Experiment: KB with Trimethoprim 125 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0574 and Psyr_0575 overlap by 1 nucleotides Psyr_0575 and Psyr_0576 are separated by 270 nucleotides
Psyr_0574: Psyr_0574 - protease FtsH subunit HflK, at 652,290 to 653,492
_0574
Psyr_0575: Psyr_0575 - protease FtsH subunit HflC, at 653,492 to 654,361
_0575
Psyr_0576: Psyr_0576 - ATP phosphoribosyltransferase regulatory subunit, putative, at 654,632 to 655,819
_0576
Position (kb) 653
654
655 Strain fitness (log2 ratio) -2
-1
0
1
2 at 652.528 kb on + strand, within Psyr_0574 at 652.548 kb on + strand, within Psyr_0574 at 652.548 kb on + strand, within Psyr_0574 at 652.548 kb on + strand, within Psyr_0574 at 652.548 kb on + strand, within Psyr_0574 at 652.550 kb on + strand, within Psyr_0574 at 652.551 kb on - strand, within Psyr_0574 at 652.560 kb on + strand, within Psyr_0574 at 652.560 kb on + strand, within Psyr_0574 at 652.560 kb on + strand, within Psyr_0574 at 652.560 kb on + strand, within Psyr_0574 at 652.560 kb on + strand, within Psyr_0574 at 652.560 kb on + strand, within Psyr_0574 at 652.560 kb on + strand, within Psyr_0574 at 652.560 kb on + strand, within Psyr_0574 at 652.560 kb on + strand, within Psyr_0574 at 652.561 kb on - strand, within Psyr_0574 at 652.561 kb on - strand, within Psyr_0574 at 652.561 kb on - strand, within Psyr_0574 at 652.641 kb on + strand, within Psyr_0574 at 652.641 kb on + strand, within Psyr_0574 at 652.665 kb on + strand, within Psyr_0574 at 652.665 kb on + strand, within Psyr_0574 at 652.666 kb on - strand, within Psyr_0574 at 652.666 kb on - strand, within Psyr_0574 at 652.695 kb on + strand, within Psyr_0574 at 652.762 kb on - strand, within Psyr_0574 at 653.064 kb on - strand, within Psyr_0574 at 653.123 kb on + strand, within Psyr_0574 at 653.192 kb on + strand, within Psyr_0574 at 653.329 kb on - strand, within Psyr_0574 at 653.329 kb on - strand, within Psyr_0574 at 653.393 kb on + strand at 653.470 kb on + strand at 653.470 kb on + strand at 653.470 kb on + strand at 653.470 kb on + strand at 653.470 kb on + strand at 653.470 kb on + strand at 653.471 kb on - strand at 653.471 kb on - strand at 653.474 kb on + strand at 653.518 kb on + strand at 653.561 kb on + strand at 653.561 kb on + strand at 653.561 kb on + strand at 653.561 kb on + strand at 653.562 kb on - strand at 653.565 kb on + strand at 653.565 kb on + strand at 653.565 kb on + strand at 653.566 kb on - strand at 653.566 kb on - strand at 653.566 kb on - strand at 653.566 kb on - strand at 653.654 kb on + strand, within Psyr_0575 at 653.756 kb on + strand, within Psyr_0575 at 653.792 kb on + strand, within Psyr_0575 at 653.792 kb on + strand, within Psyr_0575 at 653.792 kb on + strand, within Psyr_0575 at 653.792 kb on + strand, within Psyr_0575 at 654.043 kb on + strand, within Psyr_0575 at 654.044 kb on - strand, within Psyr_0575 at 654.212 kb on + strand, within Psyr_0575 at 654.213 kb on - strand, within Psyr_0575 at 654.224 kb on + strand, within Psyr_0575 at 654.245 kb on + strand, within Psyr_0575 at 654.254 kb on + strand, within Psyr_0575 at 654.360 kb on - strand at 654.363 kb on + strand at 654.363 kb on + strand at 654.363 kb on + strand at 654.363 kb on + strand at 654.364 kb on - strand at 654.364 kb on - strand at 654.364 kb on - strand at 654.405 kb on + strand at 654.421 kb on + strand at 654.421 kb on + strand at 654.421 kb on + strand at 654.421 kb on + strand at 654.421 kb on + strand at 654.421 kb on + strand at 654.421 kb on + strand at 654.421 kb on + strand at 654.421 kb on + strand at 654.558 kb on + strand at 654.678 kb on + strand at 654.708 kb on + strand at 654.901 kb on + strand, within Psyr_0576 at 655.005 kb on + strand, within Psyr_0576
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Trimethoprim 125 ug/ml remove 652,528 + Psyr_0574 0.20 -1.1 652,548 + Psyr_0574 0.21 -0.7 652,548 + Psyr_0574 0.21 +1.9 652,548 + Psyr_0574 0.21 -0.4 652,548 + Psyr_0574 0.21 -0.7 652,550 + Psyr_0574 0.22 -1.7 652,551 - Psyr_0574 0.22 -0.7 652,560 + Psyr_0574 0.22 -1.4 652,560 + Psyr_0574 0.22 -0.5 652,560 + Psyr_0574 0.22 -2.2 652,560 + Psyr_0574 0.22 -0.1 652,560 + Psyr_0574 0.22 +0.2 652,560 + Psyr_0574 0.22 -0.1 652,560 + Psyr_0574 0.22 -0.1 652,560 + Psyr_0574 0.22 -0.7 652,560 + Psyr_0574 0.22 -0.3 652,561 - Psyr_0574 0.23 -1.1 652,561 - Psyr_0574 0.23 -2.1 652,561 - Psyr_0574 0.23 -0.1 652,641 + Psyr_0574 0.29 +0.5 652,641 + Psyr_0574 0.29 -0.1 652,665 + Psyr_0574 0.31 -1.9 652,665 + Psyr_0574 0.31 -0.5 652,666 - Psyr_0574 0.31 -0.8 652,666 - Psyr_0574 0.31 -1.1 652,695 + Psyr_0574 0.34 +1.9 652,762 - Psyr_0574 0.39 -1.7 653,064 - Psyr_0574 0.64 -1.4 653,123 + Psyr_0574 0.69 +0.7 653,192 + Psyr_0574 0.75 -0.9 653,329 - Psyr_0574 0.86 -0.7 653,329 - Psyr_0574 0.86 -1.1 653,393 + -0.1 653,470 + +0.9 653,470 + +0.1 653,470 + -0.1 653,470 + -0.2 653,470 + -0.1 653,470 + -1.4 653,471 - +0.5 653,471 - -1.7 653,474 + +0.3 653,518 + -1.7 653,561 + -0.7 653,561 + -0.9 653,561 + +0.1 653,561 + +0.4 653,562 - +0.3 653,565 + -1.1 653,565 + +0.9 653,565 + -0.2 653,566 - -2.1 653,566 - -0.7 653,566 - -2.1 653,566 - -1.9 653,654 + Psyr_0575 0.19 -1.9 653,756 + Psyr_0575 0.30 -2.2 653,792 + Psyr_0575 0.34 -1.7 653,792 + Psyr_0575 0.34 -0.4 653,792 + Psyr_0575 0.34 -0.1 653,792 + Psyr_0575 0.34 -0.7 654,043 + Psyr_0575 0.63 -0.1 654,044 - Psyr_0575 0.63 -1.9 654,212 + Psyr_0575 0.83 -1.2 654,213 - Psyr_0575 0.83 -2.2 654,224 + Psyr_0575 0.84 -0.1 654,245 + Psyr_0575 0.87 -2.7 654,254 + Psyr_0575 0.88 -1.4 654,360 - +0.3 654,363 + +0.2 654,363 + +0.2 654,363 + +1.9 654,363 + -0.8 654,364 - -0.4 654,364 - -1.1 654,364 - +0.2 654,405 + +0.5 654,421 + +0.0 654,421 + -0.2 654,421 + +0.4 654,421 + -0.7 654,421 + -1.6 654,421 + +0.1 654,421 + -1.9 654,421 + +0.5 654,421 + -0.3 654,558 + -1.7 654,678 + -1.2 654,708 + +0.6 654,901 + Psyr_0576 0.23 +1.7 655,005 + Psyr_0576 0.31 -0.4
Or see this region's nucleotide sequence