Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0595

Experiment: KB with Trimethoprim 125 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0594 and Psyr_0595 are separated by 26 nucleotidesPsyr_0595 and Psyr_0596 are separated by 99 nucleotides Psyr_0594: Psyr_0594 - NH(3)-dependent NAD(+) synthetase, at 682,122 to 682,949 _0594 Psyr_0595: Psyr_0595 - Nicotinate phosphoribosyltransferase, at 682,976 to 684,199 _0595 Psyr_0596: Psyr_0596 - transcriptional regulator, LysR family, at 684,299 to 685,204 _0596 Position (kb) 682 683 684 685Strain fitness (log2 ratio) -2 -1 0 1 2at 682.092 kb on - strandat 682.964 kb on - strandat 682.967 kb on + strandat 682.968 kb on - strandat 683.031 kb on + strandat 683.032 kb on - strandat 683.032 kb on - strandat 683.032 kb on - strandat 683.123 kb on + strand, within Psyr_0595at 683.124 kb on - strand, within Psyr_0595at 683.373 kb on + strand, within Psyr_0595at 683.374 kb on - strand, within Psyr_0595at 683.374 kb on - strand, within Psyr_0595at 683.742 kb on + strand, within Psyr_0595at 683.743 kb on - strand, within Psyr_0595at 683.743 kb on - strand, within Psyr_0595at 683.996 kb on + strand, within Psyr_0595at 684.106 kb on - strandat 684.142 kb on - strandat 684.142 kb on - strandat 684.142 kb on - strandat 684.390 kb on + strand, within Psyr_0596at 684.390 kb on + strand, within Psyr_0596at 684.390 kb on + strandat 684.390 kb on + strand, within Psyr_0596at 684.390 kb on + strand, within Psyr_0596at 684.391 kb on - strand, within Psyr_0596at 684.391 kb on - strand, within Psyr_0596at 684.391 kb on - strand, within Psyr_0596at 684.393 kb on + strand, within Psyr_0596at 684.394 kb on - strand, within Psyr_0596at 684.404 kb on - strand, within Psyr_0596at 684.421 kb on - strand, within Psyr_0596at 684.523 kb on + strand, within Psyr_0596at 684.523 kb on + strand, within Psyr_0596at 684.523 kb on + strand, within Psyr_0596at 684.523 kb on + strand, within Psyr_0596at 684.523 kb on + strand, within Psyr_0596at 684.523 kb on + strand, within Psyr_0596at 684.523 kb on + strand, within Psyr_0596at 684.523 kb on + strand, within Psyr_0596at 684.523 kb on + strand, within Psyr_0596at 684.523 kb on + strand, within Psyr_0596at 684.523 kb on + strand, within Psyr_0596at 684.523 kb on + strand, within Psyr_0596at 684.523 kb on + strand, within Psyr_0596at 684.523 kb on + strand, within Psyr_0596at 684.524 kb on - strand, within Psyr_0596at 684.524 kb on - strand, within Psyr_0596at 684.524 kb on - strand, within Psyr_0596at 684.524 kb on - strand, within Psyr_0596at 684.524 kb on - strand, within Psyr_0596at 684.524 kb on - strand, within Psyr_0596at 684.524 kb on - strand, within Psyr_0596at 684.524 kb on - strand, within Psyr_0596at 684.524 kb on - strand, within Psyr_0596at 684.524 kb on - strand, within Psyr_0596at 684.524 kb on - strand, within Psyr_0596at 684.524 kb on - strand, within Psyr_0596at 684.524 kb on - strand, within Psyr_0596at 684.524 kb on - strand, within Psyr_0596at 684.524 kb on - strand, within Psyr_0596at 684.524 kb on - strand, within Psyr_0596at 684.524 kb on - strand, within Psyr_0596at 684.524 kb on - strand, within Psyr_0596at 684.524 kb on - strand, within Psyr_0596at 684.525 kb on + strand, within Psyr_0596at 684.525 kb on + strand, within Psyr_0596at 684.525 kb on + strand, within Psyr_0596at 684.525 kb on + strand, within Psyr_0596at 684.525 kb on + strand, within Psyr_0596at 684.525 kb on + strand, within Psyr_0596at 684.525 kb on + strand, within Psyr_0596at 684.525 kb on + strand, within Psyr_0596at 684.525 kb on + strand, within Psyr_0596at 684.525 kb on + strand, within Psyr_0596at 684.525 kb on + strand, within Psyr_0596at 684.525 kb on + strand, within Psyr_0596at 684.525 kb on + strand, within Psyr_0596at 684.525 kb on + strand, within Psyr_0596at 684.525 kb on + strand, within Psyr_0596at 684.525 kb on + strand, within Psyr_0596at 684.525 kb on + strand, within Psyr_0596at 684.525 kb on + strand, within Psyr_0596at 684.525 kb on + strand, within Psyr_0596at 684.525 kb on + strand, within Psyr_0596at 684.525 kb on + strand, within Psyr_0596at 684.526 kb on - strand, within Psyr_0596at 684.526 kb on - strand, within Psyr_0596at 684.526 kb on - strand, within Psyr_0596at 684.526 kb on - strand, within Psyr_0596at 684.526 kb on - strand, within Psyr_0596at 684.526 kb on - strand, within Psyr_0596at 684.526 kb on - strand, within Psyr_0596at 684.526 kb on - strand, within Psyr_0596at 684.526 kb on - strand, within Psyr_0596at 684.526 kb on - strand, within Psyr_0596at 684.526 kb on - strand, within Psyr_0596at 684.526 kb on - strand, within Psyr_0596at 684.526 kb on - strand, within Psyr_0596at 684.526 kb on - strand, within Psyr_0596at 684.526 kb on - strand, within Psyr_0596at 684.526 kb on - strand, within Psyr_0596at 684.526 kb on - strand, within Psyr_0596at 684.526 kb on - strand, within Psyr_0596at 684.526 kb on - strand, within Psyr_0596at 684.526 kb on - strand, within Psyr_0596at 684.526 kb on - strand, within Psyr_0596at 684.526 kb on - strand, within Psyr_0596at 684.526 kb on - strand, within Psyr_0596at 684.526 kb on - strand, within Psyr_0596at 684.526 kb on - strand, within Psyr_0596at 684.526 kb on - strand, within Psyr_0596at 684.526 kb on - strand, within Psyr_0596at 684.526 kb on - strand, within Psyr_0596at 684.571 kb on - strand, within Psyr_0596at 684.759 kb on + strand, within Psyr_0596at 684.759 kb on + strand, within Psyr_0596at 684.760 kb on - strand, within Psyr_0596at 684.760 kb on - strand, within Psyr_0596

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Trimethoprim 125 ug/ml
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682,092 - -1.1
682,964 - -1.7
682,967 + -1.5
682,968 - +0.3
683,031 + +0.1
683,032 - +0.9
683,032 - -1.1
683,032 - -0.8
683,123 + Psyr_0595 0.12 -1.2
683,124 - Psyr_0595 0.12 -0.7
683,373 + Psyr_0595 0.32 -1.5
683,374 - Psyr_0595 0.33 +0.1
683,374 - Psyr_0595 0.33 -0.8
683,742 + Psyr_0595 0.63 -0.9
683,743 - Psyr_0595 0.63 -2.4
683,743 - Psyr_0595 0.63 -0.7
683,996 + Psyr_0595 0.83 -0.2
684,106 - +0.6
684,142 - -1.3
684,142 - -2.5
684,142 - -0.7
684,390 + Psyr_0596 0.10 +0.1
684,390 + Psyr_0596 0.10 +0.2
684,390 + +0.3
684,390 + Psyr_0596 0.10 -1.3
684,390 + Psyr_0596 0.10 +1.3
684,391 - Psyr_0596 0.10 +0.0
684,391 - Psyr_0596 0.10 +1.6
684,391 - Psyr_0596 0.10 +0.3
684,393 + Psyr_0596 0.10 +0.3
684,394 - Psyr_0596 0.10 +0.9
684,404 - Psyr_0596 0.12 -0.4
684,421 - Psyr_0596 0.13 +0.6
684,523 + Psyr_0596 0.25 +0.3
684,523 + Psyr_0596 0.25 -0.4
684,523 + Psyr_0596 0.25 +0.7
684,523 + Psyr_0596 0.25 -0.5
684,523 + Psyr_0596 0.25 -0.9
684,523 + Psyr_0596 0.25 -0.2
684,523 + Psyr_0596 0.25 +0.5
684,523 + Psyr_0596 0.25 +0.6
684,523 + Psyr_0596 0.25 +0.9
684,523 + Psyr_0596 0.25 +0.4
684,523 + Psyr_0596 0.25 -1.3
684,523 + Psyr_0596 0.25 -0.4
684,523 + Psyr_0596 0.25 +0.7
684,523 + Psyr_0596 0.25 -1.4
684,524 - Psyr_0596 0.25 -1.5
684,524 - Psyr_0596 0.25 +0.8
684,524 - Psyr_0596 0.25 +0.9
684,524 - Psyr_0596 0.25 -1.1
684,524 - Psyr_0596 0.25 +0.9
684,524 - Psyr_0596 0.25 -1.2
684,524 - Psyr_0596 0.25 +0.3
684,524 - Psyr_0596 0.25 +0.5
684,524 - Psyr_0596 0.25 +0.5
684,524 - Psyr_0596 0.25 +1.2
684,524 - Psyr_0596 0.25 +0.2
684,524 - Psyr_0596 0.25 -0.1
684,524 - Psyr_0596 0.25 +1.7
684,524 - Psyr_0596 0.25 -0.7
684,524 - Psyr_0596 0.25 +0.2
684,524 - Psyr_0596 0.25 +0.5
684,524 - Psyr_0596 0.25 +0.2
684,524 - Psyr_0596 0.25 +0.0
684,524 - Psyr_0596 0.25 +0.9
684,525 + Psyr_0596 0.25 +1.2
684,525 + Psyr_0596 0.25 -0.3
684,525 + Psyr_0596 0.25 -1.0
684,525 + Psyr_0596 0.25 -1.1
684,525 + Psyr_0596 0.25 +0.9
684,525 + Psyr_0596 0.25 -0.5
684,525 + Psyr_0596 0.25 +0.3
684,525 + Psyr_0596 0.25 +0.7
684,525 + Psyr_0596 0.25 +0.1
684,525 + Psyr_0596 0.25 +0.1
684,525 + Psyr_0596 0.25 -1.1
684,525 + Psyr_0596 0.25 -1.9
684,525 + Psyr_0596 0.25 -0.1
684,525 + Psyr_0596 0.25 +0.6
684,525 + Psyr_0596 0.25 -1.1
684,525 + Psyr_0596 0.25 +2.2
684,525 + Psyr_0596 0.25 +1.4
684,525 + Psyr_0596 0.25 -0.4
684,525 + Psyr_0596 0.25 -0.2
684,525 + Psyr_0596 0.25 +0.1
684,525 + Psyr_0596 0.25 +1.7
684,526 - Psyr_0596 0.25 -0.3
684,526 - Psyr_0596 0.25 +0.8
684,526 - Psyr_0596 0.25 -0.9
684,526 - Psyr_0596 0.25 +0.5
684,526 - Psyr_0596 0.25 +0.4
684,526 - Psyr_0596 0.25 -1.5
684,526 - Psyr_0596 0.25 -0.3
684,526 - Psyr_0596 0.25 +0.9
684,526 - Psyr_0596 0.25 -0.4
684,526 - Psyr_0596 0.25 -1.7
684,526 - Psyr_0596 0.25 +0.7
684,526 - Psyr_0596 0.25 +1.6
684,526 - Psyr_0596 0.25 +0.9
684,526 - Psyr_0596 0.25 +0.3
684,526 - Psyr_0596 0.25 +0.4
684,526 - Psyr_0596 0.25 +1.1
684,526 - Psyr_0596 0.25 +0.7
684,526 - Psyr_0596 0.25 -0.3
684,526 - Psyr_0596 0.25 -0.1
684,526 - Psyr_0596 0.25 +0.0
684,526 - Psyr_0596 0.25 +0.7
684,526 - Psyr_0596 0.25 -0.5
684,526 - Psyr_0596 0.25 +0.1
684,526 - Psyr_0596 0.25 +0.3
684,526 - Psyr_0596 0.25 +0.0
684,526 - Psyr_0596 0.25 -0.3
684,526 - Psyr_0596 0.25 +0.3
684,526 - Psyr_0596 0.25 -0.3
684,571 - Psyr_0596 0.30 -0.1
684,759 + Psyr_0596 0.51 -1.7
684,759 + Psyr_0596 0.51 +1.2
684,760 - Psyr_0596 0.51 -0.5
684,760 - Psyr_0596 0.51 +0.7

Or see this region's nucleotide sequence