Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5329

Experiment: copper (II) chloride 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_5327 and Pf1N1B4_5328 are separated by 39 nucleotidesPf1N1B4_5328 and Pf1N1B4_5329 are separated by 219 nucleotidesPf1N1B4_5329 and Pf1N1B4_5330 are separated by 25 nucleotidesPf1N1B4_5330 and Pf1N1B4_5331 are separated by 356 nucleotidesPf1N1B4_5331 and Pf1N1B4_5332 are separated by 2 nucleotides Pf1N1B4_5327 - hypothetical protein, at 76,415 to 76,909 _5327 Pf1N1B4_5328 - hypothetical protein, at 76,949 to 77,134 _5328 Pf1N1B4_5329 - hypothetical protein, at 77,354 to 77,896 _5329 Pf1N1B4_5330 - hypothetical protein, at 77,922 to 78,233 _5330 Pf1N1B4_5331 - hypothetical protein, at 78,590 to 78,760 _5331 Pf1N1B4_5332 - hypothetical protein, at 78,763 to 78,957 _5332 Position (kb) 77 78Strain fitness (log2 ratio) -2 -1 0 1 2at 76.427 kb on - strandat 76.427 kb on - strandat 76.427 kb on - strandat 76.560 kb on + strand, within Pf1N1B4_5327at 76.561 kb on - strand, within Pf1N1B4_5327at 76.561 kb on - strand, within Pf1N1B4_5327at 76.561 kb on - strand, within Pf1N1B4_5327at 76.648 kb on - strand, within Pf1N1B4_5327at 76.732 kb on - strand, within Pf1N1B4_5327at 76.732 kb on - strand, within Pf1N1B4_5327at 76.782 kb on + strand, within Pf1N1B4_5327at 76.782 kb on + strand, within Pf1N1B4_5327at 76.782 kb on + strand, within Pf1N1B4_5327at 76.782 kb on + strand, within Pf1N1B4_5327at 76.782 kb on + strand, within Pf1N1B4_5327at 76.782 kb on + strand, within Pf1N1B4_5327at 76.782 kb on + strand, within Pf1N1B4_5327at 76.782 kb on + strand, within Pf1N1B4_5327at 76.782 kb on + strand, within Pf1N1B4_5327at 76.782 kb on + strand, within Pf1N1B4_5327at 76.782 kb on + strand, within Pf1N1B4_5327at 76.782 kb on + strand, within Pf1N1B4_5327at 76.783 kb on - strand, within Pf1N1B4_5327at 76.783 kb on - strand, within Pf1N1B4_5327at 76.783 kb on - strand, within Pf1N1B4_5327at 76.783 kb on - strand, within Pf1N1B4_5327at 76.783 kb on - strand, within Pf1N1B4_5327at 76.783 kb on - strand, within Pf1N1B4_5327at 76.783 kb on - strand, within Pf1N1B4_5327at 76.783 kb on - strand, within Pf1N1B4_5327at 76.783 kb on - strand, within Pf1N1B4_5327at 76.830 kb on + strand, within Pf1N1B4_5327at 76.830 kb on + strand, within Pf1N1B4_5327at 76.830 kb on + strand, within Pf1N1B4_5327at 76.830 kb on + strand, within Pf1N1B4_5327at 76.831 kb on - strand, within Pf1N1B4_5327at 76.876 kb on + strandat 76.877 kb on - strandat 76.946 kb on - strandat 76.950 kb on + strandat 76.950 kb on + strandat 76.950 kb on + strandat 76.951 kb on - strandat 76.951 kb on - strandat 76.954 kb on + strandat 76.954 kb on + strandat 76.955 kb on - strandat 76.955 kb on - strandat 77.161 kb on - strandat 77.161 kb on - strandat 77.161 kb on - strandat 77.161 kb on - strandat 77.204 kb on - strandat 77.249 kb on + strandat 77.249 kb on + strandat 77.254 kb on + strandat 77.255 kb on - strandat 77.255 kb on - strandat 77.336 kb on + strandat 77.336 kb on + strandat 77.337 kb on - strandat 77.362 kb on + strandat 77.371 kb on + strandat 77.410 kb on + strand, within Pf1N1B4_5329at 77.410 kb on + strand, within Pf1N1B4_5329at 77.410 kb on + strand, within Pf1N1B4_5329at 77.410 kb on + strand, within Pf1N1B4_5329at 77.411 kb on - strand, within Pf1N1B4_5329at 77.686 kb on + strand, within Pf1N1B4_5329at 77.752 kb on - strand, within Pf1N1B4_5329at 77.781 kb on + strand, within Pf1N1B4_5329at 77.781 kb on + strandat 77.782 kb on - strand, within Pf1N1B4_5329at 77.847 kb on + strandat 77.923 kb on + strandat 77.923 kb on + strandat 77.980 kb on + strand, within Pf1N1B4_5330at 78.022 kb on - strand, within Pf1N1B4_5330at 78.152 kb on + strandat 78.152 kb on + strand, within Pf1N1B4_5330at 78.153 kb on - strandat 78.313 kb on + strandat 78.313 kb on + strandat 78.313 kb on + strandat 78.313 kb on + strandat 78.314 kb on - strandat 78.336 kb on + strandat 78.336 kb on + strandat 78.336 kb on + strandat 78.336 kb on + strandat 78.351 kb on + strandat 78.351 kb on + strandat 78.351 kb on + strandat 78.352 kb on - strandat 78.352 kb on - strandat 78.392 kb on + strandat 78.392 kb on + strandat 78.425 kb on + strandat 78.425 kb on + strandat 78.426 kb on - strandat 78.426 kb on - strandat 78.474 kb on + strandat 78.474 kb on + strandat 78.475 kb on - strandat 78.475 kb on - strandat 78.475 kb on - strandat 78.475 kb on - strandat 78.475 kb on - strandat 78.597 kb on - strandat 78.597 kb on - strandat 78.597 kb on - strandat 78.729 kb on + strand, within Pf1N1B4_5331at 78.730 kb on - strand, within Pf1N1B4_5331at 78.730 kb on - strand, within Pf1N1B4_5331at 78.730 kb on - strand, within Pf1N1B4_5331at 78.739 kb on - strand, within Pf1N1B4_5331

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 2.5 mM
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76,427 - -0.2
76,427 - -2.7
76,427 - +0.8
76,560 + Pf1N1B4_5327 0.29 -1.8
76,561 - Pf1N1B4_5327 0.29 +1.3
76,561 - Pf1N1B4_5327 0.29 -0.3
76,561 - Pf1N1B4_5327 0.29 -0.5
76,648 - Pf1N1B4_5327 0.47 -0.5
76,732 - Pf1N1B4_5327 0.64 -0.1
76,732 - Pf1N1B4_5327 0.64 -1.1
76,782 + Pf1N1B4_5327 0.74 +0.8
76,782 + Pf1N1B4_5327 0.74 +0.5
76,782 + Pf1N1B4_5327 0.74 +0.5
76,782 + Pf1N1B4_5327 0.74 +0.5
76,782 + Pf1N1B4_5327 0.74 +2.0
76,782 + Pf1N1B4_5327 0.74 -0.2
76,782 + Pf1N1B4_5327 0.74 -0.5
76,782 + Pf1N1B4_5327 0.74 +0.1
76,782 + Pf1N1B4_5327 0.74 -0.1
76,782 + Pf1N1B4_5327 0.74 -0.5
76,782 + Pf1N1B4_5327 0.74 +0.1
76,782 + Pf1N1B4_5327 0.74 +0.2
76,783 - Pf1N1B4_5327 0.74 +0.5
76,783 - Pf1N1B4_5327 0.74 -0.1
76,783 - Pf1N1B4_5327 0.74 -2.4
76,783 - Pf1N1B4_5327 0.74 -0.1
76,783 - Pf1N1B4_5327 0.74 +0.1
76,783 - Pf1N1B4_5327 0.74 +1.0
76,783 - Pf1N1B4_5327 0.74 -0.8
76,783 - Pf1N1B4_5327 0.74 +0.2
76,783 - Pf1N1B4_5327 0.74 -1.5
76,830 + Pf1N1B4_5327 0.84 +0.0
76,830 + Pf1N1B4_5327 0.84 -1.2
76,830 + Pf1N1B4_5327 0.84 -1.1
76,830 + Pf1N1B4_5327 0.84 -0.1
76,831 - Pf1N1B4_5327 0.84 -0.8
76,876 + -0.4
76,877 - +2.1
76,946 - -0.6
76,950 + -1.9
76,950 + +0.8
76,950 + +0.5
76,951 - -0.3
76,951 - +0.5
76,954 + -0.5
76,954 + +0.1
76,955 - +1.2
76,955 - +0.2
77,161 - -1.5
77,161 - +0.2
77,161 - -0.4
77,161 - -0.9
77,204 - +0.7
77,249 + +1.5
77,249 + +1.5
77,254 + +0.5
77,255 - +0.3
77,255 - +0.5
77,336 + +0.5
77,336 + -1.1
77,337 - -0.5
77,362 + -0.2
77,371 + -0.4
77,410 + Pf1N1B4_5329 0.10 -1.1
77,410 + Pf1N1B4_5329 0.10 +1.2
77,410 + Pf1N1B4_5329 0.10 -0.9
77,410 + Pf1N1B4_5329 0.10 -0.4
77,411 - Pf1N1B4_5329 0.10 -2.7
77,686 + Pf1N1B4_5329 0.61 -0.4
77,752 - Pf1N1B4_5329 0.73 -2.3
77,781 + Pf1N1B4_5329 0.79 -0.3
77,781 + +2.5
77,782 - Pf1N1B4_5329 0.79 -1.1
77,847 + +0.9
77,923 + -0.1
77,923 + +0.1
77,980 + Pf1N1B4_5330 0.19 +0.0
78,022 - Pf1N1B4_5330 0.32 -0.8
78,152 + +1.5
78,152 + Pf1N1B4_5330 0.74 -0.3
78,153 - +0.5
78,313 + -0.1
78,313 + -0.7
78,313 + -0.1
78,313 + -0.1
78,314 - +1.1
78,336 + -0.8
78,336 + +0.8
78,336 + -2.5
78,336 + +0.5
78,351 + +1.2
78,351 + +1.3
78,351 + -0.8
78,352 - -0.5
78,352 - -1.3
78,392 + +0.2
78,392 + +0.1
78,425 + +0.5
78,425 + +0.5
78,426 - +1.3
78,426 - -0.1
78,474 + -1.5
78,474 + -0.5
78,475 - +0.2
78,475 - +1.4
78,475 - +0.5
78,475 - +1.2
78,475 - -1.1
78,597 - -0.7
78,597 - -0.9
78,597 - +0.4
78,729 + Pf1N1B4_5331 0.81 +0.1
78,730 - Pf1N1B4_5331 0.82 -0.3
78,730 - Pf1N1B4_5331 0.82 +1.5
78,730 - Pf1N1B4_5331 0.82 +1.8
78,739 - Pf1N1B4_5331 0.87 +0.9

Or see this region's nucleotide sequence