Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5051

Experiment: copper (II) chloride 2.5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf1N1B4_5048 and Pf1N1B4_5049 are separated by 127 nucleotidesPf1N1B4_5049 and Pf1N1B4_5050 are separated by 12 nucleotidesPf1N1B4_5050 and Pf1N1B4_5051 are separated by 44 nucleotidesPf1N1B4_5051 and Pf1N1B4_5052 overlap by 4 nucleotidesPf1N1B4_5052 and Pf1N1B4_5053 overlap by 4 nucleotides Pf1N1B4_5048 - Methylenetetrahydrofolate dehydrogenase (NADP+) (EC 1.5.1.5) / Methenyltetrahydrofolate cyclohydrolase (EC 3.5.4.9), at 5,592,754 to 5,593,680 _5048 Pf1N1B4_5049 - FIG00959942: hypothetical protein, at 5,593,808 to 5,594,326 _5049 Pf1N1B4_5050 - hypothetical protein, at 5,594,339 to 5,594,452 _5050 Pf1N1B4_5051 - Sensor protein DegS, at 5,594,497 to 5,595,681 _5051 Pf1N1B4_5052 - Two-component response regulator, at 5,595,678 to 5,596,331 _5052 Pf1N1B4_5053 - Sensory box histidine kinase/response regulator, at 5,596,328 to 5,598,655 _5053 Position (kb) 5594 5595 5596Strain fitness (log2 ratio) -2 -1 0 1at 5593.517 kb on - strandat 5593.588 kb on + strandat 5593.905 kb on + strand, within Pf1N1B4_5049at 5594.055 kb on + strand, within Pf1N1B4_5049at 5594.056 kb on - strand, within Pf1N1B4_5049at 5594.056 kb on - strand, within Pf1N1B4_5049at 5594.248 kb on - strand, within Pf1N1B4_5049at 5594.248 kb on - strand, within Pf1N1B4_5049at 5594.248 kb on - strand, within Pf1N1B4_5049at 5594.248 kb on - strand, within Pf1N1B4_5049at 5594.248 kb on - strandat 5594.248 kb on - strand, within Pf1N1B4_5049at 5594.450 kb on + strandat 5594.451 kb on - strandat 5594.490 kb on + strandat 5594.753 kb on + strand, within Pf1N1B4_5051at 5594.754 kb on - strand, within Pf1N1B4_5051at 5594.886 kb on - strand, within Pf1N1B4_5051at 5595.186 kb on - strand, within Pf1N1B4_5051at 5595.650 kb on + strandat 5595.651 kb on - strandat 5595.651 kb on - strandat 5595.691 kb on + strandat 5596.368 kb on + strandat 5596.407 kb on + strandat 5596.436 kb on + strandat 5596.436 kb on + strandat 5596.476 kb on + strandat 5596.476 kb on + strandat 5596.476 kb on + strandat 5596.477 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 2.5 mM
remove
5,593,517 - +0.3
5,593,588 + +0.4
5,593,905 + Pf1N1B4_5049 0.19 -0.6
5,594,055 + Pf1N1B4_5049 0.48 +0.2
5,594,056 - Pf1N1B4_5049 0.48 +0.7
5,594,056 - Pf1N1B4_5049 0.48 -1.3
5,594,248 - Pf1N1B4_5049 0.85 +0.7
5,594,248 - Pf1N1B4_5049 0.85 -0.7
5,594,248 - Pf1N1B4_5049 0.85 -2.5
5,594,248 - Pf1N1B4_5049 0.85 -0.2
5,594,248 - +0.7
5,594,248 - Pf1N1B4_5049 0.85 -1.2
5,594,450 + -0.1
5,594,451 - -0.2
5,594,490 + -0.8
5,594,753 + Pf1N1B4_5051 0.22 -0.0
5,594,754 - Pf1N1B4_5051 0.22 -1.8
5,594,886 - Pf1N1B4_5051 0.33 -0.3
5,595,186 - Pf1N1B4_5051 0.58 +0.0
5,595,650 + -2.5
5,595,651 - +0.7
5,595,651 - +0.4
5,595,691 + +0.1
5,596,368 + -1.1
5,596,407 + +0.1
5,596,436 + -0.0
5,596,436 + +0.7
5,596,476 + -2.3
5,596,476 + +0.7
5,596,476 + -0.0
5,596,477 - +0.4

Or see this region's nucleotide sequence