyr_0920	0.45	-1.5
1,047,157	+		Psyr_0920	0.47	-2.1
1,047,157	+		Psyr_0920	0.47	-1.2
1,047,158	-		Psyr_0920	0.47	-2.5
1,047,158	-		Psyr_0920	0.47	+0.3
1,047,158	-		Psyr_0920	0.47	-2.0
1,047,158	-		Psyr_0920	0.47	-1.0
1,047,299	+		Psyr_0920	0.53	-3.9
1,047,349	+		Psyr_0920	0.55	-2.0
1,047,349	+		Psyr_0920	0.55	+0.2
1,047,383	+		Psyr_0920	0.56	-0.4
1,047,384	-		Psyr_0920	0.56	-0.7
1,047,384	-		Psyr_0920	0.56	+0.5
1,047,398	-		Psyr_0920	0.57	-1.5
1,047,460	-		Psyr_0920	0.59	-1.2
1,047,460	-		Psyr_0920	0.59	-1.5
1,047,478	-		Psyr_0920	0.60	-2.6
1,047,480	+		Psyr_0920	0.60	-1.7
1,047,480	+		Psyr_0920	0.60	+0.1
1,047,480	+		Psyr_0920	0.60	-1.2
1,047,480	+		Psyr_0920	0.60	-0.2
1,047,481	-		Psyr_0920	0.60	-2.2
1,047,481	-		Psyr_0920	0.60	-0.5
1,047,481	-		Psyr_0920	0.60	-2.2
1,047,481	-		Psyr_0920	0.60	-0.3
1,047,481	-		Psyr_0920	0.60	-1.1
1,047,483	+		Psyr_0920	0.60	+0.2
1,047,483	+		Psyr_0920	0.60	-0.7
1,047,483	+		Psyr_0920	0.60	-0.3
1,047,483	+		Psyr_0920	0.60	+0.8
1,047,483	+		Psyr_0920	0.60	+1.4
1,047,483	+		Psyr_0920	0.60	-2.9
1,047,484	-		Psyr_0920	0.60	-0.7
1,047,484	-		Psyr_0920	0.60	-3.9
1,047,484	-		Psyr_0920	0.60	-0.2
1,047,488	+		Psyr_0920	0.61	+0.4
1,047,489	-		Psyr_0920	0.61	-1.7
1,047,489	-		Psyr_0920	0.61	-1.6
1,047,510	+		Psyr_0920	0.61	-1.3
1,047,510	+		Psyr_0920	0.61	+0.3
1,047,510	+		Psyr_0920	0.61	+0.4
1,047,510	+		Psyr_0920	0.61	-0.1
1,047,510	+		Psyr_0920	0.61	-0.3
1,047,510	+		Psyr_0920	0.61	+0.6
1,047,511	-		Psyr_0920	0.61	-2.3
1,047,511	-		Psyr_0920	0.61	-3.7
1,047,511	-		Psyr_0920	0.61	+0.8
1,047,511	-		Psyr_0920	0.61	-1.7
1,047,511	-		Psyr_0920	0.61	-0.7
1,047,511	-		Psyr_0920	0.61	-0.7
1,047,511	-		Psyr_0920	0.61	-2.3
1,047,511	-		Psyr_0920	0.61	-1.2
1,047,511	-		Psyr_0920	0.61	+2.4
1,047,567	+		Psyr_0920	0.64	-1.2
1,047,567	+		Psyr_0920	0.64	-1.7
1,047,567	+		Psyr_0920	0.64	+0.3
1,047,567	+		Psyr_0920	0.64	-1.4
1,047,567	+		Psyr_0920	0.64	-1.3
1,047,567	+		Psyr_0920	0.64	+1.8
1,047,567	+		Psyr_0920	0.64	-1.4
1,047,567	+		Psyr_0920	0.64	-2.3
1,047,567	+		Psyr_0920	0.64	-0.7
1,047,567	+		Psyr_0920	0.64	+0.8
1,047,567	+		Psyr_0920	0.64	-0.2
1,047,567	+		Psyr_0920	0.64	-0.1
1,047,567	+		Psyr_0920	0.64	-0.2
1,047,567	+		Psyr_0920	0.64	+0.7
1,047,567	+		Psyr_0920	0.64	-0.7
1,047,567	+		Psyr_0920	0.64	+0.8
1,047,567	+		Psyr_0920	0.64	-0.6
1,047,567	+		Psyr_0920	0.64	+0.5
1,047,567	+		Psyr_0920	0.64	+1.8
1,047,567	+		Psyr_0920	0.64	-0.9
1,047,567	+		Psyr_0920	0.64	+1.8
1,047,567	+		Psyr_0920	0.64	+0.4
1,047,567	+		Psyr_0920	0.64	+0.8
1,047,568	-		Psyr_0920	0.64	-2.0
1,047,568	-		Psyr_0920	0.64	+0.8
1,047,568	-		Psyr_0920	0.64	+0.4
1,047,568	-		Psyr_0920	0.64	-0.7
1,047,568	-		Psyr_0920	0.64	-2.6
1,047,568	-		Psyr_0920	0.64	-0.2
1,047,568	-		Psyr_0920	0.64	-2.9
1,047,568	-		Psyr_0920	0.64	-1.6
1,047,568	-		Psyr_0920	0.64	-0.7
1,047,568	-		Psyr_0920	0.64	+0.3
1,047,568	-		Psyr_0920	0.64	-1.0
1,047,568	-		Psyr_0920	0.64	-2.3
1,047,568	-		Psyr_0920	0.64	+0.5
1,047,644	-		Psyr_0920	0.67	-0.7
1,047,654	+		Psyr_0920	0.67	-0.2
1,047,654	+		Psyr_0920	0.67	+0.5
1,047,654	+		Psyr_0920	0.67	+1.4
1,047,654	+		Psyr_0920	0.67	+0.8
1,047,654	+		Psyr_0920	0.67	+0.8
1,047,654	+		Psyr_0920	0.67	+1.6
1,047,654	+		Psyr_0920	0.67	-1.2
1,047,654	+		Psyr_0920	0.67	-2.9
1,047,654	+		Psyr_0920	0.67	-0.2
1,047,654	+		Psyr_0920	0.67	-0.2
1,047,654	+		Psyr_0920	0.67	+0.2
1,047,655	-		Psyr_0920	0.67	-2.5
1,047,655	-		Psyr_0920	0.67	-1.7
1,047,655	-		Psyr_0920	0.67	+0.8
1,047,655	-		Psyr_0920	0.67	-1.2
1,047,655	-		Psyr_0920	0.67	+0.8
1,047,655	-		Psyr_0920	0.67	-0.7
1,047,655	-		Psyr_0920	0.67	+0.6
1,047,655	-		Psyr_0920	0.67	+0.4
1,047,663	+		Psyr_0920	0.68	-0.1
1,047,664	-		Psyr_0920	0.68	-0.5
1,047,850	+		Psyr_0920	0.75	-0.0
1,047,850	+		Psyr_0920	0.75	-2.1
1,047,850	+		Psyr_0920	0.75	-0.6
1,047,851	-		Psyr_0920	0.75	-0.3
1,047,973	+		Psyr_0920	0.80	-0.4
1,047,973	+		Psyr_0920	0.80	+0.1
1,047,974	-		Psyr_0920	0.80	-0.2
1,047,974	-		Psyr_0920	0.80	-0.3
1,048,043	+		Psyr_0920	0.83	-0.0
1,048,043	+		Psyr_0920	0.83	+0.3
1,048,043	+		Psyr_0920	0.83	-0.6
1,048,043	+		Psyr_0920	0.83	-1.7
1,048,043	+		Psyr_0920	0.83	+0.5
1,048,043	+		Psyr_0920	0.83	-1.2
1,048,044	-		Psyr_0920	0.83	-1.6
1,048,044	-		Psyr_0920	0.83	-0.2
1,048,158	+		Psyr_0920	0.87	-0.5
1,048,158	+		Psyr_0920	0.87	+1.8
1,048,159	-		Psyr_0920	0.87	-2.2
1,048,159	-		Psyr_0920	0.87	+1.4
1,048,173	+		Psyr_0920	0.88	+0.1
1,048,184	+		Psyr_0920	0.88	-1.5
1,048,184	+		Psyr_0920	0.88	+1.2
1,048,184	+		Psyr_0920	0.88	-2.9
1,048,184	+		Psyr_0920	0.88	+0.3
1,048,184	+		Psyr_0920	0.88	+1.8
1,048,184	+		Psyr_0920	0.88	+1.8
1,048,185	-		Psyr_0920	0.88	-2.2
1,048,185	-		Psyr_0920	0.88	-0.7
1,048,185	-		Psyr_0920	0.88	-0.7
1,048,185	-		Psyr_0920	0.88	-0.5
1,048,314	+				-0.5
1,048,315	-				-1.7
1,048,315	-				-0.2
1,048,315	-				-1.1
1,048,315	-				-1.5
1,048,325	+				+1.8
1,048,470	+				+0.1
1,048,473	+				+0.2
1,048,498	-				+0.8
1,048,612	+				+0.3
1,048,612	+				+0.7
1,048,616	+				-0.7
1,048,616	+				-0.7
1,048,622	+				+0.7
1,048,637	+				+1.2
1,048,743	+				-1.7
1,048,767	+				+0.3
1,048,767	+				-0.7
1,049,041	+		Psyr_0921	0.61	+0.5
1,049,041	+		Psyr_0921	0.61	-0.5