Experiment: KB with Trimethoprim 125 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0088 and Psyr_0089 are separated by 750 nucleotides Psyr_0089 and Psyr_0090 are separated by 156 nucleotides
Psyr_0088: Psyr_0088 - PAS:GGDEF, at 95,185 to 96,192
_0088
Psyr_0089: Psyr_0089 - Response regulator receiver, at 96,943 to 98,331
_0089
Psyr_0090: Psyr_0090 - 4-aminobutyrate aminotransferase apoenzyme, at 98,488 to 99,768
_0090
Position (kb) 96
97
98
99 Strain fitness (log2 ratio) -2
-1
0
1
2 at 95.964 kb on - strand, within Psyr_0088 at 96.148 kb on + strand at 96.148 kb on + strand at 96.148 kb on + strand at 96.148 kb on + strand at 96.149 kb on - strand at 96.149 kb on - strand at 96.149 kb on - strand at 96.149 kb on - strand at 96.149 kb on - strand at 96.149 kb on - strand at 96.209 kb on + strand at 96.209 kb on + strand at 96.210 kb on - strand at 96.210 kb on - strand at 96.210 kb on - strand at 96.210 kb on - strand at 96.210 kb on - strand at 96.257 kb on + strand at 96.258 kb on - strand at 96.331 kb on - strand at 96.331 kb on - strand at 96.331 kb on - strand at 96.331 kb on - strand at 96.331 kb on - strand at 96.331 kb on - strand at 96.331 kb on - strand at 96.331 kb on - strand at 96.333 kb on - strand at 96.333 kb on - strand at 96.333 kb on - strand at 96.333 kb on - strand at 96.333 kb on - strand at 96.333 kb on - strand at 96.333 kb on - strand at 96.333 kb on - strand at 96.333 kb on - strand at 96.333 kb on - strand at 96.357 kb on + strand at 96.357 kb on + strand at 96.357 kb on + strand at 96.357 kb on + strand at 96.438 kb on + strand at 96.438 kb on + strand at 96.439 kb on - strand at 96.439 kb on - strand at 96.440 kb on + strand at 96.440 kb on + strand at 96.440 kb on + strand at 96.440 kb on + strand at 96.440 kb on + strand at 96.440 kb on + strand at 96.441 kb on - strand at 96.441 kb on - strand at 96.441 kb on - strand at 96.465 kb on + strand at 96.465 kb on + strand at 96.465 kb on + strand at 96.465 kb on + strand at 96.465 kb on + strand at 96.548 kb on + strand at 96.548 kb on + strand at 96.548 kb on + strand at 96.595 kb on + strand at 96.595 kb on + strand at 96.595 kb on + strand at 96.595 kb on + strand at 96.595 kb on + strand at 96.595 kb on + strand at 96.596 kb on - strand at 96.596 kb on - strand at 96.596 kb on - strand at 96.596 kb on - strand at 96.596 kb on - strand at 96.596 kb on - strand at 96.596 kb on - strand at 96.625 kb on + strand at 96.681 kb on + strand at 96.681 kb on + strand at 96.681 kb on + strand at 96.703 kb on + strand at 96.733 kb on + strand at 96.733 kb on + strand at 96.734 kb on - strand at 96.734 kb on - strand at 96.734 kb on - strand at 96.762 kb on + strand at 96.762 kb on + strand at 96.763 kb on - strand at 96.764 kb on + strand at 96.765 kb on - strand at 96.765 kb on - strand at 96.765 kb on - strand at 96.789 kb on + strand at 96.789 kb on + strand at 96.789 kb on + strand at 96.790 kb on - strand at 96.790 kb on - strand at 96.812 kb on - strand at 96.905 kb on + strand at 96.905 kb on + strand at 96.944 kb on + strand at 97.262 kb on + strand, within Psyr_0089 at 97.262 kb on + strand, within Psyr_0089 at 97.263 kb on - strand, within Psyr_0089 at 97.263 kb on - strand, within Psyr_0089 at 97.263 kb on - strand, within Psyr_0089 at 97.263 kb on - strand, within Psyr_0089 at 97.263 kb on - strand, within Psyr_0089 at 97.277 kb on + strand, within Psyr_0089 at 97.277 kb on + strand, within Psyr_0089 at 97.277 kb on + strand, within Psyr_0089 at 97.277 kb on + strand, within Psyr_0089 at 97.277 kb on + strand, within Psyr_0089 at 97.278 kb on - strand, within Psyr_0089 at 97.278 kb on - strand, within Psyr_0089 at 97.278 kb on - strand, within Psyr_0089 at 97.278 kb on - strand, within Psyr_0089 at 97.283 kb on + strand, within Psyr_0089 at 97.283 kb on + strand, within Psyr_0089 at 97.283 kb on + strand, within Psyr_0089 at 97.283 kb on + strand, within Psyr_0089 at 97.283 kb on + strand, within Psyr_0089 at 97.284 kb on - strand, within Psyr_0089 at 97.284 kb on - strand, within Psyr_0089 at 97.361 kb on + strand, within Psyr_0089 at 97.361 kb on + strand, within Psyr_0089 at 97.477 kb on - strand, within Psyr_0089 at 97.729 kb on + strand, within Psyr_0089 at 97.997 kb on + strand, within Psyr_0089 at 97.998 kb on - strand, within Psyr_0089 at 97.998 kb on - strand, within Psyr_0089 at 98.294 kb on - strand at 98.294 kb on - strand at 98.317 kb on + strand at 98.318 kb on - strand at 98.318 kb on - strand at 98.318 kb on - strand at 98.318 kb on - strand at 98.318 kb on - strand at 98.318 kb on - strand at 98.382 kb on + strand at 98.399 kb on + strand at 98.399 kb on + strand at 98.400 kb on - strand at 98.400 kb on - strand at 98.400 kb on - strand at 98.588 kb on + strand at 98.588 kb on + strand at 98.742 kb on - strand, within Psyr_0090 at 98.742 kb on - strand, within Psyr_0090 at 98.742 kb on - strand, within Psyr_0090 at 98.873 kb on + strand, within Psyr_0090 at 98.873 kb on + strand, within Psyr_0090 at 98.873 kb on + strand, within Psyr_0090 at 98.873 kb on + strand, within Psyr_0090 at 98.873 kb on + strand, within Psyr_0090 at 98.873 kb on + strand, within Psyr_0090 at 98.873 kb on + strand, within Psyr_0090 at 98.873 kb on + strand, within Psyr_0090 at 98.873 kb on + strand, within Psyr_0090 at 98.874 kb on - strand, within Psyr_0090 at 98.874 kb on - strand, within Psyr_0090 at 98.874 kb on - strand, within Psyr_0090 at 98.874 kb on - strand, within Psyr_0090 at 98.874 kb on - strand, within Psyr_0090 at 98.874 kb on - strand, within Psyr_0090 at 98.874 kb on - strand, within Psyr_0090 at 98.874 kb on - strand, within Psyr_0090 at 98.912 kb on + strand, within Psyr_0090 at 98.912 kb on + strand, within Psyr_0090 at 98.912 kb on + strand, within Psyr_0090 at 98.912 kb on + strand, within Psyr_0090 at 98.912 kb on + strand, within Psyr_0090 at 98.913 kb on - strand, within Psyr_0090 at 98.913 kb on - strand, within Psyr_0090 at 98.913 kb on - strand, within Psyr_0090 at 98.913 kb on - strand, within Psyr_0090 at 98.913 kb on - strand, within Psyr_0090 at 98.973 kb on + strand, within Psyr_0090 at 98.974 kb on - strand, within Psyr_0090 at 99.122 kb on + strand, within Psyr_0090 at 99.122 kb on + strand, within Psyr_0090 at 99.122 kb on + strand, within Psyr_0090 at 99.122 kb on + strand, within Psyr_0090 at 99.122 kb on + strand, within Psyr_0090 at 99.122 kb on + strand, within Psyr_0090 at 99.122 kb on + strand, within Psyr_0090 at 99.122 kb on + strand, within Psyr_0090 at 99.123 kb on - strand, within Psyr_0090 at 99.123 kb on - strand, within Psyr_0090 at 99.123 kb on - strand, within Psyr_0090 at 99.123 kb on - strand, within Psyr_0090 at 99.123 kb on - strand, within Psyr_0090 at 99.123 kb on - strand, within Psyr_0090 at 99.123 kb on - strand, within Psyr_0090 at 99.123 kb on - strand, within Psyr_0090 at 99.123 kb on - strand, within Psyr_0090 at 99.123 kb on - strand, within Psyr_0090 at 99.123 kb on - strand, within Psyr_0090 at 99.123 kb on - strand, within Psyr_0090 at 99.123 kb on - strand, within Psyr_0090 at 99.123 kb on - strand, within Psyr_0090 at 99.271 kb on - strand, within Psyr_0090
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Trimethoprim 125 ug/ml remove 95,964 - Psyr_0088 0.77 -0.9 96,148 + -0.7 96,148 + -1.5 96,148 + -0.6 96,148 + +0.8 96,149 - -0.9 96,149 - -0.2 96,149 - -0.8 96,149 - -0.4 96,149 - -0.4 96,149 - -0.4 96,209 + -0.3 96,209 + -0.8 96,210 - -0.7 96,210 - +0.1 96,210 - -0.6 96,210 - -0.6 96,210 - +0.4 96,257 + +0.7 96,258 - -0.1 96,331 - -0.6 96,331 - -0.5 96,331 - +1.1 96,331 - +0.7 96,331 - -1.9 96,331 - +0.1 96,331 - +0.7 96,331 - +0.4 96,333 - -0.3 96,333 - +1.4 96,333 - -0.0 96,333 - -1.8 96,333 - -1.1 96,333 - +0.4 96,333 - +0.1 96,333 - -1.0 96,333 - +0.4 96,333 - -0.5 96,357 + -0.8 96,357 + +0.6 96,357 + +0.5 96,357 + -0.9 96,438 + -0.9 96,438 + +0.4 96,439 - +0.3 96,439 - +0.8 96,440 + +0.5 96,440 + +1.7 96,440 + +0.1 96,440 + +0.5 96,440 + +0.2 96,440 + +0.7 96,441 - -0.4 96,441 - -1.5 96,441 - +1.1 96,465 + +0.1 96,465 + -0.1 96,465 + -0.5 96,465 + +0.3 96,465 + +1.0 96,548 + -0.3 96,548 + -0.3 96,548 + -0.4 96,595 + +0.1 96,595 + -0.2 96,595 + +1.1 96,595 + -0.3 96,595 + +0.1 96,595 + -0.9 96,596 - +0.2 96,596 - -2.3 96,596 - -0.2 96,596 - -0.3 96,596 - +0.4 96,596 - -0.5 96,596 - +0.3 96,625 + +0.4 96,681 + -0.8 96,681 + +0.8 96,681 + -0.6 96,703 + +0.7 96,733 + +1.8 96,733 + -1.3 96,734 - -1.0 96,734 - +0.1 96,734 - +0.2 96,762 + +0.5 96,762 + +0.6 96,763 - +0.1 96,764 + -0.1 96,765 - -0.2 96,765 - +0.4 96,765 - -0.9 96,789 + -0.4 96,789 + +0.5 96,789 + -1.1 96,790 - +0.4 96,790 - +1.1 96,812 - -1.2 96,905 + -0.6 96,905 + +0.3 96,944 + -1.2 97,262 + Psyr_0089 0.23 -0.5 97,262 + Psyr_0089 0.23 -2.4 97,263 - Psyr_0089 0.23 +1.3 97,263 - Psyr_0089 0.23 +0.3 97,263 - Psyr_0089 0.23 -0.6 97,263 - Psyr_0089 0.23 -0.0 97,263 - Psyr_0089 0.23 +0.6 97,277 + Psyr_0089 0.24 -0.3 97,277 + Psyr_0089 0.24 -1.1 97,277 + Psyr_0089 0.24 -0.9 97,277 + Psyr_0089 0.24 -0.6 97,277 + Psyr_0089 0.24 +0.3 97,278 - Psyr_0089 0.24 -0.5 97,278 - Psyr_0089 0.24 +0.8 97,278 - Psyr_0089 0.24 -1.4 97,278 - Psyr_0089 0.24 -1.3 97,283 + Psyr_0089 0.24 -0.7 97,283 + Psyr_0089 0.24 +1.1 97,283 + Psyr_0089 0.24 -1.1 97,283 + Psyr_0089 0.24 -0.3 97,283 + Psyr_0089 0.24 -0.9 97,284 - Psyr_0089 0.25 -0.2 97,284 - Psyr_0089 0.25 +0.2 97,361 + Psyr_0089 0.30 -1.4 97,361 + Psyr_0089 0.30 +2.1 97,477 - Psyr_0089 0.38 +0.7 97,729 + Psyr_0089 0.57 +0.1 97,997 + Psyr_0089 0.76 -0.9 97,998 - Psyr_0089 0.76 -0.5 97,998 - Psyr_0089 0.76 -1.5 98,294 - -1.5 98,294 - -0.2 98,317 + +0.1 98,318 - -0.3 98,318 - -0.1 98,318 - +0.1 98,318 - +0.3 98,318 - -0.2 98,318 - -0.2 98,382 + +0.3 98,399 + -0.9 98,399 + -0.5 98,400 - -2.1 98,400 - +0.2 98,400 - -0.5 98,588 + -0.9 98,588 + -0.0 98,742 - Psyr_0090 0.20 -0.4 98,742 - Psyr_0090 0.20 +0.1 98,742 - Psyr_0090 0.20 +0.8 98,873 + Psyr_0090 0.30 -0.3 98,873 + Psyr_0090 0.30 -0.3 98,873 + Psyr_0090 0.30 -1.7 98,873 + Psyr_0090 0.30 +2.4 98,873 + Psyr_0090 0.30 +1.0 98,873 + Psyr_0090 0.30 +0.1 98,873 + Psyr_0090 0.30 +0.6 98,873 + Psyr_0090 0.30 -0.8 98,873 + Psyr_0090 0.30 -0.8 98,874 - Psyr_0090 0.30 -0.8 98,874 - Psyr_0090 0.30 +0.3 98,874 - Psyr_0090 0.30 +0.5 98,874 - Psyr_0090 0.30 +0.3 98,874 - Psyr_0090 0.30 -0.2 98,874 - Psyr_0090 0.30 -0.6 98,874 - Psyr_0090 0.30 -1.1 98,874 - Psyr_0090 0.30 +1.1 98,912 + Psyr_0090 0.33 +0.1 98,912 + Psyr_0090 0.33 +0.4 98,912 + Psyr_0090 0.33 +1.1 98,912 + Psyr_0090 0.33 -0.1 98,912 + Psyr_0090 0.33 +0.7 98,913 - Psyr_0090 0.33 +0.2 98,913 - Psyr_0090 0.33 +0.7 98,913 - Psyr_0090 0.33 -0.6 98,913 - Psyr_0090 0.33 +2.7 98,913 - Psyr_0090 0.33 +0.5 98,973 + Psyr_0090 0.38 +0.5 98,974 - Psyr_0090 0.38 +1.7 99,122 + Psyr_0090 0.49 +0.6 99,122 + Psyr_0090 0.49 -1.2 99,122 + Psyr_0090 0.49 +0.2 99,122 + Psyr_0090 0.49 +0.2 99,122 + Psyr_0090 0.49 -0.7 99,122 + Psyr_0090 0.49 +1.0 99,122 + Psyr_0090 0.49 -0.2 99,122 + Psyr_0090 0.49 +0.3 99,123 - Psyr_0090 0.50 -0.2 99,123 - Psyr_0090 0.50 -0.3 99,123 - Psyr_0090 0.50 +0.7 99,123 - Psyr_0090 0.50 -1.9 99,123 - Psyr_0090 0.50 +0.2 99,123 - Psyr_0090 0.50 +0.4 99,123 - Psyr_0090 0.50 -0.5 99,123 - Psyr_0090 0.50 +0.8 99,123 - Psyr_0090 0.50 -0.7 99,123 - Psyr_0090 0.50 +0.7 99,123 - Psyr_0090 0.50 +0.4 99,123 - Psyr_0090 0.50 -0.2 99,123 - Psyr_0090 0.50 +0.5 99,123 - Psyr_0090 0.50 -1.2 99,271 - Psyr_0090 0.61 -0.1
Or see this region's nucleotide sequence