Experiment: KB with Trimethoprim 125 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0159 and Psyr_0160 are separated by 534 nucleotides Psyr_0160 and Psyr_0161 are separated by 298 nucleotides
Psyr_0159: Psyr_0159 - HAD-superfamily hydrolase, subfamily IA, variant 2, at 173,555 to 174,223
_0159
Psyr_0160: Psyr_0160 - GCN5-related N-acetyltransferase, at 174,758 to 175,615
_0160
Psyr_0161: Psyr_0161 - Protein of unknown function DUF861, at 175,914 to 176,627
_0161
Position (kb) 174
175
176 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 173.782 kb on + strand, within Psyr_0159 at 173.782 kb on + strand, within Psyr_0159 at 173.784 kb on + strand, within Psyr_0159 at 173.784 kb on + strand, within Psyr_0159 at 173.784 kb on + strand, within Psyr_0159 at 173.785 kb on - strand, within Psyr_0159 at 173.785 kb on - strand, within Psyr_0159 at 173.961 kb on + strand, within Psyr_0159 at 173.962 kb on - strand, within Psyr_0159 at 173.964 kb on + strand, within Psyr_0159 at 173.964 kb on + strand, within Psyr_0159 at 173.964 kb on + strand, within Psyr_0159 at 173.964 kb on + strand, within Psyr_0159 at 173.964 kb on + strand, within Psyr_0159 at 173.964 kb on + strand, within Psyr_0159 at 173.964 kb on + strand, within Psyr_0159 at 173.964 kb on + strand, within Psyr_0159 at 173.964 kb on + strand, within Psyr_0159 at 173.964 kb on + strand, within Psyr_0159 at 173.965 kb on - strand, within Psyr_0159 at 173.965 kb on - strand, within Psyr_0159 at 173.965 kb on - strand, within Psyr_0159 at 173.965 kb on - strand, within Psyr_0159 at 173.965 kb on - strand, within Psyr_0159 at 173.965 kb on - strand, within Psyr_0159 at 173.965 kb on - strand, within Psyr_0159 at 173.965 kb on - strand, within Psyr_0159 at 174.042 kb on + strand, within Psyr_0159 at 174.043 kb on - strand, within Psyr_0159 at 174.078 kb on + strand, within Psyr_0159 at 174.079 kb on - strand, within Psyr_0159 at 174.183 kb on + strand at 174.196 kb on + strand at 174.197 kb on - strand at 174.197 kb on - strand at 174.319 kb on + strand at 174.319 kb on + strand at 174.320 kb on - strand at 174.320 kb on - strand at 174.320 kb on - strand at 174.348 kb on + strand at 174.349 kb on - strand at 174.452 kb on - strand at 174.547 kb on + strand at 174.547 kb on + strand at 174.547 kb on + strand at 174.547 kb on + strand at 174.547 kb on + strand at 174.547 kb on + strand at 174.547 kb on + strand at 174.547 kb on + strand at 174.547 kb on + strand at 174.547 kb on + strand at 174.547 kb on + strand at 174.548 kb on - strand at 174.548 kb on - strand at 174.548 kb on - strand at 174.548 kb on - strand at 174.548 kb on - strand at 174.548 kb on - strand at 174.548 kb on - strand at 174.548 kb on - strand at 174.548 kb on - strand at 174.549 kb on + strand at 174.549 kb on + strand at 174.549 kb on + strand at 174.549 kb on + strand at 174.549 kb on + strand at 174.550 kb on - strand at 174.550 kb on - strand at 174.550 kb on - strand at 174.550 kb on - strand at 174.550 kb on - strand at 174.551 kb on + strand at 174.551 kb on + strand at 174.551 kb on + strand at 174.551 kb on + strand at 174.551 kb on + strand at 174.551 kb on + strand at 174.551 kb on + strand at 174.551 kb on + strand at 174.551 kb on + strand at 174.551 kb on + strand at 174.551 kb on + strand at 174.551 kb on + strand at 174.552 kb on - strand at 174.552 kb on - strand at 174.552 kb on - strand at 174.552 kb on - strand at 174.552 kb on - strand at 174.552 kb on - strand at 174.552 kb on - strand at 174.552 kb on - strand at 174.611 kb on + strand at 174.611 kb on + strand at 174.611 kb on + strand at 174.618 kb on + strand at 174.618 kb on + strand at 174.619 kb on - strand at 174.619 kb on - strand at 174.699 kb on + strand at 174.699 kb on + strand at 174.699 kb on + strand at 174.699 kb on + strand at 174.700 kb on - strand at 174.700 kb on - strand at 174.700 kb on - strand at 174.700 kb on - strand at 174.723 kb on + strand at 174.723 kb on + strand at 174.724 kb on - strand at 174.831 kb on + strand at 174.831 kb on + strand at 175.182 kb on + strand, within Psyr_0160 at 175.182 kb on + strand, within Psyr_0160 at 175.183 kb on - strand, within Psyr_0160 at 175.449 kb on - strand, within Psyr_0160 at 175.449 kb on - strand, within Psyr_0160 at 175.449 kb on - strand, within Psyr_0160 at 175.458 kb on + strand, within Psyr_0160 at 175.458 kb on + strand, within Psyr_0160 at 175.458 kb on + strand, within Psyr_0160 at 175.459 kb on - strand, within Psyr_0160 at 175.459 kb on - strand, within Psyr_0160 at 175.459 kb on - strand, within Psyr_0160 at 175.459 kb on - strand, within Psyr_0160 at 175.459 kb on - strand, within Psyr_0160 at 175.462 kb on + strand, within Psyr_0160 at 175.463 kb on - strand, within Psyr_0160 at 175.463 kb on - strand, within Psyr_0160 at 175.463 kb on - strand, within Psyr_0160 at 175.671 kb on + strand at 175.693 kb on + strand at 175.695 kb on + strand at 175.695 kb on + strand at 175.695 kb on + strand at 175.695 kb on + strand at 175.695 kb on + strand at 175.695 kb on + strand at 175.695 kb on + strand at 175.695 kb on + strand at 175.695 kb on + strand at 175.695 kb on + strand at 175.695 kb on + strand at 175.695 kb on + strand at 175.695 kb on + strand at 175.696 kb on - strand at 175.696 kb on - strand at 175.696 kb on - strand at 175.696 kb on - strand at 175.696 kb on - strand at 175.696 kb on - strand at 175.696 kb on - strand at 175.696 kb on - strand at 175.696 kb on - strand at 175.696 kb on - strand at 175.696 kb on - strand at 175.696 kb on - strand at 175.696 kb on - strand at 175.696 kb on - strand at 175.696 kb on - strand at 175.696 kb on - strand at 175.696 kb on - strand at 175.699 kb on + strand at 175.699 kb on + strand at 175.699 kb on + strand at 175.699 kb on + strand at 175.699 kb on + strand at 175.699 kb on + strand at 175.699 kb on + strand at 175.699 kb on + strand at 175.699 kb on + strand at 175.699 kb on + strand at 175.699 kb on + strand at 175.699 kb on + strand at 175.699 kb on + strand at 175.699 kb on + strand at 175.699 kb on + strand at 175.699 kb on + strand at 175.699 kb on + strand at 175.699 kb on + strand at 175.699 kb on + strand at 175.699 kb on + strand at 175.699 kb on + strand at 175.699 kb on + strand at 175.699 kb on + strand at 175.699 kb on + strand at 175.700 kb on - strand at 175.700 kb on - strand at 175.700 kb on - strand at 175.700 kb on - strand at 175.700 kb on - strand at 175.700 kb on - strand at 175.700 kb on - strand at 175.700 kb on - strand at 175.700 kb on - strand at 175.700 kb on - strand at 175.700 kb on - strand at 175.700 kb on - strand at 175.700 kb on - strand at 175.700 kb on - strand at 175.700 kb on - strand at 175.700 kb on - strand at 175.700 kb on - strand at 175.700 kb on - strand at 175.700 kb on - strand at 175.700 kb on - strand at 175.700 kb on - strand at 175.700 kb on - strand at 175.720 kb on + strand at 175.721 kb on - strand at 175.752 kb on + strand at 175.752 kb on + strand at 175.753 kb on - strand at 175.851 kb on + strand at 175.851 kb on + strand at 175.851 kb on + strand at 175.851 kb on + strand at 175.851 kb on + strand at 175.851 kb on + strand at 175.851 kb on + strand at 175.851 kb on + strand at 175.852 kb on - strand at 175.852 kb on - strand at 175.852 kb on - strand at 175.852 kb on - strand at 175.854 kb on - strand at 176.097 kb on + strand, within Psyr_0161 at 176.104 kb on - strand, within Psyr_0161 at 176.104 kb on - strand, within Psyr_0161 at 176.212 kb on + strand, within Psyr_0161 at 176.212 kb on + strand, within Psyr_0161 at 176.212 kb on + strand, within Psyr_0161 at 176.212 kb on + strand, within Psyr_0161 at 176.212 kb on + strand, within Psyr_0161 at 176.212 kb on + strand, within Psyr_0161 at 176.212 kb on + strand, within Psyr_0161 at 176.212 kb on + strand, within Psyr_0161 at 176.212 kb on + strand, within Psyr_0161 at 176.212 kb on + strand, within Psyr_0161 at 176.212 kb on + strand, within Psyr_0161 at 176.212 kb on + strand, within Psyr_0161 at 176.212 kb on + strand, within Psyr_0161 at 176.213 kb on - strand, within Psyr_0161 at 176.213 kb on - strand, within Psyr_0161 at 176.213 kb on - strand, within Psyr_0161 at 176.213 kb on - strand, within Psyr_0161 at 176.213 kb on - strand, within Psyr_0161 at 176.213 kb on - strand, within Psyr_0161 at 176.216 kb on + strand, within Psyr_0161 at 176.217 kb on - strand, within Psyr_0161 at 176.217 kb on - strand, within Psyr_0161 at 176.598 kb on + strand at 176.598 kb on + strand at 176.598 kb on + strand at 176.598 kb on + strand at 176.598 kb on + strand at 176.598 kb on + strand at 176.598 kb on + strand at 176.599 kb on - strand at 176.599 kb on - strand at 176.614 kb on - strand at 176.614 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Trimethoprim 125 ug/ml remove 173,782 + Psyr_0159 0.34 -0.7 173,782 + Psyr_0159 0.34 -1.0 173,784 + Psyr_0159 0.34 -1.3 173,784 + Psyr_0159 0.34 +0.3 173,784 + Psyr_0159 0.34 -0.7 173,785 - Psyr_0159 0.34 -0.5 173,785 - Psyr_0159 0.34 +0.3 173,961 + Psyr_0159 0.61 -1.6 173,962 - Psyr_0159 0.61 +0.5 173,964 + Psyr_0159 0.61 +0.1 173,964 + Psyr_0159 0.61 -0.1 173,964 + Psyr_0159 0.61 -0.1 173,964 + Psyr_0159 0.61 +0.5 173,964 + Psyr_0159 0.61 -0.7 173,964 + Psyr_0159 0.61 -0.9 173,964 + Psyr_0159 0.61 +0.1 173,964 + Psyr_0159 0.61 +0.5 173,964 + Psyr_0159 0.61 +0.5 173,964 + Psyr_0159 0.61 -1.1 173,965 - Psyr_0159 0.61 -1.0 173,965 - Psyr_0159 0.61 -0.2 173,965 - Psyr_0159 0.61 +3.1 173,965 - Psyr_0159 0.61 -2.5 173,965 - Psyr_0159 0.61 -0.8 173,965 - Psyr_0159 0.61 -0.4 173,965 - Psyr_0159 0.61 +0.7 173,965 - Psyr_0159 0.61 +0.2 174,042 + Psyr_0159 0.73 -1.0 174,043 - Psyr_0159 0.73 -2.6 174,078 + Psyr_0159 0.78 -0.5 174,079 - Psyr_0159 0.78 -1.3 174,183 + -0.3 174,196 + +0.8 174,197 - +0.2 174,197 - -0.6 174,319 + -1.7 174,319 + -0.8 174,320 - +0.5 174,320 - -0.8 174,320 - -0.6 174,348 + -0.3 174,349 - -0.7 174,452 - -0.1 174,547 + +0.1 174,547 + +0.2 174,547 + -0.7 174,547 + +0.8 174,547 + +0.3 174,547 + -1.2 174,547 + +0.4 174,547 + -0.3 174,547 + -0.7 174,547 + -0.6 174,547 + +0.1 174,548 - +0.9 174,548 - +0.1 174,548 - -0.1 174,548 - +0.4 174,548 - +0.5 174,548 - +0.5 174,548 - +0.6 174,548 - -1.1 174,548 - +0.1 174,549 + +0.2 174,549 + -0.7 174,549 + -0.6 174,549 + +0.8 174,549 + +0.1 174,550 - -0.5 174,550 - -1.1 174,550 - +0.0 174,550 - -1.3 174,550 - -1.4 174,551 + +0.4 174,551 + -0.6 174,551 + -1.4 174,551 + -0.6 174,551 + -0.6 174,551 + +0.3 174,551 + +0.1 174,551 + -1.3 174,551 + +0.2 174,551 + +0.1 174,551 + -0.3 174,551 + -0.7 174,552 - -1.3 174,552 - +1.4 174,552 - +1.6 174,552 - +1.4 174,552 - +0.3 174,552 - +0.3 174,552 - +1.7 174,552 - -0.9 174,611 + -1.1 174,611 + -0.9 174,611 + +1.1 174,618 + -0.4 174,618 + -0.1 174,619 - +0.5 174,619 - -1.1 174,699 + +0.2 174,699 + +0.9 174,699 + +1.0 174,699 + +0.1 174,700 - +0.7 174,700 - -0.3 174,700 - -1.1 174,700 - +0.7 174,723 + -2.4 174,723 + -2.4 174,724 - -0.2 174,831 + -1.2 174,831 + -0.3 175,182 + Psyr_0160 0.49 +0.8 175,182 + Psyr_0160 0.49 +1.2 175,183 - Psyr_0160 0.50 -1.1 175,449 - Psyr_0160 0.81 -1.5 175,449 - Psyr_0160 0.81 +0.1 175,449 - Psyr_0160 0.81 -0.7 175,458 + Psyr_0160 0.82 +0.1 175,458 + Psyr_0160 0.82 -0.9 175,458 + Psyr_0160 0.82 -0.4 175,459 - Psyr_0160 0.82 +0.2 175,459 - Psyr_0160 0.82 +0.2 175,459 - Psyr_0160 0.82 -0.3 175,459 - Psyr_0160 0.82 -1.2 175,459 - Psyr_0160 0.82 -0.6 175,462 + Psyr_0160 0.82 +0.6 175,463 - Psyr_0160 0.82 +0.0 175,463 - Psyr_0160 0.82 +0.5 175,463 - Psyr_0160 0.82 -0.7 175,671 + -0.2 175,693 + -0.7 175,695 + -1.3 175,695 + +0.2 175,695 + +0.3 175,695 + +0.6 175,695 + +1.5 175,695 + -0.1 175,695 + +0.4 175,695 + -0.2 175,695 + +0.1 175,695 + +0.3 175,695 + +0.6 175,695 + -0.8 175,695 + -2.1 175,696 - -0.5 175,696 - -0.9 175,696 - +1.3 175,696 - -0.3 175,696 - +0.0 175,696 - -0.1 175,696 - +0.1 175,696 - -0.6 175,696 - -1.1 175,696 - -0.2 175,696 - -0.1 175,696 - +0.8 175,696 - +1.1 175,696 - +0.3 175,696 - -0.9 175,696 - +1.5 175,696 - +0.5 175,699 + -2.6 175,699 + -1.5 175,699 + +2.1 175,699 + +0.1 175,699 + +1.1 175,699 + -0.2 175,699 + -1.9 175,699 + -0.4 175,699 + -0.4 175,699 + -0.7 175,699 + +0.9 175,699 + +0.1 175,699 + +0.5 175,699 + +0.7 175,699 + -0.1 175,699 + +0.1 175,699 + +0.8 175,699 + +0.2 175,699 + -1.2 175,699 + +0.0 175,699 + +0.1 175,699 + +0.4 175,699 + +1.5 175,699 + +0.2 175,700 - -0.9 175,700 - +0.5 175,700 - -0.1 175,700 - +0.6 175,700 - +1.8 175,700 - -0.3 175,700 - -0.8 175,700 - -2.5 175,700 - -0.6 175,700 - -0.5 175,700 - -1.4 175,700 - -1.3 175,700 - +0.3 175,700 - -0.4 175,700 - -1.7 175,700 - -1.6 175,700 - -0.3 175,700 - +0.5 175,700 - -0.2 175,700 - +0.2 175,700 - +0.8 175,700 - -0.1 175,720 + -3.0 175,721 - +1.1 175,752 + +0.7 175,752 + -2.3 175,753 - +0.3 175,851 + +0.3 175,851 + +0.2 175,851 + -1.6 175,851 + -2.8 175,851 + +1.6 175,851 + +0.4 175,851 + -2.7 175,851 + -0.6 175,852 - +0.2 175,852 - +0.7 175,852 - +0.7 175,852 - -2.5 175,854 - -1.1 176,097 + Psyr_0161 0.26 -0.5 176,104 - Psyr_0161 0.27 -0.7 176,104 - Psyr_0161 0.27 +0.5 176,212 + Psyr_0161 0.42 +0.2 176,212 + Psyr_0161 0.42 +1.1 176,212 + Psyr_0161 0.42 +0.3 176,212 + Psyr_0161 0.42 +0.1 176,212 + Psyr_0161 0.42 +0.1 176,212 + Psyr_0161 0.42 +0.5 176,212 + Psyr_0161 0.42 +0.8 176,212 + Psyr_0161 0.42 +0.6 176,212 + Psyr_0161 0.42 -1.1 176,212 + Psyr_0161 0.42 +0.5 176,212 + Psyr_0161 0.42 -0.1 176,212 + Psyr_0161 0.42 -1.0 176,212 + Psyr_0161 0.42 +1.7 176,213 - Psyr_0161 0.42 +1.1 176,213 - Psyr_0161 0.42 +0.9 176,213 - Psyr_0161 0.42 -1.1 176,213 - Psyr_0161 0.42 +3.1 176,213 - Psyr_0161 0.42 +1.1 176,213 - Psyr_0161 0.42 +0.2 176,216 + Psyr_0161 0.42 -1.5 176,217 - Psyr_0161 0.42 -0.3 176,217 - Psyr_0161 0.42 +0.4 176,598 + -0.4 176,598 + +1.1 176,598 + -0.3 176,598 + -0.5 176,598 + -0.6 176,598 + +0.2 176,598 + +0.1 176,599 - +0.1 176,599 - +0.7 176,614 - -0.0 176,614 - -0.4
Or see this region's nucleotide sequence