Experiment: KB with Trimethoprim 125 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0371 and Psyr_0372 overlap by 4 nucleotides Psyr_0372 and Psyr_0373 overlap by 1 nucleotides Psyr_0373 and Psyr_0374 are separated by 433 nucleotides
Psyr_0371: Psyr_0371 - conserved hypothetical protein, at 395,102 to 396,481
_0371
Psyr_0372: Psyr_0372 - CDS, at 396,478 to 396,747
_0372
Psyr_0373: Psyr_0373 - CDS, at 396,747 to 397,178
_0373
Psyr_0374: Psyr_0374 - Phosphorylase, at 397,612 to 400,062
_0374
Position (kb) 396
397
398 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 395.830 kb on - strand, within Psyr_0371 at 396.165 kb on + strand, within Psyr_0371 at 396.165 kb on + strand, within Psyr_0371 at 396.165 kb on + strand, within Psyr_0371 at 396.165 kb on + strand, within Psyr_0371 at 396.166 kb on - strand, within Psyr_0371 at 396.166 kb on - strand, within Psyr_0371 at 396.238 kb on - strand, within Psyr_0371 at 396.238 kb on - strand, within Psyr_0371 at 396.238 kb on - strand, within Psyr_0371 at 396.272 kb on + strand, within Psyr_0371 at 396.272 kb on + strand, within Psyr_0371 at 396.272 kb on + strand, within Psyr_0371 at 396.272 kb on + strand, within Psyr_0371 at 396.272 kb on + strand, within Psyr_0371 at 396.273 kb on - strand, within Psyr_0371 at 396.273 kb on - strand, within Psyr_0371 at 396.273 kb on - strand, within Psyr_0371 at 396.273 kb on - strand, within Psyr_0371 at 396.273 kb on - strand, within Psyr_0371 at 396.273 kb on - strand, within Psyr_0371 at 396.273 kb on - strand, within Psyr_0371 at 396.482 kb on - strand at 396.566 kb on + strand, within Psyr_0372 at 396.567 kb on - strand, within Psyr_0372 at 396.588 kb on + strand, within Psyr_0372 at 396.589 kb on - strand, within Psyr_0372 at 396.589 kb on - strand, within Psyr_0372 at 397.123 kb on + strand, within Psyr_0373 at 397.123 kb on + strand, within Psyr_0373 at 397.124 kb on - strand, within Psyr_0373 at 397.140 kb on + strand at 397.140 kb on + strand at 397.222 kb on + strand at 397.222 kb on + strand at 397.222 kb on + strand at 397.222 kb on + strand at 397.222 kb on + strand at 397.222 kb on + strand at 397.222 kb on + strand at 397.222 kb on + strand at 397.222 kb on + strand at 397.222 kb on + strand at 397.222 kb on + strand at 397.222 kb on + strand at 397.222 kb on + strand at 397.222 kb on + strand at 397.222 kb on + strand at 397.222 kb on + strand at 397.223 kb on - strand at 397.223 kb on - strand at 397.223 kb on - strand at 397.223 kb on - strand at 397.223 kb on - strand at 397.223 kb on - strand at 397.223 kb on - strand at 397.223 kb on - strand at 397.223 kb on - strand at 397.223 kb on - strand at 397.223 kb on - strand at 397.223 kb on - strand at 397.223 kb on - strand at 397.223 kb on - strand at 397.223 kb on - strand at 397.224 kb on + strand at 397.224 kb on + strand at 397.224 kb on + strand at 397.224 kb on + strand at 397.224 kb on + strand at 397.225 kb on - strand at 397.225 kb on - strand at 397.225 kb on - strand at 397.225 kb on - strand at 397.225 kb on - strand at 397.225 kb on - strand at 397.225 kb on - strand at 397.225 kb on - strand at 397.225 kb on - strand at 397.225 kb on - strand at 397.225 kb on - strand at 397.225 kb on - strand at 397.225 kb on - strand at 397.225 kb on - strand at 397.225 kb on - strand at 397.226 kb on + strand at 397.226 kb on + strand at 397.226 kb on + strand at 397.226 kb on + strand at 397.226 kb on + strand at 397.226 kb on + strand at 397.227 kb on - strand at 397.227 kb on - strand at 397.227 kb on - strand at 397.227 kb on - strand at 397.227 kb on - strand at 397.227 kb on - strand at 397.249 kb on + strand at 397.257 kb on + strand at 397.258 kb on - strand at 397.258 kb on - strand at 397.335 kb on - strand at 397.488 kb on + strand at 397.489 kb on - strand at 397.590 kb on + strand at 397.591 kb on - strand at 397.799 kb on + strand at 397.800 kb on - strand at 397.800 kb on - strand at 398.034 kb on + strand, within Psyr_0374 at 398.162 kb on + strand, within Psyr_0374 at 398.162 kb on + strand, within Psyr_0374 at 398.162 kb on + strand, within Psyr_0374 at 398.162 kb on + strand, within Psyr_0374 at 398.162 kb on + strand, within Psyr_0374 at 398.162 kb on + strand, within Psyr_0374 at 398.162 kb on + strand, within Psyr_0374 at 398.162 kb on + strand, within Psyr_0374 at 398.163 kb on - strand, within Psyr_0374 at 398.163 kb on - strand, within Psyr_0374 at 398.163 kb on - strand, within Psyr_0374 at 398.163 kb on - strand, within Psyr_0374 at 398.163 kb on - strand, within Psyr_0374 at 398.163 kb on - strand, within Psyr_0374 at 398.163 kb on - strand, within Psyr_0374 at 398.163 kb on - strand, within Psyr_0374 at 398.163 kb on - strand, within Psyr_0374 at 398.163 kb on - strand, within Psyr_0374 at 398.163 kb on - strand, within Psyr_0374 at 398.163 kb on - strand, within Psyr_0374 at 398.163 kb on - strand, within Psyr_0374 at 398.163 kb on - strand, within Psyr_0374 at 398.163 kb on - strand, within Psyr_0374 at 398.163 kb on - strand, within Psyr_0374
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Trimethoprim 125 ug/ml remove 395,830 - Psyr_0371 0.53 +0.6 396,165 + Psyr_0371 0.77 -0.8 396,165 + Psyr_0371 0.77 -1.0 396,165 + Psyr_0371 0.77 -1.3 396,165 + Psyr_0371 0.77 +1.6 396,166 - Psyr_0371 0.77 -0.4 396,166 - Psyr_0371 0.77 -0.2 396,238 - Psyr_0371 0.82 +0.2 396,238 - Psyr_0371 0.82 -0.1 396,238 - Psyr_0371 0.82 -0.6 396,272 + Psyr_0371 0.85 -0.1 396,272 + Psyr_0371 0.85 +0.1 396,272 + Psyr_0371 0.85 +0.9 396,272 + Psyr_0371 0.85 +1.1 396,272 + Psyr_0371 0.85 +0.4 396,273 - Psyr_0371 0.85 +0.5 396,273 - Psyr_0371 0.85 +0.7 396,273 - Psyr_0371 0.85 -0.6 396,273 - Psyr_0371 0.85 +2.0 396,273 - Psyr_0371 0.85 -1.6 396,273 - Psyr_0371 0.85 +1.8 396,273 - Psyr_0371 0.85 -0.3 396,482 - -0.3 396,566 + Psyr_0372 0.33 +0.0 396,567 - Psyr_0372 0.33 -1.0 396,588 + Psyr_0372 0.41 +0.1 396,589 - Psyr_0372 0.41 -0.3 396,589 - Psyr_0372 0.41 -1.8 397,123 + Psyr_0373 0.87 -1.3 397,123 + Psyr_0373 0.87 -0.1 397,124 - Psyr_0373 0.87 -1.1 397,140 + -1.1 397,140 + +1.0 397,222 + +1.3 397,222 + -0.1 397,222 + -0.2 397,222 + -0.0 397,222 + +0.2 397,222 + +0.3 397,222 + -0.5 397,222 + +1.0 397,222 + -0.5 397,222 + -1.2 397,222 + +0.0 397,222 + +2.0 397,222 + +1.7 397,222 + -0.1 397,222 + -0.5 397,222 + +0.5 397,223 - +0.0 397,223 - +0.0 397,223 - +2.0 397,223 - -1.1 397,223 - +2.6 397,223 - +0.4 397,223 - -0.8 397,223 - +1.7 397,223 - +0.0 397,223 - +0.9 397,223 - +0.3 397,223 - +0.8 397,223 - +0.2 397,223 - +0.4 397,223 - +0.9 397,224 + -0.2 397,224 + +0.2 397,224 + +0.1 397,224 + +0.4 397,224 + +1.2 397,225 - -0.2 397,225 - +2.8 397,225 - +0.8 397,225 - -1.1 397,225 - +1.2 397,225 - -0.3 397,225 - +0.7 397,225 - -0.1 397,225 - -1.6 397,225 - +1.5 397,225 - +1.6 397,225 - +1.0 397,225 - +0.3 397,225 - +0.0 397,225 - +0.2 397,226 + -0.9 397,226 + +2.6 397,226 + +3.0 397,226 + -1.7 397,226 + +0.0 397,226 + +0.4 397,227 - -0.2 397,227 - +0.1 397,227 - +3.0 397,227 - +0.0 397,227 - -2.3 397,227 - -0.6 397,249 + -1.0 397,257 + -0.4 397,258 - -0.7 397,258 - +0.2 397,335 - -0.5 397,488 + -1.5 397,489 - +0.2 397,590 + +0.6 397,591 - -0.4 397,799 + -0.1 397,800 - +0.8 397,800 - -0.3 398,034 + Psyr_0374 0.17 -1.6 398,162 + Psyr_0374 0.22 +0.0 398,162 + Psyr_0374 0.22 -1.0 398,162 + Psyr_0374 0.22 +0.4 398,162 + Psyr_0374 0.22 -1.3 398,162 + Psyr_0374 0.22 +0.9 398,162 + Psyr_0374 0.22 -0.1 398,162 + Psyr_0374 0.22 -0.1 398,162 + Psyr_0374 0.22 -0.1 398,163 - Psyr_0374 0.22 +0.7 398,163 - Psyr_0374 0.22 -0.8 398,163 - Psyr_0374 0.22 -0.1 398,163 - Psyr_0374 0.22 -0.3 398,163 - Psyr_0374 0.22 +0.7 398,163 - Psyr_0374 0.22 -0.5 398,163 - Psyr_0374 0.22 +1.2 398,163 - Psyr_0374 0.22 -0.9 398,163 - Psyr_0374 0.22 +0.3 398,163 - Psyr_0374 0.22 -0.6 398,163 - Psyr_0374 0.22 +1.8 398,163 - Psyr_0374 0.22 +0.3 398,163 - Psyr_0374 0.22 +0.4 398,163 - Psyr_0374 0.22 -0.1 398,163 - Psyr_0374 0.22 +1.0 398,163 - Psyr_0374 0.22 -0.2
Or see this region's nucleotide sequence