Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0452

Experiment: KB with Trimethoprim 125 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0451 and Psyr_0452 are separated by 122 nucleotidesPsyr_0452 and Psyr_0453 are separated by 106 nucleotidesPsyr_0453 and Psyr_0454 are separated by 131 nucleotides Psyr_0451: Psyr_0451 - regulatory protein, LysR:LysR, substrate-binding protein, at 486,927 to 487,853 _0451 Psyr_0452: Psyr_0452 - HylII, at 487,976 to 488,590 _0452 Psyr_0453: Psyr_0453 - 16S rRNA m(3)U-1498 methyltransferase, at 488,697 to 489,416 _0453 Psyr_0454: Psyr_0454 - adenosylmethionine-8-amino-7-oxononanoate aminotransferase apoenzyme, at 489,548 to 490,954 _0454 Position (kb) 487 488 489Strain fitness (log2 ratio) -2 -1 0 1 2at 487.435 kb on + strand, within Psyr_0451at 487.435 kb on + strand, within Psyr_0451at 487.435 kb on + strand, within Psyr_0451at 487.436 kb on - strand, within Psyr_0451at 487.436 kb on - strand, within Psyr_0451at 487.436 kb on - strand, within Psyr_0451at 487.541 kb on - strand, within Psyr_0451at 487.541 kb on - strand, within Psyr_0451at 487.651 kb on + strand, within Psyr_0451at 487.651 kb on + strand, within Psyr_0451at 487.651 kb on + strand, within Psyr_0451at 487.651 kb on + strand, within Psyr_0451at 487.652 kb on - strand, within Psyr_0451at 487.652 kb on - strand, within Psyr_0451at 487.652 kb on - strand, within Psyr_0451at 487.652 kb on - strand, within Psyr_0451at 487.652 kb on - strand, within Psyr_0451at 487.652 kb on - strand, within Psyr_0451at 487.752 kb on - strand, within Psyr_0451at 487.752 kb on - strand, within Psyr_0451at 487.813 kb on - strandat 487.813 kb on - strandat 487.865 kb on + strandat 487.872 kb on - strandat 487.872 kb on - strandat 487.894 kb on + strandat 487.894 kb on + strandat 487.904 kb on + strandat 487.904 kb on + strandat 487.904 kb on + strandat 487.904 kb on + strandat 487.904 kb on + strandat 487.904 kb on + strandat 487.904 kb on + strandat 487.904 kb on + strandat 487.904 kb on + strandat 487.905 kb on - strandat 487.905 kb on - strandat 487.905 kb on - strandat 487.905 kb on - strandat 487.905 kb on - strandat 487.905 kb on - strandat 487.905 kb on - strandat 487.905 kb on - strandat 487.905 kb on - strandat 487.905 kb on - strandat 487.905 kb on - strandat 487.905 kb on - strandat 487.905 kb on - strandat 487.905 kb on - strandat 487.947 kb on + strandat 487.947 kb on + strandat 487.947 kb on + strandat 487.948 kb on - strandat 487.956 kb on + strandat 487.969 kb on + strandat 487.979 kb on + strandat 487.979 kb on + strandat 487.979 kb on + strandat 487.979 kb on + strandat 487.979 kb on + strandat 487.979 kb on + strandat 487.979 kb on + strandat 487.980 kb on - strandat 487.980 kb on - strandat 487.980 kb on - strandat 487.980 kb on - strandat 487.982 kb on + strandat 488.108 kb on + strand, within Psyr_0452at 488.108 kb on + strand, within Psyr_0452at 488.108 kb on + strand, within Psyr_0452at 488.108 kb on + strand, within Psyr_0452at 488.108 kb on + strand, within Psyr_0452at 488.108 kb on + strand, within Psyr_0452at 488.108 kb on + strand, within Psyr_0452at 488.108 kb on + strand, within Psyr_0452at 488.108 kb on + strand, within Psyr_0452at 488.108 kb on + strand, within Psyr_0452at 488.108 kb on + strand, within Psyr_0452at 488.108 kb on + strand, within Psyr_0452at 488.109 kb on - strand, within Psyr_0452at 488.109 kb on - strand, within Psyr_0452at 488.109 kb on - strand, within Psyr_0452at 488.109 kb on - strand, within Psyr_0452at 488.109 kb on - strand, within Psyr_0452at 488.109 kb on - strand, within Psyr_0452at 488.109 kb on - strand, within Psyr_0452at 488.109 kb on - strand, within Psyr_0452at 488.109 kb on - strand, within Psyr_0452at 488.109 kb on - strand, within Psyr_0452at 488.109 kb on - strand, within Psyr_0452at 488.109 kb on - strand, within Psyr_0452at 488.109 kb on - strand, within Psyr_0452at 488.109 kb on - strand, within Psyr_0452at 488.109 kb on - strand, within Psyr_0452at 488.109 kb on - strand, within Psyr_0452at 488.109 kb on - strand, within Psyr_0452at 488.132 kb on + strand, within Psyr_0452at 488.133 kb on - strand, within Psyr_0452at 488.133 kb on - strand, within Psyr_0452at 488.133 kb on - strand, within Psyr_0452at 488.150 kb on + strand, within Psyr_0452at 488.210 kb on + strand, within Psyr_0452at 488.211 kb on - strand, within Psyr_0452at 488.211 kb on - strand, within Psyr_0452at 488.211 kb on - strand, within Psyr_0452at 488.211 kb on - strand, within Psyr_0452at 488.211 kb on - strand, within Psyr_0452at 488.231 kb on + strand, within Psyr_0452at 488.231 kb on + strand, within Psyr_0452at 488.231 kb on + strand, within Psyr_0452at 488.231 kb on + strand, within Psyr_0452at 488.232 kb on - strand, within Psyr_0452at 488.232 kb on - strand, within Psyr_0452at 488.328 kb on + strand, within Psyr_0452at 488.328 kb on + strand, within Psyr_0452at 488.329 kb on - strand, within Psyr_0452at 488.369 kb on + strand, within Psyr_0452at 488.370 kb on - strand, within Psyr_0452at 488.370 kb on - strand, within Psyr_0452at 488.468 kb on + strand, within Psyr_0452at 488.468 kb on + strand, within Psyr_0452at 488.468 kb on + strand, within Psyr_0452at 488.468 kb on + strand, within Psyr_0452at 488.469 kb on - strand, within Psyr_0452at 488.579 kb on + strandat 488.579 kb on + strandat 488.579 kb on + strandat 488.580 kb on - strandat 488.580 kb on - strandat 489.098 kb on + strand, within Psyr_0453at 489.099 kb on - strand, within Psyr_0453at 489.099 kb on - strand, within Psyr_0453at 489.340 kb on + strand, within Psyr_0453at 489.340 kb on + strand, within Psyr_0453at 489.340 kb on + strand, within Psyr_0453at 489.340 kb on + strand, within Psyr_0453at 489.340 kb on + strand, within Psyr_0453at 489.340 kb on + strand, within Psyr_0453at 489.340 kb on + strand, within Psyr_0453at 489.340 kb on + strand, within Psyr_0453at 489.341 kb on - strand, within Psyr_0453at 489.341 kb on - strand, within Psyr_0453at 489.341 kb on - strand, within Psyr_0453at 489.341 kb on - strand, within Psyr_0453at 489.341 kb on - strand, within Psyr_0453at 489.341 kb on - strand, within Psyr_0453at 489.549 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Trimethoprim 125 ug/ml
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487,435 + Psyr_0451 0.55 +0.3
487,435 + Psyr_0451 0.55 -0.4
487,435 + Psyr_0451 0.55 -0.2
487,436 - Psyr_0451 0.55 +0.2
487,436 - Psyr_0451 0.55 -1.8
487,436 - Psyr_0451 0.55 +0.0
487,541 - Psyr_0451 0.66 +0.6
487,541 - Psyr_0451 0.66 +0.1
487,651 + Psyr_0451 0.78 +0.8
487,651 + Psyr_0451 0.78 -1.3
487,651 + Psyr_0451 0.78 +0.9
487,651 + Psyr_0451 0.78 -0.8
487,652 - Psyr_0451 0.78 +0.7
487,652 - Psyr_0451 0.78 +0.7
487,652 - Psyr_0451 0.78 -0.8
487,652 - Psyr_0451 0.78 -1.0
487,652 - Psyr_0451 0.78 -0.6
487,652 - Psyr_0451 0.78 -1.9
487,752 - Psyr_0451 0.89 +0.2
487,752 - Psyr_0451 0.89 -0.4
487,813 - -0.5
487,813 - +0.6
487,865 + +0.6
487,872 - +0.2
487,872 - -0.1
487,894 + -0.4
487,894 + +0.2
487,904 + +0.0
487,904 + +0.6
487,904 + -0.2
487,904 + +1.0
487,904 + -0.2
487,904 + +0.3
487,904 + -1.0
487,904 + -0.4
487,904 + -0.4
487,905 - +0.3
487,905 - -0.8
487,905 - +0.8
487,905 - +0.2
487,905 - -0.2
487,905 - -0.1
487,905 - +1.4
487,905 - -0.2
487,905 - +0.0
487,905 - +1.0
487,905 - +0.2
487,905 - -0.4
487,905 - -0.6
487,905 - -0.4
487,947 + +1.2
487,947 + -1.2
487,947 + -1.0
487,948 - +0.4
487,956 + -0.4
487,969 + +0.2
487,979 + +0.2
487,979 + -0.1
487,979 + +0.8
487,979 + -0.2
487,979 + +0.4
487,979 + -0.4
487,979 + +0.6
487,980 - +0.5
487,980 - +0.5
487,980 - +0.4
487,980 - -0.5
487,982 + +0.5
488,108 + Psyr_0452 0.21 -0.3
488,108 + Psyr_0452 0.21 -2.0
488,108 + Psyr_0452 0.21 -0.7
488,108 + Psyr_0452 0.21 +0.4
488,108 + Psyr_0452 0.21 -2.0
488,108 + Psyr_0452 0.21 +1.0
488,108 + Psyr_0452 0.21 -0.9
488,108 + Psyr_0452 0.21 +1.2
488,108 + Psyr_0452 0.21 -0.1
488,108 + Psyr_0452 0.21 -1.7
488,108 + Psyr_0452 0.21 -0.1
488,108 + Psyr_0452 0.21 +1.0
488,109 - Psyr_0452 0.22 -1.2
488,109 - Psyr_0452 0.22 -1.0
488,109 - Psyr_0452 0.22 -1.6
488,109 - Psyr_0452 0.22 +0.4
488,109 - Psyr_0452 0.22 -0.9
488,109 - Psyr_0452 0.22 -1.0
488,109 - Psyr_0452 0.22 +0.0
488,109 - Psyr_0452 0.22 +0.3
488,109 - Psyr_0452 0.22 +0.2
488,109 - Psyr_0452 0.22 -2.1
488,109 - Psyr_0452 0.22 +0.4
488,109 - Psyr_0452 0.22 -0.4
488,109 - Psyr_0452 0.22 +0.2
488,109 - Psyr_0452 0.22 +1.3
488,109 - Psyr_0452 0.22 -1.2
488,109 - Psyr_0452 0.22 -2.2
488,109 - Psyr_0452 0.22 -1.6
488,132 + Psyr_0452 0.25 -1.0
488,133 - Psyr_0452 0.26 -0.2
488,133 - Psyr_0452 0.26 -1.3
488,133 - Psyr_0452 0.26 -1.9
488,150 + Psyr_0452 0.28 -0.2
488,210 + Psyr_0452 0.38 -0.6
488,211 - Psyr_0452 0.38 -0.1
488,211 - Psyr_0452 0.38 +0.4
488,211 - Psyr_0452 0.38 +0.8
488,211 - Psyr_0452 0.38 -0.0
488,211 - Psyr_0452 0.38 -2.4
488,231 + Psyr_0452 0.41 +2.2
488,231 + Psyr_0452 0.41 -0.3
488,231 + Psyr_0452 0.41 -1.0
488,231 + Psyr_0452 0.41 +0.2
488,232 - Psyr_0452 0.42 -0.6
488,232 - Psyr_0452 0.42 +0.1
488,328 + Psyr_0452 0.57 -1.3
488,328 + Psyr_0452 0.57 +0.3
488,329 - Psyr_0452 0.57 -0.4
488,369 + Psyr_0452 0.64 +0.0
488,370 - Psyr_0452 0.64 +1.3
488,370 - Psyr_0452 0.64 +0.3
488,468 + Psyr_0452 0.80 -0.8
488,468 + Psyr_0452 0.80 +0.7
488,468 + Psyr_0452 0.80 -0.2
488,468 + Psyr_0452 0.80 -0.4
488,469 - Psyr_0452 0.80 -0.3
488,579 + -0.4
488,579 + +0.6
488,579 + -0.6
488,580 - -0.1
488,580 - +0.7
489,098 + Psyr_0453 0.56 +0.9
489,099 - Psyr_0453 0.56 +1.0
489,099 - Psyr_0453 0.56 -0.3
489,340 + Psyr_0453 0.89 -0.3
489,340 + Psyr_0453 0.89 +0.1
489,340 + Psyr_0453 0.89 +0.7
489,340 + Psyr_0453 0.89 -0.3
489,340 + Psyr_0453 0.89 +0.1
489,340 + Psyr_0453 0.89 +1.0
489,340 + Psyr_0453 0.89 +1.0
489,340 + Psyr_0453 0.89 -0.7
489,341 - Psyr_0453 0.89 +0.4
489,341 - Psyr_0453 0.89 -0.6
489,341 - Psyr_0453 0.89 -1.3
489,341 - Psyr_0453 0.89 +1.0
489,341 - Psyr_0453 0.89 -0.6
489,341 - Psyr_0453 0.89 +1.1
489,549 + +0.2

Or see this region's nucleotide sequence