Experiment: copper (II) chloride 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5003 and Pf1N1B4_5004 are separated by 246 nucleotides Pf1N1B4_5004 and Pf1N1B4_5005 are separated by 285 nucleotides
Pf1N1B4_5003 - 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27), at 5,553,379 to 5,554,455
_5003
Pf1N1B4_5004 - Permease of the drug/metabolite transporter (DMT) superfamily, at 5,554,702 to 5,555,649
_5004
Pf1N1B4_5005 - LysR family transcriptional regulator STM2281, at 5,555,935 to 5,556,807
_5005
Position (kb) 5554
5555
5556 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5553.867 kb on - strand, within Pf1N1B4_5003 at 5553.921 kb on - strand, within Pf1N1B4_5003 at 5553.936 kb on - strand, within Pf1N1B4_5003 at 5554.043 kb on + strand, within Pf1N1B4_5003 at 5554.043 kb on + strand, within Pf1N1B4_5003 at 5554.043 kb on + strand, within Pf1N1B4_5003 at 5554.043 kb on + strand, within Pf1N1B4_5003 at 5554.079 kb on + strand, within Pf1N1B4_5003 at 5554.079 kb on + strand, within Pf1N1B4_5003 at 5554.080 kb on - strand, within Pf1N1B4_5003 at 5554.181 kb on + strand, within Pf1N1B4_5003 at 5554.570 kb on - strand at 5554.570 kb on - strand at 5554.654 kb on - strand at 5554.654 kb on - strand at 5554.654 kb on - strand at 5554.656 kb on - strand at 5554.901 kb on + strand, within Pf1N1B4_5004 at 5554.913 kb on + strand, within Pf1N1B4_5004 at 5554.913 kb on + strand, within Pf1N1B4_5004 at 5554.913 kb on + strand at 5554.914 kb on - strand, within Pf1N1B4_5004 at 5554.914 kb on - strand, within Pf1N1B4_5004 at 5554.914 kb on - strand, within Pf1N1B4_5004 at 5554.914 kb on - strand at 5555.112 kb on - strand, within Pf1N1B4_5004 at 5555.348 kb on + strand at 5555.348 kb on + strand, within Pf1N1B4_5004 at 5555.348 kb on + strand at 5555.349 kb on - strand, within Pf1N1B4_5004 at 5555.349 kb on - strand, within Pf1N1B4_5004 at 5555.349 kb on - strand at 5555.360 kb on + strand, within Pf1N1B4_5004 at 5555.378 kb on + strand, within Pf1N1B4_5004 at 5555.379 kb on - strand, within Pf1N1B4_5004 at 5555.379 kb on - strand, within Pf1N1B4_5004 at 5555.639 kb on + strand at 5555.640 kb on - strand at 5555.643 kb on + strand at 5555.643 kb on + strand at 5555.643 kb on + strand at 5555.644 kb on - strand at 5556.068 kb on + strand at 5556.068 kb on + strand, within Pf1N1B4_5005 at 5556.129 kb on - strand, within Pf1N1B4_5005 at 5556.358 kb on - strand, within Pf1N1B4_5005 at 5556.488 kb on + strand at 5556.507 kb on - strand at 5556.549 kb on + strand, within Pf1N1B4_5005 at 5556.549 kb on + strand, within Pf1N1B4_5005
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 2.5 mM remove 5,553,867 - Pf1N1B4_5003 0.45 +0.4 5,553,921 - Pf1N1B4_5003 0.50 -2.6 5,553,936 - Pf1N1B4_5003 0.52 -2.1 5,554,043 + Pf1N1B4_5003 0.62 -0.3 5,554,043 + Pf1N1B4_5003 0.62 +0.1 5,554,043 + Pf1N1B4_5003 0.62 -0.5 5,554,043 + Pf1N1B4_5003 0.62 -0.6 5,554,079 + Pf1N1B4_5003 0.65 -0.6 5,554,079 + Pf1N1B4_5003 0.65 -0.3 5,554,080 - Pf1N1B4_5003 0.65 -1.9 5,554,181 + Pf1N1B4_5003 0.74 -1.6 5,554,570 - -1.0 5,554,570 - -2.1 5,554,654 - +0.1 5,554,654 - -1.5 5,554,654 - -1.1 5,554,656 - -0.9 5,554,901 + Pf1N1B4_5004 0.21 -1.1 5,554,913 + Pf1N1B4_5004 0.22 -0.6 5,554,913 + Pf1N1B4_5004 0.22 -0.7 5,554,913 + +0.7 5,554,914 - Pf1N1B4_5004 0.22 -2.1 5,554,914 - Pf1N1B4_5004 0.22 -0.3 5,554,914 - Pf1N1B4_5004 0.22 -0.6 5,554,914 - -0.3 5,555,112 - Pf1N1B4_5004 0.43 -0.0 5,555,348 + -0.3 5,555,348 + Pf1N1B4_5004 0.68 -2.1 5,555,348 + -0.3 5,555,349 - Pf1N1B4_5004 0.68 +1.0 5,555,349 - Pf1N1B4_5004 0.68 -1.6 5,555,349 - +1.7 5,555,360 + Pf1N1B4_5004 0.69 +0.1 5,555,378 + Pf1N1B4_5004 0.71 -1.7 5,555,379 - Pf1N1B4_5004 0.71 -1.6 5,555,379 - Pf1N1B4_5004 0.71 -2.7 5,555,639 + +0.5 5,555,640 - +0.7 5,555,643 + -0.7 5,555,643 + -0.0 5,555,643 + +0.1 5,555,644 - -1.7 5,556,068 + -1.6 5,556,068 + Pf1N1B4_5005 0.15 -0.8 5,556,129 - Pf1N1B4_5005 0.22 -0.0 5,556,358 - Pf1N1B4_5005 0.48 -0.3 5,556,488 + +2.3 5,556,507 - -0.3 5,556,549 + Pf1N1B4_5005 0.70 -1.8 5,556,549 + Pf1N1B4_5005 0.70 -0.0
Or see this region's nucleotide sequence