Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0907

Experiment: KB with Trimethoprim 125 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Trimethoprim 125 ug/ml
1,028,014	+		Psyr_0906	0.56	+1.6
1,028,015	-		Psyr_0906	0.56	-2.1
1,028,015	-		Psyr_0906	0.56	+0.3
1,028,015	-		Psyr_0906	0.56	+1.3
1,028,015	-		Psyr_0906	0.56	+0.1
1,028,135	+		Psyr_0906	0.62	-0.3
1,028,136	-		Psyr_0906	0.62	+0.3
1,028,255	-		Psyr_0906	0.68	-0.6
1,028,255	-		Psyr_0906	0.68	-0.8
1,028,255	-		Psyr_0906	0.68	+0.3
1,028,255	-		Psyr_0906	0.68	-0.1
1,028,255	-		Psyr_0906	0.68	-0.2
1,028,255	-		Psyr_0906	0.68	-1.5
1,028,255	-		Psyr_0906	0.68	+1.6
1,028,548	+		Psyr_0906	0.84	+0.2
1,028,704	+				+0.7
1,028,704	+				+0.2
1,028,745	-				+0.1
1,028,768	+				-0.5
1,028,853	+				-0.2
1,028,853	+				-0.6
1,028,853	+				-0.6
1,028,853	+				+0.6
1,028,853	+				-2.7
1,028,853	+				+0.8
1,028,854	-				-0.2
1,028,854	-				+1.8
1,028,881	+				+0.3
1,028,881	+				+0.1
1,028,881	+				+1.0
1,028,881	+				-1.2
1,028,881	+				+0.6
1,028,881	+				+1.3
1,028,881	+				+0.6
1,028,881	+				+1.1
1,028,881	+				+0.8
1,028,881	+				+0.4
1,028,881	+				-0.3
1,028,882	-				+1.5
1,028,882	-				-2.3
1,028,882	-				+1.8
1,028,882	-				+0.7
1,028,882	-				+0.5
1,028,882	-				-0.7
1,028,882	-				-1.5
1,028,883	+				-0.7
1,028,883	+				-0.6
1,028,883	+				+0.6
1,028,883	+				+0.2
1,028,883	+				-0.7
1,028,883	+				-0.1
1,028,883	+				+1.0
1,028,883	+				+0.5
1,028,883	+				+0.3
1,028,883	+				+1.1
1,028,883	+				-1.6
1,028,883	+				-1.6
1,028,883	+				-0.5
1,028,883	+				-0.3
1,028,883	+				+0.1
1,028,883	+				-1.9
1,028,883	+				+1.8
1,028,883	+				+0.3
1,028,883	+				+2.8
1,028,884	-				-1.2
1,028,884	-				+1.8
1,028,884	-				-0.0
1,028,884	-				+0.7
1,028,884	-				+0.4
1,028,884	-				+1.4
1,028,884	-				+0.3
1,028,884	-				-0.7
1,028,884	-				-1.0
1,028,884	-				-1.0
1,028,884	-				+0.7
1,028,884	-				-2.0
1,028,884	-				+1.8
1,028,884	-				+0.8
1,028,884	-				-0.4
1,028,884	-				-0.6
1,028,888	-				-0.4
1,028,919	+				+1.1
1,028,919	+				-1.3
1,028,919	+				+0.4
1,028,919	+				-0.6
1,028,920	-				+0.1
1,029,076	+		Psyr_0907	0.26	-0.2
1,029,076	+		Psyr_0907	0.26	-1.5
1,029,076	+		Psyr_0907	0.26	+0.3
1,029,077	-		Psyr_0907	0.26	-0.5
1,029,077	-		Psyr_0907	0.26	-1.3
1,029,258	-				+0.2
1,029,258	-				+0.5
1,029,265	+				+0.7
1,029,265	+				-0.6
1,029,326	+				+0.1
1,029,326	+				+0.8
1,029,326	+				+0.2
1,029,326	+				+0.9
1,029,326	+				+0.3
1,029,327	-				+3.8
1,029,327	-				+1.1
1,029,327	-				-0.2
1,029,498	+				-1.0
1,029,507	+				+0.0
1,029,507	+				+0.7
1,029,507	+				+1.2
1,029,508	-				+0.4
1,029,508	-				-0.7
1,029,887	+		Psyr_0908	0.42	+1.3
1,029,887	+		Psyr_0908	0.42	-0.7
1,029,887	+		Psyr_0908	0.42	-0.2
1,029,887	+		Psyr_0908	0.42	+0.0
1,029,887	+		Psyr_0908	0.42	+1.2
1,029,887	+		Psyr_0908	0.42	-0.2
1,029,887	+		Psyr_0908	0.42	+0.4
1,029,887	+		Psyr_0908	0.42	-0.2
1,029,887	+		Psyr_0908	0.42	-0.6
1,029,888	-		Psyr_0908	0.42	+0.3
1,029,888	-		Psyr_0908	0.42	+0.3
1,029,888	-		Psyr_0908	0.42	-0.4
1,029,888	-		Psyr_0908	0.42	+1.0
1,029,888	-		Psyr_0908	0.42	+0.6
1,029,888	-		Psyr_0908	0.42	+0.5
1,029,918	-		Psyr_0908	0.45	-0.4
1,029,928	-		Psyr_0908	0.46	+0.1
1,030,019	+		Psyr_0908	0.54	-0.4
1,030,019	+		Psyr_0908	0.54	-0.0
1,030,020	-		Psyr_0908	0.54	-0.5
1,030,020	-		Psyr_0908	0.54	+1.4
1,030,160	+		Psyr_0908	0.66	+1.1
1,030,160	+		Psyr_0908	0.66	+0.0
1,030,199	-		Psyr_0908	0.70	+0.2
1,030,199	-		Psyr_0908	0.70	-0.4
1,030,199	-		Psyr_0908	0.70	-0.5