Experiment: Xylitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS20110 and HSERO_RS20115 are separated by 494 nucleotides HSERO_RS20115 and HSERO_RS20120 are separated by 461 nucleotides
HSERO_RS20110: HSERO_RS20110 - ABC transporter substrate-binding protein, at 4,614,091 to 4,615,158
_RS20110
HSERO_RS20115: HSERO_RS20115 - methyl-accepting chemotaxis protein, at 4,615,653 to 4,617,287
_RS20115
HSERO_RS20120: HSERO_RS20120 - peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysins protein, at 4,617,749 to 4,618,588
_RS20120
Position (kb) 4615
4616
4617
4618 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4614.762 kb on + strand, within HSERO_RS20110 at 4614.982 kb on + strand at 4615.004 kb on + strand, within HSERO_RS20110 at 4615.018 kb on - strand at 4615.112 kb on + strand at 4615.128 kb on - strand at 4615.243 kb on + strand at 4615.258 kb on + strand at 4615.266 kb on - strand at 4615.271 kb on - strand at 4615.281 kb on - strand at 4615.468 kb on - strand at 4615.603 kb on - strand at 4615.642 kb on - strand at 4615.736 kb on + strand at 4615.756 kb on - strand at 4615.834 kb on - strand, within HSERO_RS20115 at 4615.866 kb on - strand, within HSERO_RS20115 at 4615.866 kb on - strand, within HSERO_RS20115 at 4615.901 kb on - strand, within HSERO_RS20115 at 4615.991 kb on - strand, within HSERO_RS20115 at 4616.425 kb on - strand, within HSERO_RS20115 at 4616.512 kb on + strand, within HSERO_RS20115 at 4616.554 kb on + strand, within HSERO_RS20115 at 4616.677 kb on - strand, within HSERO_RS20115 at 4616.781 kb on + strand, within HSERO_RS20115 at 4616.850 kb on + strand, within HSERO_RS20115 at 4616.853 kb on - strand, within HSERO_RS20115 at 4616.855 kb on + strand, within HSERO_RS20115 at 4616.896 kb on - strand, within HSERO_RS20115 at 4616.921 kb on - strand, within HSERO_RS20115 at 4616.963 kb on + strand, within HSERO_RS20115 at 4617.086 kb on + strand, within HSERO_RS20115 at 4617.109 kb on - strand, within HSERO_RS20115 at 4617.236 kb on - strand at 4617.296 kb on - strand at 4617.372 kb on - strand at 4617.445 kb on - strand at 4617.597 kb on + strand at 4617.687 kb on - strand at 4617.724 kb on - strand at 4617.782 kb on + strand at 4617.948 kb on + strand, within HSERO_RS20120 at 4617.948 kb on + strand, within HSERO_RS20120 at 4617.948 kb on + strand, within HSERO_RS20120 at 4617.948 kb on + strand, within HSERO_RS20120 at 4617.953 kb on + strand, within HSERO_RS20120 at 4617.953 kb on + strand, within HSERO_RS20120 at 4617.956 kb on - strand, within HSERO_RS20120 at 4618.001 kb on + strand, within HSERO_RS20120 at 4618.062 kb on + strand, within HSERO_RS20120
Per-strain Table
Position Strand Gene LocusTag Fraction Xylitol (C) remove 4,614,762 + HSERO_RS20110 0.63 -1.0 4,614,982 + -0.5 4,615,004 + HSERO_RS20110 0.85 -0.0 4,615,018 - +0.1 4,615,112 + -1.3 4,615,128 - -1.2 4,615,243 + +0.8 4,615,258 + -2.0 4,615,266 - -1.5 4,615,271 - +0.4 4,615,281 - +0.4 4,615,468 - -1.5 4,615,603 - +0.5 4,615,642 - -0.3 4,615,736 + +1.6 4,615,756 - -0.6 4,615,834 - HSERO_RS20115 0.11 +0.7 4,615,866 - HSERO_RS20115 0.13 +0.5 4,615,866 - HSERO_RS20115 0.13 -0.2 4,615,901 - HSERO_RS20115 0.15 +0.5 4,615,991 - HSERO_RS20115 0.21 +0.5 4,616,425 - HSERO_RS20115 0.47 +0.8 4,616,512 + HSERO_RS20115 0.53 +0.4 4,616,554 + HSERO_RS20115 0.55 +0.3 4,616,677 - HSERO_RS20115 0.63 +0.9 4,616,781 + HSERO_RS20115 0.69 +0.2 4,616,850 + HSERO_RS20115 0.73 +0.5 4,616,853 - HSERO_RS20115 0.73 +0.1 4,616,855 + HSERO_RS20115 0.74 +0.5 4,616,896 - HSERO_RS20115 0.76 +2.2 4,616,921 - HSERO_RS20115 0.78 -0.1 4,616,963 + HSERO_RS20115 0.80 -0.2 4,617,086 + HSERO_RS20115 0.88 +0.3 4,617,109 - HSERO_RS20115 0.89 -0.0 4,617,236 - -0.1 4,617,296 - -0.4 4,617,372 - +0.6 4,617,445 - -0.5 4,617,597 + -0.3 4,617,687 - +0.7 4,617,724 - -0.9 4,617,782 + -0.7 4,617,948 + HSERO_RS20120 0.24 -0.6 4,617,948 + HSERO_RS20120 0.24 -0.2 4,617,948 + HSERO_RS20120 0.24 -0.4 4,617,948 + HSERO_RS20120 0.24 +1.2 4,617,953 + HSERO_RS20120 0.24 +0.1 4,617,953 + HSERO_RS20120 0.24 +0.3 4,617,956 - HSERO_RS20120 0.25 +0.6 4,618,001 + HSERO_RS20120 0.30 +0.4 4,618,062 + HSERO_RS20120 0.37 +0.3
Or see this region's nucleotide sequence