Experiment: copper (II) chloride 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4850 and Pf1N1B4_4851 are separated by 338 nucleotides Pf1N1B4_4851 and Pf1N1B4_4852 overlap by 12 nucleotides
Pf1N1B4_4850 - Various polyols ABC transporter, periplasmic substrate-binding protein, at 5,358,900 to 5,360,222
_4850
Pf1N1B4_4851 - Transcriptional regulator of various polyols utilization, AraC family, at 5,360,561 to 5,361,424
_4851
Pf1N1B4_4852 - hypothetical protein, at 5,361,413 to 5,361,595
_4852
Position (kb)
5360
5361
5362 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 5359.838 kb on - strand, within Pf1N1B4_4850 at 5359.898 kb on - strand, within Pf1N1B4_4850 at 5359.960 kb on + strand, within Pf1N1B4_4850 at 5360.000 kb on + strand, within Pf1N1B4_4850 at 5360.000 kb on + strand, within Pf1N1B4_4850 at 5360.266 kb on - strand at 5360.308 kb on + strand at 5360.308 kb on + strand at 5360.432 kb on + strand at 5360.432 kb on + strand at 5360.504 kb on + strand at 5360.504 kb on + strand at 5360.504 kb on + strand at 5360.504 kb on + strand at 5360.504 kb on + strand at 5360.504 kb on + strand at 5360.505 kb on - strand at 5360.505 kb on - strand at 5360.505 kb on - strand at 5360.505 kb on - strand at 5360.506 kb on + strand at 5360.506 kb on + strand at 5360.506 kb on + strand at 5360.506 kb on + strand at 5360.506 kb on + strand at 5360.506 kb on + strand at 5360.506 kb on + strand at 5360.506 kb on + strand at 5360.506 kb on + strand at 5360.506 kb on + strand at 5360.507 kb on - strand at 5360.508 kb on + strand at 5360.555 kb on + strand at 5360.559 kb on + strand at 5360.560 kb on - strand at 5360.560 kb on - strand at 5360.663 kb on - strand, within Pf1N1B4_4851 at 5360.663 kb on - strand, within Pf1N1B4_4851 at 5360.663 kb on - strand, within Pf1N1B4_4851 at 5360.877 kb on + strand, within Pf1N1B4_4851 at 5360.955 kb on + strand, within Pf1N1B4_4851 at 5361.289 kb on - strand, within Pf1N1B4_4851 at 5361.339 kb on + strand at 5361.339 kb on + strand at 5361.394 kb on - strand at 5361.481 kb on - strand, within Pf1N1B4_4852 at 5361.481 kb on - strand, within Pf1N1B4_4852 at 5361.481 kb on - strand, within Pf1N1B4_4852 at 5361.577 kb on - strand at 5361.577 kb on - strand at 5361.593 kb on + strand at 5361.594 kb on - strand at 5361.594 kb on - strand at 5361.609 kb on + strand at 5361.628 kb on - strand at 5361.694 kb on - strand at 5362.310 kb on + strand at 5362.403 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 2.5 mM remove 5,359,838 - Pf1N1B4_4850 0.71 -0.1 5,359,898 - Pf1N1B4_4850 0.75 -1.0 5,359,960 + Pf1N1B4_4850 0.80 +0.1 5,360,000 + Pf1N1B4_4850 0.83 +0.8 5,360,000 + Pf1N1B4_4850 0.83 +0.4 5,360,266 - -0.4 5,360,308 + +0.2 5,360,308 + +1.8 5,360,432 + -0.5 5,360,432 + -3.1 5,360,504 + +3.3 5,360,504 + +0.2 5,360,504 + +1.5 5,360,504 + +0.8 5,360,504 + +2.2 5,360,504 + -1.1 5,360,505 - -0.4 5,360,505 - -0.4 5,360,505 - +0.3 5,360,505 - -1.6 5,360,506 + +0.3 5,360,506 + +0.5 5,360,506 + +0.8 5,360,506 + +0.2 5,360,506 + +1.3 5,360,506 + -1.6 5,360,506 + -1.7 5,360,506 + +1.8 5,360,506 + -0.2 5,360,506 + +0.1 5,360,507 - -0.6 5,360,508 + +1.8 5,360,555 + -0.2 5,360,559 + +0.2 5,360,560 - -1.9 5,360,560 - -0.1 5,360,663 - Pf1N1B4_4851 0.12 -1.7 5,360,663 - Pf1N1B4_4851 0.12 -0.8 5,360,663 - Pf1N1B4_4851 0.12 -1.2 5,360,877 + Pf1N1B4_4851 0.37 -1.1 5,360,955 + Pf1N1B4_4851 0.46 -0.8 5,361,289 - Pf1N1B4_4851 0.84 +0.3 5,361,339 + +0.3 5,361,339 + -1.6 5,361,394 - +0.0 5,361,481 - Pf1N1B4_4852 0.37 -0.4 5,361,481 - Pf1N1B4_4852 0.37 +0.4 5,361,481 - Pf1N1B4_4852 0.37 -0.4 5,361,577 - -2.1 5,361,577 - +0.2 5,361,593 + +0.2 5,361,594 - -0.6 5,361,594 - +1.0 5,361,609 + -0.7 5,361,628 - -1.6 5,361,694 - -1.2 5,362,310 + -0.8 5,362,403 + -1.7
Or see this region's nucleotide sequence