Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3234

Experiment: copper (II) chloride 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_3232 and Pf1N1B4_3233 overlap by 1 nucleotidesPf1N1B4_3233 and Pf1N1B4_3234 overlap by 1 nucleotidesPf1N1B4_3234 and Pf1N1B4_3235 are separated by 51 nucleotidesPf1N1B4_3235 and Pf1N1B4_3236 are separated by 1 nucleotides Pf1N1B4_3232 - 3-oxoadipate CoA-transferase subunit A (EC 2.8.3.6); Glutaconate CoA-transferase subunit A (EC 2.8.3.12), at 3,619,249 to 3,620,106 _3232 Pf1N1B4_3233 - 3-oxoadipate CoA-transferase subunit B (EC 2.8.3.6); Glutaconate CoA-transferase subunit B (EC 2.8.3.12), at 3,620,106 to 3,620,885 _3233 Pf1N1B4_3234 - Beta-ketoadipyl CoA thiolase (EC 2.3.1.-), at 3,620,885 to 3,622,087 _3234 Pf1N1B4_3235 - Protocatechuate 3,4-dioxygenase beta chain (EC 1.13.11.3), at 3,622,139 to 3,622,843 _3235 Pf1N1B4_3236 - Protocatechuate 3,4-dioxygenase alpha chain (EC 1.13.11.3), at 3,622,845 to 3,623,411 _3236 Position (kb) 3620 3621 3622 3623Strain fitness (log2 ratio) -2 -1 0 1 2at 3619.920 kb on - strand, within Pf1N1B4_3232at 3619.978 kb on + strand, within Pf1N1B4_3232at 3619.978 kb on + strand, within Pf1N1B4_3232at 3619.978 kb on + strandat 3619.979 kb on - strand, within Pf1N1B4_3232at 3619.979 kb on - strand, within Pf1N1B4_3232at 3620.038 kb on + strandat 3620.038 kb on + strandat 3620.038 kb on + strandat 3620.038 kb on + strandat 3620.038 kb on + strandat 3620.038 kb on + strandat 3620.038 kb on + strandat 3620.039 kb on - strandat 3620.039 kb on - strandat 3620.039 kb on - strandat 3620.039 kb on - strandat 3620.104 kb on + strandat 3620.104 kb on + strandat 3620.104 kb on + strandat 3620.105 kb on - strandat 3620.105 kb on - strandat 3620.105 kb on - strandat 3620.112 kb on + strandat 3620.112 kb on + strandat 3620.112 kb on + strandat 3620.113 kb on - strandat 3620.113 kb on - strandat 3620.113 kb on - strandat 3620.113 kb on - strandat 3620.113 kb on - strandat 3620.113 kb on - strandat 3620.113 kb on - strandat 3620.239 kb on + strand, within Pf1N1B4_3233at 3620.239 kb on + strandat 3620.239 kb on + strand, within Pf1N1B4_3233at 3620.239 kb on + strand, within Pf1N1B4_3233at 3620.240 kb on - strand, within Pf1N1B4_3233at 3620.240 kb on - strand, within Pf1N1B4_3233at 3620.240 kb on - strand, within Pf1N1B4_3233at 3620.250 kb on + strand, within Pf1N1B4_3233at 3620.250 kb on + strand, within Pf1N1B4_3233at 3620.250 kb on + strand, within Pf1N1B4_3233at 3620.250 kb on + strand, within Pf1N1B4_3233at 3620.250 kb on + strand, within Pf1N1B4_3233at 3620.251 kb on - strand, within Pf1N1B4_3233at 3620.251 kb on - strand, within Pf1N1B4_3233at 3620.251 kb on - strand, within Pf1N1B4_3233at 3620.284 kb on + strand, within Pf1N1B4_3233at 3620.455 kb on - strand, within Pf1N1B4_3233at 3620.455 kb on - strand, within Pf1N1B4_3233at 3620.524 kb on + strand, within Pf1N1B4_3233at 3620.525 kb on - strand, within Pf1N1B4_3233at 3620.897 kb on + strandat 3620.897 kb on + strandat 3620.897 kb on + strandat 3620.897 kb on + strandat 3620.897 kb on + strandat 3620.897 kb on + strandat 3620.897 kb on + strandat 3620.897 kb on + strandat 3620.898 kb on - strandat 3620.898 kb on - strandat 3620.898 kb on - strandat 3620.898 kb on - strandat 3620.899 kb on + strandat 3620.899 kb on + strandat 3620.899 kb on + strandat 3620.899 kb on + strandat 3620.899 kb on + strandat 3620.899 kb on + strandat 3620.900 kb on - strandat 3620.900 kb on - strandat 3620.900 kb on - strandat 3621.084 kb on + strand, within Pf1N1B4_3234at 3621.084 kb on + strand, within Pf1N1B4_3234at 3621.084 kb on + strand, within Pf1N1B4_3234at 3621.085 kb on - strand, within Pf1N1B4_3234at 3621.726 kb on + strandat 3621.726 kb on + strand, within Pf1N1B4_3234at 3621.726 kb on + strand, within Pf1N1B4_3234at 3621.726 kb on + strand, within Pf1N1B4_3234at 3621.727 kb on - strand, within Pf1N1B4_3234at 3621.982 kb on - strandat 3622.104 kb on + strandat 3622.105 kb on - strandat 3622.116 kb on + strandat 3622.119 kb on + strandat 3622.119 kb on + strandat 3622.119 kb on + strandat 3622.120 kb on - strandat 3622.138 kb on - strandat 3622.138 kb on - strandat 3622.190 kb on + strandat 3622.190 kb on + strandat 3622.191 kb on - strandat 3622.206 kb on - strandat 3622.365 kb on + strandat 3622.365 kb on + strand, within Pf1N1B4_3235at 3622.365 kb on + strand, within Pf1N1B4_3235at 3622.366 kb on - strand, within Pf1N1B4_3235at 3622.366 kb on - strand, within Pf1N1B4_3235at 3622.366 kb on - strand, within Pf1N1B4_3235at 3622.664 kb on + strand, within Pf1N1B4_3235at 3622.664 kb on + strand, within Pf1N1B4_3235at 3622.664 kb on + strand, within Pf1N1B4_3235at 3622.664 kb on + strand, within Pf1N1B4_3235at 3622.665 kb on - strand, within Pf1N1B4_3235at 3622.665 kb on - strand, within Pf1N1B4_3235at 3622.665 kb on - strand, within Pf1N1B4_3235at 3622.665 kb on - strand, within Pf1N1B4_3235at 3622.665 kb on - strand, within Pf1N1B4_3235at 3622.665 kb on - strand, within Pf1N1B4_3235at 3622.692 kb on - strand, within Pf1N1B4_3235at 3622.692 kb on - strand, within Pf1N1B4_3235at 3622.703 kb on + strand, within Pf1N1B4_3235at 3622.778 kb on + strandat 3622.779 kb on - strandat 3622.841 kb on + strandat 3622.841 kb on + strandat 3622.841 kb on + strandat 3622.841 kb on + strandat 3622.841 kb on + strandat 3622.841 kb on + strandat 3622.842 kb on - strandat 3622.842 kb on - strandat 3622.842 kb on - strandat 3622.884 kb on + strandat 3622.885 kb on - strandat 3622.885 kb on - strandat 3623.043 kb on + strand, within Pf1N1B4_3236at 3623.043 kb on + strand, within Pf1N1B4_3236at 3623.043 kb on + strand, within Pf1N1B4_3236at 3623.043 kb on + strand, within Pf1N1B4_3236at 3623.044 kb on - strand, within Pf1N1B4_3236at 3623.044 kb on - strand, within Pf1N1B4_3236at 3623.044 kb on - strand, within Pf1N1B4_3236

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 2.5 mM
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3,619,920 - Pf1N1B4_3232 0.78 +0.1
3,619,978 + Pf1N1B4_3232 0.85 -1.1
3,619,978 + Pf1N1B4_3232 0.85 +0.3
3,619,978 + -1.3
3,619,979 - Pf1N1B4_3232 0.85 +0.1
3,619,979 - Pf1N1B4_3232 0.85 +1.1
3,620,038 + -1.7
3,620,038 + -1.2
3,620,038 + -0.4
3,620,038 + -1.5
3,620,038 + +0.5
3,620,038 + +0.8
3,620,038 + -0.6
3,620,039 - -0.3
3,620,039 - -1.9
3,620,039 - -0.7
3,620,039 - -1.3
3,620,104 + -2.0
3,620,104 + -0.3
3,620,104 + -1.0
3,620,105 - +2.3
3,620,105 - +1.0
3,620,105 - -2.3
3,620,112 + +1.0
3,620,112 + -0.3
3,620,112 + +0.0
3,620,113 - +1.3
3,620,113 - -0.1
3,620,113 - -0.7
3,620,113 - -0.0
3,620,113 - -0.0
3,620,113 - -1.5
3,620,113 - +0.3
3,620,239 + Pf1N1B4_3233 0.17 +0.6
3,620,239 + -1.0
3,620,239 + Pf1N1B4_3233 0.17 -0.1
3,620,239 + Pf1N1B4_3233 0.17 +0.6
3,620,240 - Pf1N1B4_3233 0.17 -2.3
3,620,240 - Pf1N1B4_3233 0.17 +0.7
3,620,240 - Pf1N1B4_3233 0.17 +0.6
3,620,250 + Pf1N1B4_3233 0.18 +1.3
3,620,250 + Pf1N1B4_3233 0.18 -0.7
3,620,250 + Pf1N1B4_3233 0.18 -1.5
3,620,250 + Pf1N1B4_3233 0.18 -1.0
3,620,250 + Pf1N1B4_3233 0.18 +1.9
3,620,251 - Pf1N1B4_3233 0.19 +0.3
3,620,251 - Pf1N1B4_3233 0.19 -0.2
3,620,251 - Pf1N1B4_3233 0.19 -0.3
3,620,284 + Pf1N1B4_3233 0.23 -0.4
3,620,455 - Pf1N1B4_3233 0.45 +0.9
3,620,455 - Pf1N1B4_3233 0.45 -0.1
3,620,524 + Pf1N1B4_3233 0.54 +0.4
3,620,525 - Pf1N1B4_3233 0.54 -0.3
3,620,897 + -0.5
3,620,897 + -1.1
3,620,897 + -0.3
3,620,897 + +0.3
3,620,897 + +0.2
3,620,897 + +2.3
3,620,897 + -0.1
3,620,897 + -0.5
3,620,898 - -1.0
3,620,898 - -0.9
3,620,898 - -0.1
3,620,898 - +1.2
3,620,899 + +0.8
3,620,899 + -0.0
3,620,899 + +0.2
3,620,899 + +0.6
3,620,899 + +0.2
3,620,899 + -0.3
3,620,900 - +1.0
3,620,900 - +1.1
3,620,900 - -0.1
3,621,084 + Pf1N1B4_3234 0.17 -0.3
3,621,084 + Pf1N1B4_3234 0.17 -0.3
3,621,084 + Pf1N1B4_3234 0.17 +1.3
3,621,085 - Pf1N1B4_3234 0.17 +0.3
3,621,726 + +0.3
3,621,726 + Pf1N1B4_3234 0.70 -1.7
3,621,726 + Pf1N1B4_3234 0.70 -1.2
3,621,726 + Pf1N1B4_3234 0.70 +0.7
3,621,727 - Pf1N1B4_3234 0.70 -1.5
3,621,982 - +1.3
3,622,104 + -0.4
3,622,105 - -1.3
3,622,116 + -0.7
3,622,119 + -0.3
3,622,119 + +0.7
3,622,119 + -0.0
3,622,120 - -0.3
3,622,138 - -0.0
3,622,138 - -0.3
3,622,190 + -0.1
3,622,190 + -1.0
3,622,191 - +0.2
3,622,206 - +0.3
3,622,365 + +0.7
3,622,365 + Pf1N1B4_3235 0.32 -0.0
3,622,365 + Pf1N1B4_3235 0.32 -0.2
3,622,366 - Pf1N1B4_3235 0.32 +2.1
3,622,366 - Pf1N1B4_3235 0.32 -0.7
3,622,366 - Pf1N1B4_3235 0.32 -0.6
3,622,664 + Pf1N1B4_3235 0.74 +1.6
3,622,664 + Pf1N1B4_3235 0.74 +1.3
3,622,664 + Pf1N1B4_3235 0.74 +0.8
3,622,664 + Pf1N1B4_3235 0.74 -1.0
3,622,665 - Pf1N1B4_3235 0.75 +2.6
3,622,665 - Pf1N1B4_3235 0.75 +1.3
3,622,665 - Pf1N1B4_3235 0.75 -2.1
3,622,665 - Pf1N1B4_3235 0.75 +1.7
3,622,665 - Pf1N1B4_3235 0.75 -0.7
3,622,665 - Pf1N1B4_3235 0.75 +0.5
3,622,692 - Pf1N1B4_3235 0.78 +0.5
3,622,692 - Pf1N1B4_3235 0.78 +0.3
3,622,703 + Pf1N1B4_3235 0.80 -2.3
3,622,778 + -0.4
3,622,779 - -0.0
3,622,841 + -1.0
3,622,841 + +0.3
3,622,841 + -0.9
3,622,841 + +0.2
3,622,841 + -0.0
3,622,841 + +0.3
3,622,842 - -2.5
3,622,842 - -0.3
3,622,842 - +0.1
3,622,884 + +0.1
3,622,885 - +1.6
3,622,885 - +1.1
3,623,043 + Pf1N1B4_3236 0.35 -0.0
3,623,043 + Pf1N1B4_3236 0.35 -0.7
3,623,043 + Pf1N1B4_3236 0.35 -0.7
3,623,043 + Pf1N1B4_3236 0.35 +0.3
3,623,044 - Pf1N1B4_3236 0.35 -0.0
3,623,044 - Pf1N1B4_3236 0.35 -0.7
3,623,044 - Pf1N1B4_3236 0.35 -0.3

Or see this region's nucleotide sequence