Experiment: R2A with Aluminum chloride 3.125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK54_RS08430 and LRK54_RS08435 are separated by 88 nucleotides LRK54_RS08435 and LRK54_RS08440 are separated by 84 nucleotides LRK54_RS08440 and LRK54_RS08445 are separated by 88 nucleotides
LRK54_RS08430: LRK54_RS08430 - hybrid sensor histidine kinase/response regulator, at 1,837,147 to 1,840,635
_RS08430
LRK54_RS08435: LRK54_RS08435 - 4'-phosphopantetheinyl transferase superfamily protein, at 1,840,724 to 1,841,368
_RS08435
LRK54_RS08440: LRK54_RS08440 - pyridoxine 5'-phosphate synthase, at 1,841,453 to 1,842,196
_RS08440
LRK54_RS08445: LRK54_RS08445 - biopolymer transporter ExbD, at 1,842,285 to 1,842,689
_RS08445
Position (kb) 1840
1841
1842 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 1839.800 kb on + strand, within LRK54_RS08430 at 1839.800 kb on + strand, within LRK54_RS08430 at 1839.800 kb on + strand, within LRK54_RS08430 at 1839.800 kb on + strand, within LRK54_RS08430 at 1839.800 kb on + strand, within LRK54_RS08430 at 1839.800 kb on + strand, within LRK54_RS08430 at 1839.800 kb on + strand, within LRK54_RS08430 at 1839.800 kb on + strand, within LRK54_RS08430 at 1839.800 kb on + strand, within LRK54_RS08430 at 1839.800 kb on + strand, within LRK54_RS08430 at 1839.800 kb on + strand, within LRK54_RS08430 at 1839.800 kb on + strand, within LRK54_RS08430 at 1839.801 kb on - strand, within LRK54_RS08430 at 1839.801 kb on - strand, within LRK54_RS08430 at 1839.801 kb on - strand, within LRK54_RS08430 at 1839.801 kb on - strand, within LRK54_RS08430 at 1839.801 kb on - strand, within LRK54_RS08430 at 1839.801 kb on - strand, within LRK54_RS08430 at 1839.801 kb on - strand, within LRK54_RS08430 at 1839.801 kb on - strand, within LRK54_RS08430 at 1840.005 kb on - strand, within LRK54_RS08430 at 1840.005 kb on - strand, within LRK54_RS08430 at 1840.124 kb on - strand, within LRK54_RS08430 at 1840.208 kb on + strand, within LRK54_RS08430 at 1840.208 kb on + strand, within LRK54_RS08430 at 1840.208 kb on + strand, within LRK54_RS08430 at 1840.208 kb on + strand, within LRK54_RS08430 at 1840.208 kb on + strand, within LRK54_RS08430 at 1840.208 kb on + strand, within LRK54_RS08430 at 1840.208 kb on + strand, within LRK54_RS08430 at 1840.208 kb on + strand, within LRK54_RS08430 at 1840.208 kb on + strand, within LRK54_RS08430 at 1840.208 kb on + strand, within LRK54_RS08430 at 1840.208 kb on + strand, within LRK54_RS08430 at 1840.208 kb on + strand, within LRK54_RS08430 at 1840.208 kb on + strand, within LRK54_RS08430 at 1840.208 kb on + strand, within LRK54_RS08430 at 1840.208 kb on + strand, within LRK54_RS08430 at 1840.208 kb on + strand, within LRK54_RS08430 at 1840.208 kb on + strand, within LRK54_RS08430 at 1840.209 kb on - strand, within LRK54_RS08430 at 1840.209 kb on - strand, within LRK54_RS08430 at 1840.209 kb on - strand, within LRK54_RS08430 at 1840.209 kb on - strand, within LRK54_RS08430 at 1840.209 kb on - strand, within LRK54_RS08430 at 1840.209 kb on - strand, within LRK54_RS08430 at 1840.209 kb on - strand, within LRK54_RS08430 at 1840.209 kb on - strand, within LRK54_RS08430 at 1840.209 kb on - strand, within LRK54_RS08430 at 1840.209 kb on - strand, within LRK54_RS08430 at 1840.209 kb on - strand, within LRK54_RS08430 at 1840.209 kb on - strand, within LRK54_RS08430 at 1840.209 kb on - strand, within LRK54_RS08430 at 1840.209 kb on - strand, within LRK54_RS08430 at 1840.209 kb on - strand, within LRK54_RS08430 at 1840.209 kb on - strand, within LRK54_RS08430 at 1840.209 kb on - strand, within LRK54_RS08430 at 1840.209 kb on - strand, within LRK54_RS08430 at 1840.209 kb on - strand, within LRK54_RS08430 at 1840.244 kb on + strand, within LRK54_RS08430 at 1840.244 kb on + strand, within LRK54_RS08430 at 1840.244 kb on + strand, within LRK54_RS08430 at 1840.244 kb on + strand, within LRK54_RS08430 at 1840.244 kb on + strand, within LRK54_RS08430 at 1840.244 kb on + strand, within LRK54_RS08430 at 1840.244 kb on + strand, within LRK54_RS08430 at 1840.244 kb on + strand, within LRK54_RS08430 at 1840.244 kb on + strand, within LRK54_RS08430 at 1840.244 kb on + strand, within LRK54_RS08430 at 1840.244 kb on + strand, within LRK54_RS08430 at 1840.244 kb on + strand, within LRK54_RS08430 at 1840.245 kb on - strand, within LRK54_RS08430 at 1840.245 kb on - strand, within LRK54_RS08430 at 1840.245 kb on - strand, within LRK54_RS08430 at 1840.245 kb on - strand, within LRK54_RS08430 at 1840.245 kb on - strand, within LRK54_RS08430 at 1840.245 kb on - strand, within LRK54_RS08430 at 1840.245 kb on - strand, within LRK54_RS08430 at 1840.245 kb on - strand, within LRK54_RS08430 at 1840.245 kb on - strand, within LRK54_RS08430 at 1840.245 kb on - strand, within LRK54_RS08430 at 1840.245 kb on - strand, within LRK54_RS08430 at 1840.245 kb on - strand, within LRK54_RS08430 at 1840.245 kb on - strand, within LRK54_RS08430 at 1840.245 kb on - strand, within LRK54_RS08430 at 1840.245 kb on - strand, within LRK54_RS08430 at 1840.245 kb on - strand, within LRK54_RS08430 at 1840.245 kb on - strand, within LRK54_RS08430 at 1840.245 kb on - strand, within LRK54_RS08430 at 1840.245 kb on - strand, within LRK54_RS08430 at 1840.245 kb on - strand, within LRK54_RS08430 at 1840.245 kb on - strand, within LRK54_RS08430 at 1840.245 kb on - strand, within LRK54_RS08430 at 1840.245 kb on - strand, within LRK54_RS08430 at 1840.245 kb on - strand, within LRK54_RS08430 at 1840.245 kb on - strand, within LRK54_RS08430 at 1840.245 kb on - strand, within LRK54_RS08430 at 1840.245 kb on - strand, within LRK54_RS08430 at 1840.418 kb on + strand at 1840.418 kb on + strand at 1840.418 kb on + strand at 1840.418 kb on + strand at 1840.418 kb on + strand at 1840.418 kb on + strand at 1840.419 kb on - strand at 1840.419 kb on - strand at 1840.419 kb on - strand at 1840.419 kb on - strand at 1840.430 kb on + strand at 1840.430 kb on + strand at 1840.430 kb on + strand at 1840.430 kb on + strand at 1840.431 kb on - strand at 1840.431 kb on - strand at 1840.431 kb on - strand at 1840.431 kb on - strand at 1840.431 kb on - strand at 1840.431 kb on - strand at 1840.431 kb on - strand at 1840.431 kb on - strand at 1840.431 kb on - strand at 1840.431 kb on - strand at 1840.431 kb on - strand at 1840.469 kb on + strand at 1840.469 kb on + strand at 1840.470 kb on - strand at 1840.470 kb on - strand at 1840.470 kb on - strand at 1840.470 kb on - strand at 1840.470 kb on - strand at 1840.470 kb on - strand at 1840.470 kb on - strand at 1840.470 kb on - strand at 1840.470 kb on - strand at 1840.490 kb on + strand at 1840.490 kb on + strand at 1840.490 kb on + strand at 1840.490 kb on + strand at 1840.490 kb on + strand at 1840.490 kb on + strand at 1840.490 kb on + strand at 1840.490 kb on + strand at 1840.490 kb on + strand at 1840.490 kb on + strand at 1840.490 kb on + strand at 1840.490 kb on + strand at 1840.490 kb on + strand at 1840.490 kb on + strand at 1840.490 kb on + strand at 1840.490 kb on + strand at 1840.490 kb on + strand at 1840.490 kb on + strand at 1840.490 kb on + strand at 1840.490 kb on + strand at 1840.490 kb on + strand at 1840.490 kb on + strand at 1840.490 kb on + strand at 1840.490 kb on + strand at 1840.490 kb on + strand at 1840.490 kb on + strand at 1840.490 kb on + strand at 1840.490 kb on + strand at 1840.490 kb on + strand at 1840.490 kb on + strand at 1840.490 kb on + strand at 1840.490 kb on + strand at 1840.490 kb on + strand at 1840.490 kb on + strand at 1840.490 kb on + strand at 1840.491 kb on - strand at 1840.491 kb on - strand at 1840.491 kb on - strand at 1840.491 kb on - strand at 1840.491 kb on - strand at 1840.491 kb on - strand at 1840.491 kb on - strand at 1840.491 kb on - strand at 1840.491 kb on - strand at 1840.491 kb on - strand at 1840.491 kb on - strand at 1840.491 kb on - strand at 1840.491 kb on - strand at 1840.491 kb on - strand at 1840.491 kb on - strand at 1840.491 kb on - strand at 1840.491 kb on - strand at 1840.491 kb on - strand at 1840.491 kb on - strand at 1840.491 kb on - strand at 1840.491 kb on - strand at 1840.491 kb on - strand at 1840.511 kb on + strand at 1840.511 kb on + strand at 1840.511 kb on + strand at 1840.511 kb on + strand at 1840.511 kb on + strand at 1840.511 kb on + strand at 1840.512 kb on - strand at 1840.512 kb on - strand at 1840.512 kb on - strand at 1840.512 kb on - strand at 1840.512 kb on - strand at 1840.512 kb on - strand at 1840.512 kb on - strand at 1840.544 kb on + strand at 1840.544 kb on + strand at 1840.544 kb on + strand at 1840.545 kb on - strand at 1840.545 kb on - strand at 1840.545 kb on - strand at 1840.568 kb on + strand at 1840.568 kb on + strand at 1840.568 kb on + strand at 1840.568 kb on + strand at 1840.568 kb on + strand at 1840.569 kb on - strand at 1840.569 kb on - strand at 1840.595 kb on + strand at 1840.595 kb on + strand at 1840.595 kb on + strand at 1840.595 kb on + strand at 1840.595 kb on + strand at 1840.595 kb on + strand at 1840.595 kb on + strand at 1840.595 kb on + strand at 1840.595 kb on + strand at 1840.595 kb on + strand at 1840.595 kb on + strand at 1840.595 kb on + strand at 1840.595 kb on + strand at 1840.595 kb on + strand at 1840.595 kb on + strand at 1840.595 kb on + strand at 1840.595 kb on + strand at 1840.595 kb on + strand at 1840.595 kb on + strand at 1840.596 kb on - strand at 1840.596 kb on - strand at 1840.596 kb on - strand at 1840.596 kb on - strand at 1840.596 kb on - strand at 1840.596 kb on - strand at 1840.596 kb on - strand at 1840.596 kb on - strand at 1840.596 kb on - strand at 1840.596 kb on - strand at 1840.596 kb on - strand at 1840.596 kb on - strand at 1840.596 kb on - strand at 1840.758 kb on + strand at 1840.758 kb on + strand at 1840.758 kb on + strand at 1840.758 kb on + strand at 1840.758 kb on + strand at 1840.758 kb on + strand at 1840.758 kb on + strand at 1840.758 kb on + strand at 1840.758 kb on + strand at 1840.758 kb on + strand at 1840.758 kb on + strand at 1840.758 kb on + strand at 1840.758 kb on + strand at 1840.758 kb on + strand at 1840.758 kb on + strand at 1840.758 kb on + strand at 1840.758 kb on + strand at 1840.759 kb on - strand at 1840.759 kb on - strand at 1840.759 kb on - strand at 1840.759 kb on - strand at 1840.759 kb on - strand at 1840.759 kb on - strand at 1840.759 kb on - strand at 1840.759 kb on - strand at 1840.759 kb on - strand at 1840.759 kb on - strand at 1840.759 kb on - strand at 1840.759 kb on - strand at 1840.759 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Aluminum chloride 3.125 mM remove 1,839,800 + LRK54_RS08430 0.76 +0.9 1,839,800 + LRK54_RS08430 0.76 +0.7 1,839,800 + LRK54_RS08430 0.76 +1.0 1,839,800 + LRK54_RS08430 0.76 +0.6 1,839,800 + LRK54_RS08430 0.76 +0.3 1,839,800 + LRK54_RS08430 0.76 +0.6 1,839,800 + LRK54_RS08430 0.76 +0.1 1,839,800 + LRK54_RS08430 0.76 +1.6 1,839,800 + LRK54_RS08430 0.76 +0.4 1,839,800 + LRK54_RS08430 0.76 -2.2 1,839,800 + LRK54_RS08430 0.76 +0.2 1,839,800 + LRK54_RS08430 0.76 +0.6 1,839,801 - LRK54_RS08430 0.76 +0.7 1,839,801 - LRK54_RS08430 0.76 +0.8 1,839,801 - LRK54_RS08430 0.76 +0.4 1,839,801 - LRK54_RS08430 0.76 +0.9 1,839,801 - LRK54_RS08430 0.76 +0.8 1,839,801 - LRK54_RS08430 0.76 +2.8 1,839,801 - LRK54_RS08430 0.76 -0.4 1,839,801 - LRK54_RS08430 0.76 +1.8 1,840,005 - LRK54_RS08430 0.82 +1.7 1,840,005 - LRK54_RS08430 0.82 +1.1 1,840,124 - LRK54_RS08430 0.85 -0.9 1,840,208 + LRK54_RS08430 0.88 +0.4 1,840,208 + LRK54_RS08430 0.88 +0.2 1,840,208 + LRK54_RS08430 0.88 -1.9 1,840,208 + LRK54_RS08430 0.88 +0.1 1,840,208 + LRK54_RS08430 0.88 +0.0 1,840,208 + LRK54_RS08430 0.88 +0.9 1,840,208 + LRK54_RS08430 0.88 -0.8 1,840,208 + LRK54_RS08430 0.88 +0.5 1,840,208 + LRK54_RS08430 0.88 +0.2 1,840,208 + LRK54_RS08430 0.88 +0.4 1,840,208 + LRK54_RS08430 0.88 +0.4 1,840,208 + LRK54_RS08430 0.88 +0.6 1,840,208 + LRK54_RS08430 0.88 +0.8 1,840,208 + LRK54_RS08430 0.88 -0.1 1,840,208 + LRK54_RS08430 0.88 -0.2 1,840,208 + LRK54_RS08430 0.88 +0.5 1,840,208 + LRK54_RS08430 0.88 +0.9 1,840,209 - LRK54_RS08430 0.88 +0.2 1,840,209 - LRK54_RS08430 0.88 -0.4 1,840,209 - LRK54_RS08430 0.88 -0.9 1,840,209 - LRK54_RS08430 0.88 +0.3 1,840,209 - LRK54_RS08430 0.88 -0.4 1,840,209 - LRK54_RS08430 0.88 +0.9 1,840,209 - LRK54_RS08430 0.88 +0.2 1,840,209 - LRK54_RS08430 0.88 +1.1 1,840,209 - LRK54_RS08430 0.88 +1.3 1,840,209 - LRK54_RS08430 0.88 +0.6 1,840,209 - LRK54_RS08430 0.88 +1.4 1,840,209 - LRK54_RS08430 0.88 +0.9 1,840,209 - LRK54_RS08430 0.88 +1.0 1,840,209 - LRK54_RS08430 0.88 +0.5 1,840,209 - LRK54_RS08430 0.88 +0.4 1,840,209 - LRK54_RS08430 0.88 -0.3 1,840,209 - LRK54_RS08430 0.88 +0.3 1,840,209 - LRK54_RS08430 0.88 -0.0 1,840,209 - LRK54_RS08430 0.88 +0.2 1,840,244 + LRK54_RS08430 0.89 +0.4 1,840,244 + LRK54_RS08430 0.89 +0.5 1,840,244 + LRK54_RS08430 0.89 -1.3 1,840,244 + LRK54_RS08430 0.89 -0.8 1,840,244 + LRK54_RS08430 0.89 +0.7 1,840,244 + LRK54_RS08430 0.89 -0.7 1,840,244 + LRK54_RS08430 0.89 +0.7 1,840,244 + LRK54_RS08430 0.89 +0.6 1,840,244 + LRK54_RS08430 0.89 +0.1 1,840,244 + LRK54_RS08430 0.89 -1.2 1,840,244 + LRK54_RS08430 0.89 +0.3 1,840,244 + LRK54_RS08430 0.89 +0.1 1,840,245 - LRK54_RS08430 0.89 +0.5 1,840,245 - LRK54_RS08430 0.89 +0.1 1,840,245 - LRK54_RS08430 0.89 +1.1 1,840,245 - LRK54_RS08430 0.89 +1.2 1,840,245 - LRK54_RS08430 0.89 +2.3 1,840,245 - LRK54_RS08430 0.89 +0.9 1,840,245 - LRK54_RS08430 0.89 +0.7 1,840,245 - LRK54_RS08430 0.89 -0.6 1,840,245 - LRK54_RS08430 0.89 +0.7 1,840,245 - LRK54_RS08430 0.89 +0.2 1,840,245 - LRK54_RS08430 0.89 +0.6 1,840,245 - LRK54_RS08430 0.89 +1.1 1,840,245 - LRK54_RS08430 0.89 -0.7 1,840,245 - LRK54_RS08430 0.89 -4.4 1,840,245 - LRK54_RS08430 0.89 -1.3 1,840,245 - LRK54_RS08430 0.89 -0.2 1,840,245 - LRK54_RS08430 0.89 +1.7 1,840,245 - LRK54_RS08430 0.89 +0.0 1,840,245 - LRK54_RS08430 0.89 +1.1 1,840,245 - LRK54_RS08430 0.89 -0.0 1,840,245 - LRK54_RS08430 0.89 +1.3 1,840,245 - LRK54_RS08430 0.89 +0.5 1,840,245 - LRK54_RS08430 0.89 +1.9 1,840,245 - LRK54_RS08430 0.89 +0.9 1,840,245 - LRK54_RS08430 0.89 +0.0 1,840,245 - LRK54_RS08430 0.89 -0.1 1,840,245 - LRK54_RS08430 0.89 +0.6 1,840,418 + +0.9 1,840,418 + +1.4 1,840,418 + -0.1 1,840,418 + +0.9 1,840,418 + -0.5 1,840,418 + +0.2 1,840,419 - +0.3 1,840,419 - +0.1 1,840,419 - +0.7 1,840,419 - +1.8 1,840,430 + +1.7 1,840,430 + -0.4 1,840,430 + +1.1 1,840,430 + +0.5 1,840,431 - -0.0 1,840,431 - +1.1 1,840,431 - +0.5 1,840,431 - -1.2 1,840,431 - +0.7 1,840,431 - -0.2 1,840,431 - +0.4 1,840,431 - -0.2 1,840,431 - +0.2 1,840,431 - -0.5 1,840,431 - -0.0 1,840,469 + +0.3 1,840,469 + +0.1 1,840,470 - -0.8 1,840,470 - +0.1 1,840,470 - +0.6 1,840,470 - -0.6 1,840,470 - -0.6 1,840,470 - +0.2 1,840,470 - +0.4 1,840,470 - -1.5 1,840,470 - +0.4 1,840,490 + +0.1 1,840,490 + +1.1 1,840,490 + -0.7 1,840,490 + +0.7 1,840,490 + -3.4 1,840,490 + -0.0 1,840,490 + -0.7 1,840,490 + +0.1 1,840,490 + +1.3 1,840,490 + +0.8 1,840,490 + -0.2 1,840,490 + +1.1 1,840,490 + +0.9 1,840,490 + +0.3 1,840,490 + +1.9 1,840,490 + +0.6 1,840,490 + -0.1 1,840,490 + -0.3 1,840,490 + +0.1 1,840,490 + +0.5 1,840,490 + +0.3 1,840,490 + +0.7 1,840,490 + +0.8 1,840,490 + +1.2 1,840,490 + +0.9 1,840,490 + +0.7 1,840,490 + +0.4 1,840,490 + +0.7 1,840,490 + +1.7 1,840,490 + -1.0 1,840,490 + +0.6 1,840,490 + +0.1 1,840,490 + +0.3 1,840,490 + +0.8 1,840,490 + -1.0 1,840,491 - +0.0 1,840,491 - +0.5 1,840,491 - +0.9 1,840,491 - -1.3 1,840,491 - +0.8 1,840,491 - +0.4 1,840,491 - +0.1 1,840,491 - +1.4 1,840,491 - +0.4 1,840,491 - +1.2 1,840,491 - +1.0 1,840,491 - +0.6 1,840,491 - +0.3 1,840,491 - +0.4 1,840,491 - +0.2 1,840,491 - +1.1 1,840,491 - +1.4 1,840,491 - +0.1 1,840,491 - +0.0 1,840,491 - -0.0 1,840,491 - +0.1 1,840,491 - +0.7 1,840,511 + +0.3 1,840,511 + +0.4 1,840,511 + -1.1 1,840,511 + +1.5 1,840,511 + +0.3 1,840,511 + -0.0 1,840,512 - +0.6 1,840,512 - -2.1 1,840,512 - +1.4 1,840,512 - +0.6 1,840,512 - +1.5 1,840,512 - +1.3 1,840,512 - -1.4 1,840,544 + +1.7 1,840,544 + -0.2 1,840,544 + +0.4 1,840,545 - +0.5 1,840,545 - +0.7 1,840,545 - +0.3 1,840,568 + -1.2 1,840,568 + +0.9 1,840,568 + +0.9 1,840,568 + +0.5 1,840,568 + +0.1 1,840,569 - -0.4 1,840,569 - +0.4 1,840,595 + +0.3 1,840,595 + +0.1 1,840,595 + -0.8 1,840,595 + +1.8 1,840,595 + +1.3 1,840,595 + -0.2 1,840,595 + -0.2 1,840,595 + +0.3 1,840,595 + +0.7 1,840,595 + +0.5 1,840,595 + -0.2 1,840,595 + -0.8 1,840,595 + +0.3 1,840,595 + +0.3 1,840,595 + +0.6 1,840,595 + -1.2 1,840,595 + +0.8 1,840,595 + +0.0 1,840,595 + -0.2 1,840,596 - +0.9 1,840,596 - +0.9 1,840,596 - -0.1 1,840,596 - +0.7 1,840,596 - +1.0 1,840,596 - -0.6 1,840,596 - -0.1 1,840,596 - +0.5 1,840,596 - -0.7 1,840,596 - +0.2 1,840,596 - +1.6 1,840,596 - +1.0 1,840,596 - +0.7 1,840,758 + +0.5 1,840,758 + -1.3 1,840,758 + +0.6 1,840,758 + -0.0 1,840,758 + +1.1 1,840,758 + +0.6 1,840,758 + -0.5 1,840,758 + +0.9 1,840,758 + -0.3 1,840,758 + +0.4 1,840,758 + -0.1 1,840,758 + -0.7 1,840,758 + -0.3 1,840,758 + +0.2 1,840,758 + +0.3 1,840,758 + +2.1 1,840,758 + +0.3 1,840,759 - -0.9 1,840,759 - -0.4 1,840,759 - -0.7 1,840,759 - -1.0 1,840,759 - -0.2 1,840,759 - -0.4 1,840,759 - -0.1 1,840,759 - +0.0 1,840,759 - +1.0 1,840,759 - -0.7 1,840,759 - -0.2 1,840,759 - -0.6 1,840,759 - +1.4
Or see this region's nucleotide sequence