Experiment: KB with Trimethoprim 125 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0547 and Psyr_0548 overlap by 10 nucleotides Psyr_0548 and Psyr_0549 are separated by 145 nucleotides Psyr_0549 and Psyr_0550 are separated by 88 nucleotides Psyr_0550 and Psyr_0551 are separated by 76 nucleotides
Psyr_0547: Psyr_0547 - Conserved hypothetical protein 52, at 619,676 to 620,323
_0547
Psyr_0548: Psyr_0548 - Protein of unknown function DUF1249, at 620,314 to 620,766
_0548
Psyr_0549: Psyr_0549 - Metallophosphoesterase, at 620,912 to 621,718
_0549
Psyr_0550: Psyr_0550 - Protein of unknown function UPF0227, at 621,807 to 622,424
_0550
Psyr_0551: Psyr_0551 - DNA topoisomerase IV subunit B, at 622,501 to 624,405
_0551
Position (kb) 620
621
622 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 620.081 kb on + strand, within Psyr_0547 at 620.081 kb on + strand, within Psyr_0547 at 620.081 kb on + strand, within Psyr_0547 at 620.081 kb on + strand, within Psyr_0547 at 620.081 kb on + strand, within Psyr_0547 at 620.081 kb on + strand, within Psyr_0547 at 620.081 kb on + strand, within Psyr_0547 at 620.082 kb on - strand, within Psyr_0547 at 620.082 kb on - strand, within Psyr_0547 at 620.082 kb on - strand, within Psyr_0547 at 620.082 kb on - strand, within Psyr_0547 at 620.082 kb on - strand, within Psyr_0547 at 620.082 kb on - strand, within Psyr_0547 at 620.082 kb on - strand, within Psyr_0547 at 620.082 kb on - strand, within Psyr_0547 at 620.082 kb on - strand, within Psyr_0547 at 620.313 kb on + strand at 620.314 kb on - strand at 620.314 kb on - strand at 620.327 kb on + strand at 620.328 kb on - strand at 620.328 kb on - strand at 620.328 kb on - strand at 620.387 kb on - strand, within Psyr_0548 at 620.478 kb on - strand, within Psyr_0548 at 620.510 kb on - strand, within Psyr_0548 at 620.584 kb on + strand, within Psyr_0548 at 620.584 kb on + strand, within Psyr_0548 at 620.584 kb on + strand, within Psyr_0548 at 620.584 kb on + strand, within Psyr_0548 at 620.584 kb on + strand, within Psyr_0548 at 620.584 kb on + strand, within Psyr_0548 at 620.585 kb on - strand, within Psyr_0548 at 620.647 kb on + strand, within Psyr_0548 at 620.647 kb on + strand, within Psyr_0548 at 620.647 kb on + strand, within Psyr_0548 at 620.647 kb on + strand, within Psyr_0548 at 620.648 kb on - strand, within Psyr_0548 at 620.648 kb on - strand, within Psyr_0548 at 620.648 kb on - strand, within Psyr_0548 at 621.117 kb on - strand, within Psyr_0549 at 621.448 kb on - strand, within Psyr_0549 at 621.486 kb on + strand, within Psyr_0549 at 621.733 kb on - strand at 621.768 kb on + strand at 621.773 kb on + strand at 621.773 kb on + strand at 621.774 kb on - strand at 621.774 kb on - strand at 621.774 kb on - strand at 621.774 kb on - strand at 621.774 kb on - strand at 621.832 kb on + strand at 621.833 kb on - strand at 621.833 kb on - strand at 621.833 kb on - strand at 621.833 kb on - strand at 621.834 kb on + strand at 621.834 kb on + strand at 621.834 kb on + strand at 621.834 kb on + strand at 621.834 kb on + strand at 621.834 kb on + strand at 621.834 kb on + strand at 621.834 kb on + strand at 621.834 kb on + strand at 621.834 kb on + strand at 621.834 kb on + strand at 621.834 kb on + strand at 621.834 kb on + strand at 621.834 kb on + strand at 621.834 kb on + strand at 621.834 kb on + strand at 621.834 kb on + strand at 621.834 kb on + strand at 621.834 kb on + strand at 621.835 kb on - strand at 621.835 kb on - strand at 621.835 kb on - strand at 621.835 kb on - strand at 621.835 kb on - strand at 621.835 kb on - strand at 621.835 kb on - strand at 621.835 kb on - strand at 621.835 kb on - strand at 621.835 kb on - strand at 621.835 kb on - strand at 621.835 kb on - strand at 621.835 kb on - strand at 621.835 kb on - strand at 621.835 kb on - strand at 621.835 kb on - strand at 621.835 kb on - strand at 621.835 kb on - strand at 621.835 kb on - strand at 621.835 kb on - strand at 621.835 kb on - strand at 621.835 kb on - strand at 621.835 kb on - strand at 621.835 kb on - strand at 621.835 kb on - strand at 621.835 kb on - strand at 621.835 kb on - strand at 621.835 kb on - strand at 621.835 kb on - strand at 621.835 kb on - strand at 622.030 kb on - strand, within Psyr_0550 at 622.032 kb on + strand, within Psyr_0550 at 622.032 kb on + strand, within Psyr_0550 at 622.032 kb on + strand, within Psyr_0550 at 622.140 kb on + strand, within Psyr_0550 at 622.287 kb on + strand, within Psyr_0550 at 622.422 kb on + strand at 622.422 kb on + strand at 622.422 kb on + strand at 622.422 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Trimethoprim 125 ug/ml remove 620,081 + Psyr_0547 0.62 -2.8 620,081 + Psyr_0547 0.62 -0.3 620,081 + Psyr_0547 0.62 +1.3 620,081 + Psyr_0547 0.62 -0.2 620,081 + Psyr_0547 0.62 -1.3 620,081 + Psyr_0547 0.62 +0.6 620,081 + Psyr_0547 0.62 -0.8 620,082 - Psyr_0547 0.63 -1.9 620,082 - Psyr_0547 0.63 -0.6 620,082 - Psyr_0547 0.63 -0.6 620,082 - Psyr_0547 0.63 -1.2 620,082 - Psyr_0547 0.63 +0.4 620,082 - Psyr_0547 0.63 +0.2 620,082 - Psyr_0547 0.63 +1.3 620,082 - Psyr_0547 0.63 +0.1 620,082 - Psyr_0547 0.63 +0.5 620,313 + -0.6 620,314 - +0.4 620,314 - -0.1 620,327 + -1.2 620,328 - +0.5 620,328 - -0.1 620,328 - +0.1 620,387 - Psyr_0548 0.16 -2.8 620,478 - Psyr_0548 0.36 -0.5 620,510 - Psyr_0548 0.43 +0.1 620,584 + Psyr_0548 0.60 -0.3 620,584 + Psyr_0548 0.60 -0.6 620,584 + Psyr_0548 0.60 -0.1 620,584 + Psyr_0548 0.60 -1.1 620,584 + Psyr_0548 0.60 -0.4 620,584 + Psyr_0548 0.60 +1.7 620,585 - Psyr_0548 0.60 -0.9 620,647 + Psyr_0548 0.74 +0.9 620,647 + Psyr_0548 0.74 +0.0 620,647 + Psyr_0548 0.74 +0.9 620,647 + Psyr_0548 0.74 -0.1 620,648 - Psyr_0548 0.74 +0.7 620,648 - Psyr_0548 0.74 -0.2 620,648 - Psyr_0548 0.74 +1.1 621,117 - Psyr_0549 0.25 -3.0 621,448 - Psyr_0549 0.66 -1.6 621,486 + Psyr_0549 0.71 -0.9 621,733 - -0.3 621,768 + -0.4 621,773 + -1.2 621,773 + -0.4 621,774 - +2.5 621,774 - +0.1 621,774 - +0.4 621,774 - -0.6 621,774 - +0.7 621,832 + -0.4 621,833 - -0.6 621,833 - -0.3 621,833 - +1.4 621,833 - +0.0 621,834 + -0.5 621,834 + +0.4 621,834 + -0.7 621,834 + -3.4 621,834 + -0.1 621,834 + +0.9 621,834 + +1.8 621,834 + +0.8 621,834 + +0.1 621,834 + +0.1 621,834 + +1.2 621,834 + +0.9 621,834 + +0.4 621,834 + -0.1 621,834 + -0.2 621,834 + +1.1 621,834 + -1.4 621,834 + -0.9 621,834 + +0.4 621,835 - +0.1 621,835 - +0.5 621,835 - +0.7 621,835 - +3.5 621,835 - +0.0 621,835 - +0.9 621,835 - +0.5 621,835 - +0.5 621,835 - -0.3 621,835 - -0.3 621,835 - -0.3 621,835 - -0.1 621,835 - +0.0 621,835 - -0.1 621,835 - +0.4 621,835 - +0.2 621,835 - +0.0 621,835 - -0.3 621,835 - -1.1 621,835 - -1.8 621,835 - -0.2 621,835 - -1.2 621,835 - -0.6 621,835 - +0.4 621,835 - -0.9 621,835 - +1.4 621,835 - +0.4 621,835 - -2.1 621,835 - -0.2 621,835 - -0.8 622,030 - Psyr_0550 0.36 -2.6 622,032 + Psyr_0550 0.36 +0.5 622,032 + Psyr_0550 0.36 +0.1 622,032 + Psyr_0550 0.36 -0.4 622,140 + Psyr_0550 0.54 +0.4 622,287 + Psyr_0550 0.78 +0.9 622,422 + +0.3 622,422 + +0.6 622,422 + -1.1 622,422 + +0.3
Or see this region's nucleotide sequence