Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0250

Experiment: KB with Trimethoprim 125 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0249 and Psyr_0250 are separated by 110 nucleotidesPsyr_0250 and Psyr_0251 are separated by 89 nucleotidesPsyr_0251 and Psyr_0252 are separated by 313 nucleotides Psyr_0249: Psyr_0249 - type II secretion system protein E:General secretory system II, protein E, N-terminal, at 261,709 to 263,493 _0249 Psyr_0250: Psyr_0250 - conserved hypothetical protein, at 263,604 to 263,987 _0250 Psyr_0251: Psyr_0251 - transcriptional regulator, AsnC family, at 264,077 to 264,547 _0251 Psyr_0252: Psyr_0252 - adenylate cyclase, at 264,861 to 266,315 _0252 Position (kb) 263 264Strain fitness (log2 ratio) -2 -1 0 1 2 3at 262.818 kb on + strand, within Psyr_0249at 262.818 kb on + strand, within Psyr_0249at 262.818 kb on + strand, within Psyr_0249at 262.819 kb on - strand, within Psyr_0249at 262.844 kb on + strand, within Psyr_0249at 262.845 kb on - strand, within Psyr_0249at 262.845 kb on - strand, within Psyr_0249at 262.867 kb on - strand, within Psyr_0249at 263.102 kb on + strand, within Psyr_0249at 263.102 kb on + strand, within Psyr_0249at 263.102 kb on + strand, within Psyr_0249at 263.103 kb on - strand, within Psyr_0249at 263.103 kb on - strand, within Psyr_0249at 263.103 kb on - strand, within Psyr_0249at 263.181 kb on - strand, within Psyr_0249at 263.181 kb on - strand, within Psyr_0249at 263.237 kb on + strand, within Psyr_0249at 263.237 kb on + strand, within Psyr_0249at 263.237 kb on + strand, within Psyr_0249at 263.237 kb on + strand, within Psyr_0249at 263.237 kb on + strand, within Psyr_0249at 263.237 kb on + strand, within Psyr_0249at 263.237 kb on + strand, within Psyr_0249at 263.237 kb on + strand, within Psyr_0249at 263.237 kb on + strand, within Psyr_0249at 263.237 kb on + strand, within Psyr_0249at 263.237 kb on + strand, within Psyr_0249at 263.237 kb on + strand, within Psyr_0249at 263.237 kb on + strand, within Psyr_0249at 263.238 kb on - strand, within Psyr_0249at 263.238 kb on - strand, within Psyr_0249at 263.238 kb on - strand, within Psyr_0249at 263.238 kb on - strand, within Psyr_0249at 263.238 kb on - strand, within Psyr_0249at 263.238 kb on - strand, within Psyr_0249at 263.238 kb on - strand, within Psyr_0249at 263.238 kb on - strand, within Psyr_0249at 263.238 kb on - strand, within Psyr_0249at 263.238 kb on - strand, within Psyr_0249at 263.238 kb on - strand, within Psyr_0249at 263.238 kb on - strand, within Psyr_0249at 263.415 kb on - strandat 263.537 kb on + strandat 263.537 kb on + strandat 263.568 kb on + strandat 263.568 kb on + strandat 263.568 kb on + strandat 263.568 kb on + strandat 263.569 kb on - strandat 263.569 kb on - strandat 263.569 kb on - strandat 263.803 kb on + strand, within Psyr_0250at 263.803 kb on + strand, within Psyr_0250at 263.803 kb on + strand, within Psyr_0250at 263.804 kb on - strand, within Psyr_0250at 263.906 kb on + strand, within Psyr_0250at 263.906 kb on + strand, within Psyr_0250at 263.906 kb on + strand, within Psyr_0250at 263.906 kb on + strand, within Psyr_0250at 263.907 kb on - strand, within Psyr_0250at 263.957 kb on + strandat 264.032 kb on + strandat 264.033 kb on - strandat 264.034 kb on + strandat 264.059 kb on + strandat 264.098 kb on + strandat 264.098 kb on + strandat 264.098 kb on + strandat 264.282 kb on + strand, within Psyr_0251at 264.283 kb on - strand, within Psyr_0251at 264.374 kb on + strand, within Psyr_0251at 264.374 kb on + strand, within Psyr_0251at 264.374 kb on + strand, within Psyr_0251at 264.374 kb on + strand, within Psyr_0251at 264.374 kb on + strand, within Psyr_0251at 264.374 kb on + strand, within Psyr_0251at 264.374 kb on + strand, within Psyr_0251at 264.374 kb on + strand, within Psyr_0251at 264.374 kb on + strand, within Psyr_0251at 264.374 kb on - strand, within Psyr_0251at 264.375 kb on - strand, within Psyr_0251at 264.375 kb on - strand, within Psyr_0251at 264.375 kb on - strand, within Psyr_0251at 264.375 kb on - strand, within Psyr_0251at 264.375 kb on - strand, within Psyr_0251at 264.375 kb on - strand, within Psyr_0251at 264.375 kb on - strand, within Psyr_0251at 264.375 kb on - strand, within Psyr_0251at 264.375 kb on - strand, within Psyr_0251at 264.375 kb on - strand, within Psyr_0251at 264.375 kb on - strand, within Psyr_0251at 264.375 kb on - strand, within Psyr_0251at 264.434 kb on + strand, within Psyr_0251at 264.651 kb on - strandat 264.671 kb on + strandat 264.671 kb on + strandat 264.671 kb on + strandat 264.671 kb on + strandat 264.671 kb on + strandat 264.671 kb on + strandat 264.672 kb on - strandat 264.672 kb on - strandat 264.672 kb on - strandat 264.672 kb on - strandat 264.672 kb on - strandat 264.672 kb on - strandat 264.735 kb on + strandat 264.735 kb on + strandat 264.735 kb on + strandat 264.736 kb on - strandat 264.736 kb on - strandat 264.785 kb on - strandat 264.785 kb on - strandat 264.841 kb on + strandat 264.842 kb on - strandat 264.842 kb on - strandat 264.862 kb on + strandat 264.862 kb on + strandat 264.862 kb on + strandat 264.862 kb on + strandat 264.863 kb on - strandat 264.863 kb on - strandat 264.863 kb on - strandat 264.863 kb on - strandat 264.863 kb on - strandat 264.863 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Trimethoprim 125 ug/ml
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262,818 + Psyr_0249 0.62 -1.5
262,818 + Psyr_0249 0.62 +0.4
262,818 + Psyr_0249 0.62 +1.0
262,819 - Psyr_0249 0.62 -0.6
262,844 + Psyr_0249 0.64 +0.5
262,845 - Psyr_0249 0.64 +0.3
262,845 - Psyr_0249 0.64 -0.2
262,867 - Psyr_0249 0.65 -0.1
263,102 + Psyr_0249 0.78 -0.9
263,102 + Psyr_0249 0.78 -0.5
263,102 + Psyr_0249 0.78 -0.2
263,103 - Psyr_0249 0.78 +0.8
263,103 - Psyr_0249 0.78 -0.6
263,103 - Psyr_0249 0.78 +0.8
263,181 - Psyr_0249 0.82 +0.4
263,181 - Psyr_0249 0.82 -0.6
263,237 + Psyr_0249 0.86 +0.7
263,237 + Psyr_0249 0.86 +0.1
263,237 + Psyr_0249 0.86 -0.8
263,237 + Psyr_0249 0.86 +1.1
263,237 + Psyr_0249 0.86 -0.4
263,237 + Psyr_0249 0.86 +0.3
263,237 + Psyr_0249 0.86 +0.1
263,237 + Psyr_0249 0.86 -0.2
263,237 + Psyr_0249 0.86 -0.2
263,237 + Psyr_0249 0.86 -0.5
263,237 + Psyr_0249 0.86 +0.5
263,237 + Psyr_0249 0.86 +0.5
263,237 + Psyr_0249 0.86 +0.5
263,238 - Psyr_0249 0.86 -0.9
263,238 - Psyr_0249 0.86 -0.9
263,238 - Psyr_0249 0.86 -1.6
263,238 - Psyr_0249 0.86 -0.8
263,238 - Psyr_0249 0.86 +0.7
263,238 - Psyr_0249 0.86 -1.9
263,238 - Psyr_0249 0.86 +0.8
263,238 - Psyr_0249 0.86 -0.5
263,238 - Psyr_0249 0.86 -0.6
263,238 - Psyr_0249 0.86 +1.6
263,238 - Psyr_0249 0.86 -0.1
263,238 - Psyr_0249 0.86 +0.1
263,415 - +0.1
263,537 + +0.4
263,537 + -1.1
263,568 + -0.9
263,568 + +1.5
263,568 + +1.1
263,568 + +1.3
263,569 - +0.5
263,569 - -0.4
263,569 - +1.1
263,803 + Psyr_0250 0.52 -0.0
263,803 + Psyr_0250 0.52 -0.3
263,803 + Psyr_0250 0.52 +0.1
263,804 - Psyr_0250 0.52 +0.2
263,906 + Psyr_0250 0.79 -0.1
263,906 + Psyr_0250 0.79 +0.2
263,906 + Psyr_0250 0.79 +1.5
263,906 + Psyr_0250 0.79 -0.3
263,907 - Psyr_0250 0.79 +0.8
263,957 + +0.1
264,032 + -0.2
264,033 - +2.1
264,034 + +1.1
264,059 + -0.4
264,098 + -1.0
264,098 + +0.2
264,098 + +0.9
264,282 + Psyr_0251 0.44 -0.3
264,283 - Psyr_0251 0.44 +2.0
264,374 + Psyr_0251 0.63 +0.3
264,374 + Psyr_0251 0.63 -0.9
264,374 + Psyr_0251 0.63 -1.5
264,374 + Psyr_0251 0.63 +1.0
264,374 + Psyr_0251 0.63 -0.4
264,374 + Psyr_0251 0.63 -1.5
264,374 + Psyr_0251 0.63 -0.4
264,374 + Psyr_0251 0.63 +0.0
264,374 + Psyr_0251 0.63 +0.5
264,374 - Psyr_0251 0.63 +0.1
264,375 - Psyr_0251 0.63 -1.0
264,375 - Psyr_0251 0.63 +0.4
264,375 - Psyr_0251 0.63 +0.9
264,375 - Psyr_0251 0.63 -1.2
264,375 - Psyr_0251 0.63 -2.4
264,375 - Psyr_0251 0.63 +0.1
264,375 - Psyr_0251 0.63 +0.9
264,375 - Psyr_0251 0.63 -1.3
264,375 - Psyr_0251 0.63 -0.1
264,375 - Psyr_0251 0.63 +0.1
264,375 - Psyr_0251 0.63 +0.0
264,375 - Psyr_0251 0.63 -0.4
264,434 + Psyr_0251 0.76 -0.1
264,651 - +1.0
264,671 + +0.6
264,671 + +1.0
264,671 + -0.8
264,671 + -0.0
264,671 + -1.0
264,671 + +0.7
264,672 - -0.2
264,672 - +0.2
264,672 - +0.3
264,672 - +1.0
264,672 - +0.9
264,672 - +3.0
264,735 + +0.3
264,735 + +3.0
264,735 + +1.5
264,736 - +0.2
264,736 - -0.1
264,785 - -1.5
264,785 - +0.9
264,841 + -0.3
264,842 - -0.7
264,842 - +0.7
264,862 + -0.4
264,862 + -1.0
264,862 + +0.2
264,862 + -0.0
264,863 - -0.6
264,863 - +0.3
264,863 - -0.1
264,863 - -0.5
264,863 - -0.5
264,863 - +0.7

Or see this region's nucleotide sequence