Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0311

Experiment: KB with Trimethoprim 125 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0310 and Psyr_0311 are separated by 98 nucleotidesPsyr_0311 and Psyr_0312 are separated by 119 nucleotidesPsyr_0312 and Psyr_0313 are separated by 255 nucleotides Psyr_0310: Psyr_0310 - HNH endonuclease:S-type Pyocin, at 329,734 to 331,704 _0310 Psyr_0311: Psyr_0311 - CDS, at 331,803 to 332,150 _0311 Psyr_0312: Psyr_0312 - hypothetical protein, at 332,270 to 332,632 _0312 Psyr_0313: Psyr_0313 - Zinc-containing alcohol dehydrogenase superfamily, at 332,888 to 333,874 _0313 Position (kb) 331 332 333Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 330.920 kb on + strand, within Psyr_0310at 330.989 kb on + strand, within Psyr_0310at 330.989 kb on + strand, within Psyr_0310at 330.989 kb on + strand, within Psyr_0310at 330.989 kb on + strand, within Psyr_0310at 330.989 kb on + strand, within Psyr_0310at 330.989 kb on + strand, within Psyr_0310at 330.990 kb on - strand, within Psyr_0310at 330.990 kb on - strand, within Psyr_0310at 330.990 kb on - strand, within Psyr_0310at 330.990 kb on - strand, within Psyr_0310at 330.990 kb on - strand, within Psyr_0310at 330.992 kb on + strand, within Psyr_0310at 330.992 kb on + strand, within Psyr_0310at 330.992 kb on + strand, within Psyr_0310at 330.992 kb on + strand, within Psyr_0310at 330.992 kb on + strand, within Psyr_0310at 330.992 kb on + strand, within Psyr_0310at 330.992 kb on + strand, within Psyr_0310at 330.992 kb on + strand, within Psyr_0310at 330.993 kb on - strand, within Psyr_0310at 330.993 kb on - strand, within Psyr_0310at 330.993 kb on - strand, within Psyr_0310at 330.993 kb on - strand, within Psyr_0310at 330.993 kb on - strand, within Psyr_0310at 331.001 kb on + strand, within Psyr_0310at 331.001 kb on + strand, within Psyr_0310at 331.002 kb on - strand, within Psyr_0310at 331.024 kb on - strand, within Psyr_0310at 331.024 kb on - strand, within Psyr_0310at 331.102 kb on + strand, within Psyr_0310at 331.106 kb on + strand, within Psyr_0310at 331.106 kb on + strand, within Psyr_0310at 331.106 kb on + strand, within Psyr_0310at 331.106 kb on + strand, within Psyr_0310at 331.107 kb on - strand, within Psyr_0310at 331.132 kb on + strand, within Psyr_0310at 331.133 kb on - strand, within Psyr_0310at 331.133 kb on - strand, within Psyr_0310at 331.174 kb on + strand, within Psyr_0310at 331.174 kb on + strand, within Psyr_0310at 331.175 kb on - strand, within Psyr_0310at 331.192 kb on + strand, within Psyr_0310at 331.235 kb on - strand, within Psyr_0310at 331.238 kb on + strand, within Psyr_0310at 331.238 kb on + strand, within Psyr_0310at 331.238 kb on + strand, within Psyr_0310at 331.238 kb on + strand, within Psyr_0310at 331.238 kb on + strand, within Psyr_0310at 331.239 kb on - strand, within Psyr_0310at 331.239 kb on - strand, within Psyr_0310at 331.239 kb on - strand, within Psyr_0310at 331.239 kb on - strand, within Psyr_0310at 331.399 kb on + strand, within Psyr_0310at 331.399 kb on + strand, within Psyr_0310at 331.400 kb on - strand, within Psyr_0310at 331.474 kb on + strand, within Psyr_0310at 331.474 kb on + strand, within Psyr_0310at 331.475 kb on - strand, within Psyr_0310at 331.477 kb on + strand, within Psyr_0310at 331.477 kb on + strand, within Psyr_0310at 331.477 kb on + strand, within Psyr_0310at 331.478 kb on - strand, within Psyr_0310at 331.478 kb on - strand, within Psyr_0310at 331.478 kb on - strand, within Psyr_0310at 331.478 kb on - strand, within Psyr_0310at 331.494 kb on + strand, within Psyr_0310at 331.498 kb on - strand, within Psyr_0310at 331.498 kb on - strand, within Psyr_0310at 331.504 kb on - strand, within Psyr_0310at 331.504 kb on - strand, within Psyr_0310at 331.504 kb on - strand, within Psyr_0310at 331.532 kb on - strandat 331.590 kb on + strandat 331.591 kb on - strandat 331.608 kb on + strandat 331.608 kb on + strandat 331.609 kb on - strandat 331.611 kb on + strandat 331.648 kb on + strandat 331.673 kb on - strandat 331.676 kb on + strandat 331.676 kb on + strandat 331.677 kb on - strandat 331.678 kb on + strandat 331.678 kb on + strandat 331.678 kb on + strandat 331.678 kb on + strandat 331.679 kb on - strandat 331.679 kb on - strandat 331.679 kb on - strandat 331.679 kb on - strandat 331.679 kb on - strandat 331.679 kb on - strandat 331.679 kb on - strandat 331.679 kb on - strandat 331.679 kb on - strandat 331.680 kb on + strandat 331.680 kb on + strandat 331.681 kb on - strandat 331.705 kb on - strandat 331.716 kb on + strandat 331.766 kb on - strandat 331.792 kb on + strandat 331.792 kb on + strandat 331.793 kb on - strandat 331.793 kb on - strandat 331.793 kb on - strandat 331.804 kb on + strandat 331.804 kb on + strandat 332.230 kb on + strandat 332.230 kb on + strandat 332.233 kb on + strandat 332.264 kb on + strandat 332.338 kb on - strand, within Psyr_0312at 332.356 kb on + strand, within Psyr_0312at 332.356 kb on + strand, within Psyr_0312at 332.356 kb on + strand, within Psyr_0312at 332.359 kb on + strand, within Psyr_0312at 332.360 kb on - strand, within Psyr_0312at 332.362 kb on - strand, within Psyr_0312at 332.452 kb on - strand, within Psyr_0312at 332.452 kb on - strand, within Psyr_0312at 332.452 kb on - strand, within Psyr_0312at 332.488 kb on + strand, within Psyr_0312at 332.495 kb on + strand, within Psyr_0312at 332.495 kb on + strand, within Psyr_0312at 332.550 kb on + strand, within Psyr_0312at 332.550 kb on + strand, within Psyr_0312at 332.551 kb on - strand, within Psyr_0312at 332.551 kb on - strand, within Psyr_0312at 332.565 kb on - strand, within Psyr_0312at 332.565 kb on - strand, within Psyr_0312at 332.637 kb on + strandat 332.645 kb on - strandat 332.647 kb on + strandat 332.647 kb on + strandat 332.647 kb on + strandat 332.648 kb on - strandat 332.648 kb on - strandat 332.648 kb on - strandat 332.709 kb on + strandat 332.709 kb on + strandat 332.712 kb on + strandat 332.712 kb on + strandat 332.716 kb on + strandat 332.716 kb on + strandat 332.716 kb on + strandat 332.716 kb on + strandat 332.717 kb on - strandat 332.749 kb on + strandat 332.749 kb on + strandat 332.772 kb on + strandat 332.772 kb on + strandat 332.773 kb on - strandat 332.832 kb on + strandat 332.878 kb on + strandat 332.879 kb on - strandat 332.882 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Trimethoprim 125 ug/ml
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330,920 + Psyr_0310 0.60 -1.0
330,989 + Psyr_0310 0.64 -0.7
330,989 + Psyr_0310 0.64 -1.6
330,989 + Psyr_0310 0.64 -0.7
330,989 + Psyr_0310 0.64 -1.0
330,989 + Psyr_0310 0.64 +0.4
330,989 + Psyr_0310 0.64 -0.9
330,990 - Psyr_0310 0.64 +0.7
330,990 - Psyr_0310 0.64 +0.1
330,990 - Psyr_0310 0.64 -0.9
330,990 - Psyr_0310 0.64 -0.2
330,990 - Psyr_0310 0.64 -0.1
330,992 + Psyr_0310 0.64 -0.2
330,992 + Psyr_0310 0.64 -2.7
330,992 + Psyr_0310 0.64 -0.1
330,992 + Psyr_0310 0.64 +0.5
330,992 + Psyr_0310 0.64 -0.0
330,992 + Psyr_0310 0.64 -0.6
330,992 + Psyr_0310 0.64 +0.1
330,992 + Psyr_0310 0.64 -0.7
330,993 - Psyr_0310 0.64 +0.2
330,993 - Psyr_0310 0.64 +0.0
330,993 - Psyr_0310 0.64 -1.0
330,993 - Psyr_0310 0.64 +0.0
330,993 - Psyr_0310 0.64 +1.0
331,001 + Psyr_0310 0.64 +0.7
331,001 + Psyr_0310 0.64 -1.6
331,002 - Psyr_0310 0.64 -0.5
331,024 - Psyr_0310 0.65 -1.3
331,024 - Psyr_0310 0.65 -0.0
331,102 + Psyr_0310 0.69 -0.8
331,106 + Psyr_0310 0.70 -0.6
331,106 + Psyr_0310 0.70 +0.8
331,106 + Psyr_0310 0.70 -0.6
331,106 + Psyr_0310 0.70 +1.0
331,107 - Psyr_0310 0.70 -0.6
331,132 + Psyr_0310 0.71 -0.1
331,133 - Psyr_0310 0.71 -0.6
331,133 - Psyr_0310 0.71 -1.8
331,174 + Psyr_0310 0.73 -0.9
331,174 + Psyr_0310 0.73 -0.2
331,175 - Psyr_0310 0.73 -0.4
331,192 + Psyr_0310 0.74 -1.3
331,235 - Psyr_0310 0.76 -1.4
331,238 + Psyr_0310 0.76 +0.0
331,238 + Psyr_0310 0.76 +0.3
331,238 + Psyr_0310 0.76 -0.8
331,238 + Psyr_0310 0.76 +0.2
331,238 + Psyr_0310 0.76 +1.0
331,239 - Psyr_0310 0.76 +1.8
331,239 - Psyr_0310 0.76 +1.0
331,239 - Psyr_0310 0.76 +0.8
331,239 - Psyr_0310 0.76 +1.3
331,399 + Psyr_0310 0.84 -0.3
331,399 + Psyr_0310 0.84 -1.3
331,400 - Psyr_0310 0.85 -0.1
331,474 + Psyr_0310 0.88 -0.7
331,474 + Psyr_0310 0.88 +1.4
331,475 - Psyr_0310 0.88 -0.3
331,477 + Psyr_0310 0.88 -0.6
331,477 + Psyr_0310 0.88 +1.4
331,477 + Psyr_0310 0.88 +0.1
331,478 - Psyr_0310 0.88 -0.6
331,478 - Psyr_0310 0.88 -0.1
331,478 - Psyr_0310 0.88 +0.7
331,478 - Psyr_0310 0.88 +1.0
331,494 + Psyr_0310 0.89 +0.0
331,498 - Psyr_0310 0.89 +0.5
331,498 - Psyr_0310 0.89 +0.4
331,504 - Psyr_0310 0.90 +0.5
331,504 - Psyr_0310 0.90 -0.6
331,504 - Psyr_0310 0.90 +0.6
331,532 - -1.3
331,590 + +0.2
331,591 - -0.7
331,608 + +0.7
331,608 + +0.3
331,609 - +0.4
331,611 + -1.4
331,648 + +0.0
331,673 - +0.3
331,676 + -1.6
331,676 + -1.3
331,677 - +1.0
331,678 + -0.2
331,678 + -0.2
331,678 + +0.1
331,678 + -0.8
331,679 - +0.0
331,679 - -1.0
331,679 - -0.2
331,679 - -0.0
331,679 - +0.3
331,679 - -0.8
331,679 - +0.6
331,679 - +0.0
331,679 - -0.4
331,680 + +1.0
331,680 + +0.2
331,681 - -1.1
331,705 - -1.2
331,716 + -0.6
331,766 - -0.9
331,792 + -0.5
331,792 + -0.6
331,793 - +0.6
331,793 - -0.3
331,793 - -1.0
331,804 + -0.5
331,804 + -1.4
332,230 + -0.4
332,230 + -0.2
332,233 + -3.1
332,264 + +0.0
332,338 - Psyr_0312 0.19 +0.5
332,356 + Psyr_0312 0.24 -1.1
332,356 + Psyr_0312 0.24 -1.5
332,356 + Psyr_0312 0.24 -1.3
332,359 + Psyr_0312 0.25 -1.1
332,360 - Psyr_0312 0.25 -0.1
332,362 - Psyr_0312 0.25 -1.2
332,452 - Psyr_0312 0.50 +0.5
332,452 - Psyr_0312 0.50 -0.6
332,452 - Psyr_0312 0.50 +0.4
332,488 + Psyr_0312 0.60 +0.1
332,495 + Psyr_0312 0.62 +3.0
332,495 + Psyr_0312 0.62 -0.6
332,550 + Psyr_0312 0.77 +0.7
332,550 + Psyr_0312 0.77 +1.3
332,551 - Psyr_0312 0.77 -0.6
332,551 - Psyr_0312 0.77 -1.4
332,565 - Psyr_0312 0.81 -0.2
332,565 - Psyr_0312 0.81 -1.4
332,637 + +0.0
332,645 - -3.2
332,647 + -0.3
332,647 + -1.1
332,647 + -2.3
332,648 - -0.1
332,648 - -0.7
332,648 - -1.1
332,709 + -1.4
332,709 + -1.0
332,712 + -0.2
332,712 + -0.3
332,716 + +0.9
332,716 + +0.5
332,716 + -0.4
332,716 + -1.6
332,717 - -0.4
332,749 + +1.0
332,749 + -0.9
332,772 + -2.1
332,772 + +0.0
332,773 - +0.4
332,832 + -0.4
332,878 + +0.0
332,879 - -0.2
332,882 + +0.3

Or see this region's nucleotide sequence