Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5493

Experiment: copper (II) chloride 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_5490 and Pf1N1B4_5491 are separated by 335 nucleotidesPf1N1B4_5491 and Pf1N1B4_5492 are separated by 34 nucleotidesPf1N1B4_5492 and Pf1N1B4_5493 are separated by 91 nucleotidesPf1N1B4_5493 and Pf1N1B4_5494 are separated by 96 nucleotides Pf1N1B4_5490 - hypothetical protein, at 237,805 to 238,038 _5490 Pf1N1B4_5491 - hypothetical protein, at 238,374 to 238,607 _5491 Pf1N1B4_5492 - hypothetical protein, at 238,642 to 238,875 _5492 Pf1N1B4_5493 - hypothetical protein, at 238,967 to 239,542 _5493 Pf1N1B4_5494 - Helicase IV (EC 3.6.1.-), at 239,639 to 242,071 _5494 Position (kb) 238 239 240Strain fitness (log2 ratio) -2 -1 0 1 2at 238.020 kb on + strandat 238.020 kb on + strandat 238.020 kb on + strandat 238.020 kb on + strandat 238.020 kb on + strandat 238.021 kb on - strandat 238.036 kb on + strandat 238.036 kb on + strandat 238.036 kb on + strandat 238.036 kb on + strandat 238.036 kb on + strandat 238.074 kb on + strandat 238.074 kb on + strandat 238.074 kb on + strandat 238.075 kb on - strandat 238.075 kb on - strandat 238.075 kb on - strandat 238.105 kb on + strandat 238.171 kb on + strandat 238.234 kb on + strandat 238.281 kb on + strandat 238.281 kb on + strandat 238.281 kb on + strandat 238.281 kb on + strandat 238.282 kb on - strandat 238.282 kb on - strandat 238.282 kb on - strandat 238.332 kb on + strandat 238.332 kb on + strandat 238.333 kb on - strandat 238.333 kb on - strandat 238.346 kb on + strandat 238.618 kb on + strandat 238.619 kb on - strandat 238.619 kb on - strandat 238.828 kb on + strand, within Pf1N1B4_5492at 238.828 kb on + strand, within Pf1N1B4_5492at 238.828 kb on + strand, within Pf1N1B4_5492at 238.829 kb on - strandat 238.832 kb on + strand, within Pf1N1B4_5492at 238.832 kb on + strand, within Pf1N1B4_5492at 238.832 kb on + strand, within Pf1N1B4_5492at 238.832 kb on + strandat 238.833 kb on - strand, within Pf1N1B4_5492at 238.833 kb on - strand, within Pf1N1B4_5492at 238.833 kb on - strandat 238.833 kb on - strand, within Pf1N1B4_5492at 238.833 kb on - strand, within Pf1N1B4_5492at 238.833 kb on - strand, within Pf1N1B4_5492at 238.932 kb on + strandat 238.932 kb on + strandat 238.932 kb on + strandat 238.950 kb on + strandat 238.950 kb on + strandat 238.950 kb on + strandat 238.950 kb on + strandat 238.951 kb on - strandat 238.951 kb on - strandat 238.951 kb on - strandat 239.040 kb on + strand, within Pf1N1B4_5493at 239.040 kb on + strand, within Pf1N1B4_5493at 239.040 kb on + strand, within Pf1N1B4_5493at 239.041 kb on - strand, within Pf1N1B4_5493at 239.072 kb on + strand, within Pf1N1B4_5493at 239.073 kb on - strand, within Pf1N1B4_5493at 239.082 kb on + strand, within Pf1N1B4_5493at 239.168 kb on - strand, within Pf1N1B4_5493at 239.223 kb on - strand, within Pf1N1B4_5493at 239.223 kb on - strand, within Pf1N1B4_5493at 239.273 kb on + strand, within Pf1N1B4_5493at 239.273 kb on + strand, within Pf1N1B4_5493at 239.274 kb on - strand, within Pf1N1B4_5493at 239.274 kb on - strand, within Pf1N1B4_5493at 239.274 kb on - strand, within Pf1N1B4_5493at 239.274 kb on - strand, within Pf1N1B4_5493at 239.274 kb on - strand, within Pf1N1B4_5493at 239.274 kb on - strand, within Pf1N1B4_5493at 239.352 kb on - strand, within Pf1N1B4_5493at 239.435 kb on + strand, within Pf1N1B4_5493at 239.436 kb on - strand, within Pf1N1B4_5493at 239.436 kb on - strand, within Pf1N1B4_5493at 239.436 kb on - strand, within Pf1N1B4_5493at 239.436 kb on - strand, within Pf1N1B4_5493at 239.533 kb on + strandat 239.739 kb on + strandat 239.740 kb on - strandat 239.761 kb on + strandat 239.761 kb on + strandat 239.761 kb on + strandat 239.761 kb on + strandat 239.762 kb on - strandat 239.762 kb on - strandat 239.762 kb on - strandat 239.762 kb on - strandat 239.822 kb on - strandat 239.866 kb on + strandat 239.867 kb on - strandat 239.867 kb on - strandat 239.867 kb on - strandat 239.890 kb on + strandat 240.117 kb on + strand, within Pf1N1B4_5494at 240.297 kb on + strand, within Pf1N1B4_5494at 240.298 kb on - strand, within Pf1N1B4_5494at 240.349 kb on - strandat 240.488 kb on + strand, within Pf1N1B4_5494at 240.488 kb on + strand, within Pf1N1B4_5494at 240.488 kb on + strand, within Pf1N1B4_5494at 240.489 kb on - strand, within Pf1N1B4_5494at 240.489 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 2.5 mM
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238,020 + -2.4
238,020 + +0.1
238,020 + +0.5
238,020 + +1.1
238,020 + +2.3
238,021 - +0.8
238,036 + +0.5
238,036 + -1.8
238,036 + -0.3
238,036 + -1.1
238,036 + +0.1
238,074 + -0.2
238,074 + -0.8
238,074 + +1.1
238,075 - -0.7
238,075 - -0.3
238,075 - -2.3
238,105 + +2.1
238,171 + +0.8
238,234 + -0.5
238,281 + -0.7
238,281 + -0.8
238,281 + +0.5
238,281 + -0.1
238,282 - -0.1
238,282 - -0.9
238,282 - -1.2
238,332 + -0.4
238,332 + -1.1
238,333 - +0.6
238,333 - -0.5
238,346 + -0.8
238,618 + +1.2
238,619 - -0.7
238,619 - -0.8
238,828 + Pf1N1B4_5492 0.79 +1.5
238,828 + Pf1N1B4_5492 0.79 +0.2
238,828 + Pf1N1B4_5492 0.79 -1.7
238,829 - -0.1
238,832 + Pf1N1B4_5492 0.81 +0.4
238,832 + Pf1N1B4_5492 0.81 +0.8
238,832 + Pf1N1B4_5492 0.81 -0.1
238,832 + +1.9
238,833 - Pf1N1B4_5492 0.82 +1.0
238,833 - Pf1N1B4_5492 0.82 -0.4
238,833 - +2.1
238,833 - Pf1N1B4_5492 0.82 -0.5
238,833 - Pf1N1B4_5492 0.82 +0.2
238,833 - Pf1N1B4_5492 0.82 +0.0
238,932 + -0.3
238,932 + +0.4
238,932 + +2.3
238,950 + -1.2
238,950 + +1.7
238,950 + -1.3
238,950 + +0.4
238,951 - -0.2
238,951 - -0.1
238,951 - +0.2
239,040 + Pf1N1B4_5493 0.13 +0.9
239,040 + Pf1N1B4_5493 0.13 -0.9
239,040 + Pf1N1B4_5493 0.13 -0.5
239,041 - Pf1N1B4_5493 0.13 -0.8
239,072 + Pf1N1B4_5493 0.18 -0.3
239,073 - Pf1N1B4_5493 0.18 +0.9
239,082 + Pf1N1B4_5493 0.20 +0.1
239,168 - Pf1N1B4_5493 0.35 -2.2
239,223 - Pf1N1B4_5493 0.44 -0.8
239,223 - Pf1N1B4_5493 0.44 +0.1
239,273 + Pf1N1B4_5493 0.53 -0.1
239,273 + Pf1N1B4_5493 0.53 -0.8
239,274 - Pf1N1B4_5493 0.53 -0.7
239,274 - Pf1N1B4_5493 0.53 -0.7
239,274 - Pf1N1B4_5493 0.53 -0.1
239,274 - Pf1N1B4_5493 0.53 -0.3
239,274 - Pf1N1B4_5493 0.53 -1.1
239,274 - Pf1N1B4_5493 0.53 -1.3
239,352 - Pf1N1B4_5493 0.67 -1.1
239,435 + Pf1N1B4_5493 0.81 -1.5
239,436 - Pf1N1B4_5493 0.81 -1.3
239,436 - Pf1N1B4_5493 0.81 +0.1
239,436 - Pf1N1B4_5493 0.81 -0.9
239,436 - Pf1N1B4_5493 0.81 -2.4
239,533 + -0.5
239,739 + +0.9
239,740 - -0.9
239,761 + +0.1
239,761 + +0.2
239,761 + -0.7
239,761 + +1.2
239,762 - -0.5
239,762 - -1.1
239,762 - -0.1
239,762 - +0.3
239,822 - +0.0
239,866 + -0.2
239,867 - -0.1
239,867 - +0.3
239,867 - +1.9
239,890 + -0.8
240,117 + Pf1N1B4_5494 0.20 +0.7
240,297 + Pf1N1B4_5494 0.27 -0.1
240,298 - Pf1N1B4_5494 0.27 -1.3
240,349 - +0.5
240,488 + Pf1N1B4_5494 0.35 +1.0
240,488 + Pf1N1B4_5494 0.35 +0.8
240,488 + Pf1N1B4_5494 0.35 -0.3
240,489 - Pf1N1B4_5494 0.35 +0.8
240,489 - -0.1

Or see this region's nucleotide sequence