Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0487

Experiment: KB with Trimethoprim 125 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0486 and Psyr_0487 are separated by 166 nucleotidesPsyr_0487 and Psyr_0488 are separated by 254 nucleotidesPsyr_0488 and Psyr_0489 are separated by 46 nucleotides Psyr_0486: Psyr_0486 - TonB, C-terminal, at 523,191 to 524,093 _0486 Psyr_0487: Psyr_0487 - glutathione synthase, at 524,260 to 525,219 _0487 Psyr_0488: Psyr_0488 - Response regulator receiver, at 525,474 to 525,884 _0488 Psyr_0489: Psyr_0489 - Response regulator receiver, at 525,931 to 526,296 _0489 Position (kb) 524 525 526Strain fitness (log2 ratio) -2 -1 0 1 2 3at 523.366 kb on + strand, within Psyr_0486at 523.366 kb on + strand, within Psyr_0486at 523.366 kb on + strand, within Psyr_0486at 523.366 kb on + strand, within Psyr_0486at 523.366 kb on + strand, within Psyr_0486at 523.367 kb on - strand, within Psyr_0486at 523.367 kb on - strand, within Psyr_0486at 523.415 kb on - strand, within Psyr_0486at 523.415 kb on - strand, within Psyr_0486at 523.415 kb on - strand, within Psyr_0486at 523.415 kb on - strand, within Psyr_0486at 523.444 kb on + strand, within Psyr_0486at 523.444 kb on + strand, within Psyr_0486at 523.444 kb on + strand, within Psyr_0486at 523.492 kb on + strand, within Psyr_0486at 523.493 kb on - strand, within Psyr_0486at 523.724 kb on + strand, within Psyr_0486at 523.724 kb on + strand, within Psyr_0486at 523.724 kb on + strand, within Psyr_0486at 523.724 kb on + strand, within Psyr_0486at 523.724 kb on + strand, within Psyr_0486at 523.725 kb on - strand, within Psyr_0486at 523.725 kb on - strand, within Psyr_0486at 523.725 kb on - strand, within Psyr_0486at 523.953 kb on + strand, within Psyr_0486at 523.953 kb on + strand, within Psyr_0486at 523.953 kb on + strand, within Psyr_0486at 523.954 kb on - strand, within Psyr_0486at 523.957 kb on + strand, within Psyr_0486at 523.957 kb on + strand, within Psyr_0486at 523.957 kb on + strand, within Psyr_0486at 523.957 kb on + strand, within Psyr_0486at 523.957 kb on + strand, within Psyr_0486at 523.957 kb on + strand, within Psyr_0486at 523.957 kb on + strand, within Psyr_0486at 523.957 kb on + strand, within Psyr_0486at 523.957 kb on + strand, within Psyr_0486at 523.957 kb on + strand, within Psyr_0486at 523.957 kb on + strand, within Psyr_0486at 523.957 kb on + strand, within Psyr_0486at 523.957 kb on + strand, within Psyr_0486at 523.957 kb on + strand, within Psyr_0486at 523.957 kb on + strand, within Psyr_0486at 523.958 kb on - strand, within Psyr_0486at 523.958 kb on - strand, within Psyr_0486at 523.958 kb on - strand, within Psyr_0486at 523.958 kb on - strand, within Psyr_0486at 523.958 kb on - strand, within Psyr_0486at 523.958 kb on - strand, within Psyr_0486at 523.958 kb on - strand, within Psyr_0486at 523.958 kb on - strand, within Psyr_0486at 523.958 kb on - strand, within Psyr_0486at 523.958 kb on - strand, within Psyr_0486at 523.958 kb on - strand, within Psyr_0486at 523.958 kb on - strand, within Psyr_0486at 523.958 kb on - strand, within Psyr_0486at 524.015 kb on + strandat 524.142 kb on + strandat 524.510 kb on - strand, within Psyr_0487at 525.107 kb on + strand, within Psyr_0487at 525.107 kb on + strand, within Psyr_0487at 525.107 kb on + strand, within Psyr_0487at 525.107 kb on + strand, within Psyr_0487at 525.107 kb on + strand, within Psyr_0487at 525.108 kb on - strand, within Psyr_0487at 525.108 kb on - strand, within Psyr_0487at 525.108 kb on - strand, within Psyr_0487at 525.108 kb on - strand, within Psyr_0487at 525.227 kb on - strandat 525.360 kb on + strandat 525.360 kb on + strandat 525.360 kb on + strandat 525.637 kb on + strand, within Psyr_0488at 525.637 kb on + strand, within Psyr_0488at 525.877 kb on + strandat 525.877 kb on + strandat 525.877 kb on + strandat 525.877 kb on + strandat 525.877 kb on + strandat 525.877 kb on + strandat 525.877 kb on + strandat 525.877 kb on + strandat 525.877 kb on + strandat 525.877 kb on + strandat 525.877 kb on + strandat 525.877 kb on + strandat 525.878 kb on - strandat 525.878 kb on - strandat 525.878 kb on - strandat 525.878 kb on - strandat 525.878 kb on - strandat 525.878 kb on - strandat 525.878 kb on - strandat 525.878 kb on - strandat 525.878 kb on - strandat 525.879 kb on - strandat 525.900 kb on + strandat 525.900 kb on + strandat 525.900 kb on + strandat 525.900 kb on + strandat 525.912 kb on - strandat 525.912 kb on - strandat 525.973 kb on + strand, within Psyr_0489at 526.156 kb on - strand, within Psyr_0489

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Trimethoprim 125 ug/ml
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523,366 + Psyr_0486 0.19 -0.4
523,366 + Psyr_0486 0.19 -1.5
523,366 + Psyr_0486 0.19 +0.9
523,366 + Psyr_0486 0.19 +0.6
523,366 + Psyr_0486 0.19 +0.8
523,367 - Psyr_0486 0.19 -0.1
523,367 - Psyr_0486 0.19 +1.6
523,415 - Psyr_0486 0.25 +0.2
523,415 - Psyr_0486 0.25 -0.0
523,415 - Psyr_0486 0.25 -0.0
523,415 - Psyr_0486 0.25 +0.6
523,444 + Psyr_0486 0.28 -0.0
523,444 + Psyr_0486 0.28 -0.9
523,444 + Psyr_0486 0.28 -0.3
523,492 + Psyr_0486 0.33 +0.3
523,493 - Psyr_0486 0.33 +1.1
523,724 + Psyr_0486 0.59 -0.7
523,724 + Psyr_0486 0.59 +0.4
523,724 + Psyr_0486 0.59 -0.1
523,724 + Psyr_0486 0.59 -0.6
523,724 + Psyr_0486 0.59 -0.1
523,725 - Psyr_0486 0.59 -0.2
523,725 - Psyr_0486 0.59 +0.8
523,725 - Psyr_0486 0.59 +0.2
523,953 + Psyr_0486 0.84 -0.9
523,953 + Psyr_0486 0.84 +0.4
523,953 + Psyr_0486 0.84 -0.5
523,954 - Psyr_0486 0.84 -1.2
523,957 + Psyr_0486 0.85 -0.4
523,957 + Psyr_0486 0.85 -0.9
523,957 + Psyr_0486 0.85 -0.0
523,957 + Psyr_0486 0.85 +0.1
523,957 + Psyr_0486 0.85 -1.5
523,957 + Psyr_0486 0.85 +0.3
523,957 + Psyr_0486 0.85 +0.4
523,957 + Psyr_0486 0.85 +2.6
523,957 + Psyr_0486 0.85 -0.4
523,957 + Psyr_0486 0.85 +0.5
523,957 + Psyr_0486 0.85 -0.5
523,957 + Psyr_0486 0.85 +1.0
523,957 + Psyr_0486 0.85 -0.4
523,957 + Psyr_0486 0.85 -0.3
523,957 + Psyr_0486 0.85 -0.1
523,958 - Psyr_0486 0.85 +0.1
523,958 - Psyr_0486 0.85 +0.6
523,958 - Psyr_0486 0.85 -0.6
523,958 - Psyr_0486 0.85 -0.6
523,958 - Psyr_0486 0.85 -0.0
523,958 - Psyr_0486 0.85 -0.4
523,958 - Psyr_0486 0.85 +0.2
523,958 - Psyr_0486 0.85 +1.4
523,958 - Psyr_0486 0.85 -0.1
523,958 - Psyr_0486 0.85 -1.6
523,958 - Psyr_0486 0.85 -0.4
523,958 - Psyr_0486 0.85 -0.9
523,958 - Psyr_0486 0.85 +0.1
524,015 + +0.1
524,142 + +0.1
524,510 - Psyr_0487 0.26 -0.3
525,107 + Psyr_0487 0.88 -2.0
525,107 + Psyr_0487 0.88 -0.3
525,107 + Psyr_0487 0.88 -1.2
525,107 + Psyr_0487 0.88 -2.0
525,107 + Psyr_0487 0.88 -0.0
525,108 - Psyr_0487 0.88 -0.6
525,108 - Psyr_0487 0.88 -1.8
525,108 - Psyr_0487 0.88 -1.6
525,108 - Psyr_0487 0.88 -1.3
525,227 - +0.1
525,360 + +1.2
525,360 + +0.8
525,360 + -1.2
525,637 + Psyr_0488 0.40 +1.0
525,637 + Psyr_0488 0.40 +3.0
525,877 + -1.3
525,877 + -0.2
525,877 + -1.7
525,877 + +0.9
525,877 + -0.1
525,877 + -0.7
525,877 + -1.6
525,877 + -0.5
525,877 + -0.8
525,877 + -0.9
525,877 + -0.1
525,877 + -0.7
525,878 - +0.6
525,878 - -1.9
525,878 - -2.1
525,878 - +0.3
525,878 - -0.3
525,878 - +0.4
525,878 - -0.7
525,878 - -2.7
525,878 - -1.2
525,879 - -1.8
525,900 + +0.8
525,900 + +1.0
525,900 + -0.9
525,900 + -0.3
525,912 - +0.2
525,912 - -1.0
525,973 + Psyr_0489 0.11 -2.2
526,156 - Psyr_0489 0.61 -1.2

Or see this region's nucleotide sequence