Experiment: KB with Trimethoprim 125 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0527 and Psyr_0528 are separated by 300 nucleotides Psyr_0528 and Psyr_0529 overlap by 17 nucleotides
Psyr_0527: Psyr_0527 - type III effector HopAC1, at 589,549 to 595,677
_0527
Psyr_0528: Psyr_0528 - Carbamoyltransferase, at 595,978 to 597,735
_0528
Psyr_0529: Psyr_0529 - Glycosyl transferase, group 1, at 597,719 to 598,849
_0529
Position (kb) 595
596
597
598 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 595.004 kb on + strand, within Psyr_0527 at 595.024 kb on + strand, within Psyr_0527 at 595.024 kb on + strand, within Psyr_0527 at 595.171 kb on + strand at 595.172 kb on - strand at 595.259 kb on + strand at 595.624 kb on + strand at 595.750 kb on + strand at 595.778 kb on + strand at 595.778 kb on + strand at 595.778 kb on + strand at 595.778 kb on + strand at 595.778 kb on + strand at 595.779 kb on - strand at 595.779 kb on - strand at 595.779 kb on - strand at 595.782 kb on + strand at 595.782 kb on + strand at 595.782 kb on + strand at 595.782 kb on + strand at 595.782 kb on + strand at 595.782 kb on + strand at 595.783 kb on - strand at 595.783 kb on - strand at 595.786 kb on + strand at 595.786 kb on + strand at 595.786 kb on + strand at 595.787 kb on - strand at 595.787 kb on - strand at 595.787 kb on - strand at 595.787 kb on - strand at 595.814 kb on + strand at 595.875 kb on + strand at 595.875 kb on + strand at 595.880 kb on + strand at 595.895 kb on + strand at 595.961 kb on + strand at 595.976 kb on + strand at 596.038 kb on + strand at 596.749 kb on + strand, within Psyr_0528 at 596.749 kb on + strand, within Psyr_0528 at 597.043 kb on + strand, within Psyr_0528 at 597.043 kb on + strand, within Psyr_0528 at 597.043 kb on + strand, within Psyr_0528 at 597.122 kb on + strand, within Psyr_0528 at 597.122 kb on + strand, within Psyr_0528 at 597.520 kb on + strand, within Psyr_0528 at 597.718 kb on + strand at 597.718 kb on + strand at 597.719 kb on - strand at 597.744 kb on + strand at 597.764 kb on + strand at 597.797 kb on + strand at 597.797 kb on + strand at 597.912 kb on - strand, within Psyr_0529 at 597.912 kb on - strand, within Psyr_0529 at 598.022 kb on + strand, within Psyr_0529 at 598.022 kb on + strand, within Psyr_0529 at 598.022 kb on + strand, within Psyr_0529 at 598.022 kb on + strand, within Psyr_0529 at 598.022 kb on + strand, within Psyr_0529 at 598.022 kb on + strand, within Psyr_0529 at 598.022 kb on + strand, within Psyr_0529 at 598.022 kb on + strand, within Psyr_0529 at 598.023 kb on - strand, within Psyr_0529 at 598.023 kb on - strand, within Psyr_0529 at 598.023 kb on - strand, within Psyr_0529 at 598.026 kb on + strand, within Psyr_0529 at 598.026 kb on + strand, within Psyr_0529 at 598.217 kb on + strand, within Psyr_0529 at 598.517 kb on + strand, within Psyr_0529 at 598.517 kb on + strand, within Psyr_0529 at 598.685 kb on - strand, within Psyr_0529
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Trimethoprim 125 ug/ml remove 595,004 + Psyr_0527 0.89 +1.0 595,024 + Psyr_0527 0.89 -0.7 595,024 + Psyr_0527 0.89 -0.2 595,171 + +0.3 595,172 - -0.0 595,259 + -0.5 595,624 + +0.5 595,750 + +0.2 595,778 + +1.0 595,778 + -1.0 595,778 + +0.1 595,778 + -0.4 595,778 + +0.4 595,779 - -0.7 595,779 - -1.2 595,779 - +0.3 595,782 + -0.0 595,782 + +1.6 595,782 + +0.4 595,782 + +0.2 595,782 + -0.2 595,782 + -0.8 595,783 - -0.9 595,783 - +0.7 595,786 + +0.5 595,786 + +0.4 595,786 + -1.1 595,787 - -0.5 595,787 - +2.0 595,787 - -0.6 595,787 - -1.8 595,814 + +0.3 595,875 + -1.6 595,875 + +0.7 595,880 + -0.2 595,895 + -1.3 595,961 + +0.2 595,976 + +1.0 596,038 + -1.2 596,749 + Psyr_0528 0.44 -0.6 596,749 + Psyr_0528 0.44 -0.0 597,043 + Psyr_0528 0.61 -1.0 597,043 + Psyr_0528 0.61 +0.1 597,043 + Psyr_0528 0.61 -2.0 597,122 + Psyr_0528 0.65 -1.4 597,122 + Psyr_0528 0.65 -0.6 597,520 + Psyr_0528 0.88 +1.0 597,718 + +0.4 597,718 + -0.8 597,719 - +1.0 597,744 + -1.9 597,764 + -0.7 597,797 + -1.8 597,797 + -1.6 597,912 - Psyr_0529 0.17 -0.0 597,912 - Psyr_0529 0.17 -0.6 598,022 + Psyr_0529 0.27 -0.2 598,022 + Psyr_0529 0.27 +1.6 598,022 + Psyr_0529 0.27 +1.0 598,022 + Psyr_0529 0.27 -2.9 598,022 + Psyr_0529 0.27 -1.8 598,022 + Psyr_0529 0.27 -0.6 598,022 + Psyr_0529 0.27 -1.8 598,022 + Psyr_0529 0.27 -2.6 598,023 - Psyr_0529 0.27 -1.4 598,023 - Psyr_0529 0.27 +0.4 598,023 - Psyr_0529 0.27 -1.5 598,026 + Psyr_0529 0.27 -0.8 598,026 + Psyr_0529 0.27 -1.0 598,217 + Psyr_0529 0.44 -0.0 598,517 + Psyr_0529 0.71 +0.1 598,517 + Psyr_0529 0.71 -0.3 598,685 - Psyr_0529 0.85 -0.6
Or see this region's nucleotide sequence