Experiment: KB with Trimethoprim 125 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0570 and Psyr_0571 are separated by 0 nucleotides Psyr_0571 and Psyr_0572 are separated by 93 nucleotides Psyr_0572 and Psyr_0573 are separated by 12 nucleotides
Psyr_0570: Psyr_0570 - DNA mismatch repair protein MutL, at 647,607 to 649,553
_0570
Psyr_0571: Psyr_0571 - tRNA isopentenyltransferase, at 649,554 to 650,525
_0571
Psyr_0572: Psyr_0572 - RNA-binding protein Hfq, at 650,619 to 650,879
_0572
Psyr_0573: Psyr_0573 - GTP-binding protein HflX, at 650,892 to 652,193
_0573
Position (kb) 649
650
651 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 648.628 kb on + strand, within Psyr_0570 at 648.628 kb on + strand, within Psyr_0570 at 648.628 kb on + strand, within Psyr_0570 at 648.628 kb on + strand, within Psyr_0570 at 648.628 kb on + strand, within Psyr_0570 at 648.628 kb on + strand, within Psyr_0570 at 648.628 kb on + strand, within Psyr_0570 at 648.628 kb on + strand, within Psyr_0570 at 648.628 kb on + strand, within Psyr_0570 at 648.628 kb on + strand, within Psyr_0570 at 648.628 kb on + strand, within Psyr_0570 at 648.628 kb on + strand, within Psyr_0570 at 648.628 kb on + strand, within Psyr_0570 at 648.629 kb on - strand, within Psyr_0570 at 648.629 kb on - strand, within Psyr_0570 at 648.629 kb on - strand, within Psyr_0570 at 648.629 kb on - strand, within Psyr_0570 at 648.629 kb on - strand, within Psyr_0570 at 648.629 kb on - strand, within Psyr_0570 at 648.629 kb on - strand, within Psyr_0570 at 648.629 kb on - strand, within Psyr_0570 at 648.629 kb on - strand, within Psyr_0570 at 648.629 kb on - strand, within Psyr_0570 at 648.630 kb on + strand, within Psyr_0570 at 648.630 kb on + strand, within Psyr_0570 at 648.630 kb on + strand, within Psyr_0570 at 648.630 kb on + strand, within Psyr_0570 at 648.846 kb on + strand, within Psyr_0570 at 648.853 kb on - strand, within Psyr_0570 at 649.007 kb on + strand, within Psyr_0570 at 649.007 kb on + strand, within Psyr_0570 at 649.007 kb on + strand, within Psyr_0570 at 649.008 kb on - strand, within Psyr_0570 at 649.008 kb on - strand, within Psyr_0570 at 649.011 kb on + strand, within Psyr_0570 at 649.011 kb on + strand, within Psyr_0570 at 649.011 kb on + strand, within Psyr_0570 at 649.011 kb on + strand, within Psyr_0570 at 649.011 kb on + strand, within Psyr_0570 at 649.011 kb on + strand, within Psyr_0570 at 649.011 kb on + strand, within Psyr_0570 at 649.011 kb on + strand, within Psyr_0570 at 649.012 kb on - strand, within Psyr_0570 at 649.012 kb on - strand, within Psyr_0570 at 649.012 kb on - strand, within Psyr_0570 at 649.080 kb on + strand, within Psyr_0570 at 649.080 kb on + strand, within Psyr_0570 at 649.080 kb on + strand, within Psyr_0570 at 649.080 kb on + strand, within Psyr_0570 at 649.080 kb on + strand, within Psyr_0570 at 649.080 kb on + strand, within Psyr_0570 at 649.080 kb on + strand, within Psyr_0570 at 649.080 kb on + strand, within Psyr_0570 at 649.080 kb on + strand, within Psyr_0570 at 649.081 kb on - strand, within Psyr_0570 at 649.081 kb on - strand, within Psyr_0570 at 649.081 kb on - strand, within Psyr_0570 at 649.081 kb on - strand, within Psyr_0570 at 649.081 kb on - strand, within Psyr_0570 at 649.096 kb on + strand, within Psyr_0570 at 649.096 kb on + strand, within Psyr_0570 at 649.534 kb on + strand at 649.534 kb on + strand at 649.565 kb on - strand at 649.622 kb on - strand at 649.774 kb on - strand, within Psyr_0571 at 649.839 kb on - strand, within Psyr_0571 at 649.862 kb on + strand, within Psyr_0571 at 649.862 kb on + strand, within Psyr_0571 at 649.862 kb on + strand, within Psyr_0571 at 649.863 kb on - strand, within Psyr_0571 at 650.015 kb on + strand, within Psyr_0571 at 650.016 kb on - strand, within Psyr_0571 at 650.016 kb on - strand, within Psyr_0571 at 650.016 kb on - strand, within Psyr_0571 at 650.016 kb on - strand, within Psyr_0571 at 650.062 kb on - strand, within Psyr_0571 at 650.154 kb on + strand, within Psyr_0571 at 650.155 kb on - strand, within Psyr_0571 at 650.218 kb on + strand, within Psyr_0571 at 650.428 kb on + strand at 650.432 kb on + strand at 650.432 kb on + strand at 650.536 kb on + strand at 650.536 kb on + strand at 650.544 kb on + strand at 650.585 kb on + strand at 650.588 kb on + strand at 650.593 kb on + strand at 650.881 kb on - strand at 651.060 kb on + strand, within Psyr_0573 at 651.060 kb on + strand, within Psyr_0573 at 651.060 kb on + strand, within Psyr_0573 at 651.061 kb on - strand, within Psyr_0573 at 651.061 kb on - strand, within Psyr_0573 at 651.061 kb on - strand, within Psyr_0573 at 651.061 kb on - strand, within Psyr_0573 at 651.061 kb on - strand, within Psyr_0573 at 651.204 kb on - strand, within Psyr_0573 at 651.508 kb on - strand, within Psyr_0573 at 651.509 kb on + strand, within Psyr_0573 at 651.509 kb on + strand, within Psyr_0573 at 651.509 kb on + strand, within Psyr_0573
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Trimethoprim 125 ug/ml remove 648,628 + Psyr_0570 0.52 +0.6 648,628 + Psyr_0570 0.52 -2.1 648,628 + Psyr_0570 0.52 +0.6 648,628 + Psyr_0570 0.52 +1.5 648,628 + Psyr_0570 0.52 +1.7 648,628 + Psyr_0570 0.52 +0.3 648,628 + Psyr_0570 0.52 -0.6 648,628 + Psyr_0570 0.52 -1.1 648,628 + Psyr_0570 0.52 +4.1 648,628 + Psyr_0570 0.52 -0.2 648,628 + Psyr_0570 0.52 +0.4 648,628 + Psyr_0570 0.52 +0.7 648,628 + Psyr_0570 0.52 -1.4 648,629 - Psyr_0570 0.52 -0.1 648,629 - Psyr_0570 0.52 -0.1 648,629 - Psyr_0570 0.52 -1.9 648,629 - Psyr_0570 0.52 -0.9 648,629 - Psyr_0570 0.52 +2.1 648,629 - Psyr_0570 0.52 +1.4 648,629 - Psyr_0570 0.52 +0.4 648,629 - Psyr_0570 0.52 +1.2 648,629 - Psyr_0570 0.52 -1.9 648,629 - Psyr_0570 0.52 +0.9 648,630 + Psyr_0570 0.53 -1.3 648,630 + Psyr_0570 0.53 -0.8 648,630 + Psyr_0570 0.53 +0.4 648,630 + Psyr_0570 0.53 +0.0 648,846 + Psyr_0570 0.64 +0.5 648,853 - Psyr_0570 0.64 -0.9 649,007 + Psyr_0570 0.72 -0.6 649,007 + Psyr_0570 0.72 +1.3 649,007 + Psyr_0570 0.72 +1.1 649,008 - Psyr_0570 0.72 -0.9 649,008 - Psyr_0570 0.72 -0.3 649,011 + Psyr_0570 0.72 +1.2 649,011 + Psyr_0570 0.72 -0.2 649,011 + Psyr_0570 0.72 +1.6 649,011 + Psyr_0570 0.72 -0.2 649,011 + Psyr_0570 0.72 +1.5 649,011 + Psyr_0570 0.72 -0.3 649,011 + Psyr_0570 0.72 -0.5 649,011 + Psyr_0570 0.72 +0.3 649,012 - Psyr_0570 0.72 +0.9 649,012 - Psyr_0570 0.72 +0.9 649,012 - Psyr_0570 0.72 -0.4 649,080 + Psyr_0570 0.76 -2.6 649,080 + Psyr_0570 0.76 -0.6 649,080 + Psyr_0570 0.76 +0.4 649,080 + Psyr_0570 0.76 -0.3 649,080 + Psyr_0570 0.76 +1.2 649,080 + Psyr_0570 0.76 +0.1 649,080 + Psyr_0570 0.76 -1.3 649,080 + Psyr_0570 0.76 -1.4 649,080 + Psyr_0570 0.76 -0.1 649,081 - Psyr_0570 0.76 +0.5 649,081 - Psyr_0570 0.76 -0.1 649,081 - Psyr_0570 0.76 -1.5 649,081 - Psyr_0570 0.76 -0.1 649,081 - Psyr_0570 0.76 -2.2 649,096 + Psyr_0570 0.76 -0.1 649,096 + Psyr_0570 0.76 -0.2 649,534 + -1.0 649,534 + +1.9 649,565 - -0.6 649,622 - -0.1 649,774 - Psyr_0571 0.23 -1.0 649,839 - Psyr_0571 0.29 -1.9 649,862 + Psyr_0571 0.32 +0.9 649,862 + Psyr_0571 0.32 -0.1 649,862 + Psyr_0571 0.32 -0.1 649,863 - Psyr_0571 0.32 -0.6 650,015 + Psyr_0571 0.47 -0.6 650,016 - Psyr_0571 0.48 -0.1 650,016 - Psyr_0571 0.48 -0.1 650,016 - Psyr_0571 0.48 -0.1 650,016 - Psyr_0571 0.48 -2.4 650,062 - Psyr_0571 0.52 -0.1 650,154 + Psyr_0571 0.62 -0.6 650,155 - Psyr_0571 0.62 -2.5 650,218 + Psyr_0571 0.68 +0.9 650,428 + +0.9 650,432 + -2.4 650,432 + -1.1 650,536 + +0.4 650,536 + +0.6 650,544 + -0.4 650,585 + +0.4 650,588 + -0.3 650,593 + +0.0 650,881 - +0.9 651,060 + Psyr_0573 0.13 -0.4 651,060 + Psyr_0573 0.13 +0.1 651,060 + Psyr_0573 0.13 -0.6 651,061 - Psyr_0573 0.13 -1.5 651,061 - Psyr_0573 0.13 -1.4 651,061 - Psyr_0573 0.13 -2.5 651,061 - Psyr_0573 0.13 +0.4 651,061 - Psyr_0573 0.13 -1.8 651,204 - Psyr_0573 0.24 +0.4 651,508 - Psyr_0573 0.47 +0.2 651,509 + Psyr_0573 0.47 -0.1 651,509 + Psyr_0573 0.47 +0.4 651,509 + Psyr_0573 0.47 -0.5
Or see this region's nucleotide sequence