Experiment: Xylitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS18030 and HSERO_RS18035 are separated by 160 nucleotides HSERO_RS18035 and HSERO_RS18040 are separated by 29 nucleotides HSERO_RS18040 and HSERO_RS18045 are separated by 318 nucleotides HSERO_RS18045 and HSERO_RS18050 are separated by 240 nucleotides
HSERO_RS18030: HSERO_RS18030 - response regulator SirA, at 4,144,537 to 4,144,773
_RS18030
HSERO_RS18035: HSERO_RS18035 - ADP-ribose pyrophosphatase, at 4,144,934 to 4,145,488
_RS18035
HSERO_RS18040: HSERO_RS18040 - alanyl-tRNA synthetase, at 4,145,518 to 4,148,142
_RS18040
HSERO_RS18045: HSERO_RS18045 - hypothetical protein, at 4,148,461 to 4,148,676
_RS18045
HSERO_RS18050: HSERO_RS18050 - glycerophosphodiester phosphodiesterase, at 4,148,917 to 4,149,660
_RS18050
Position (kb) 4145
4146
4147
4148
4149 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4144.835 kb on - strand at 4144.864 kb on + strand at 4144.871 kb on - strand at 4144.872 kb on - strand at 4145.078 kb on - strand, within HSERO_RS18035 at 4145.133 kb on - strand, within HSERO_RS18035 at 4145.271 kb on + strand, within HSERO_RS18035 at 4145.276 kb on + strand, within HSERO_RS18035 at 4145.291 kb on + strand, within HSERO_RS18035 at 4145.451 kb on - strand at 4148.246 kb on + strand at 4148.254 kb on + strand at 4148.254 kb on + strand at 4148.381 kb on - strand at 4148.383 kb on + strand at 4148.404 kb on + strand at 4148.406 kb on + strand at 4148.412 kb on - strand at 4148.414 kb on - strand at 4148.498 kb on + strand, within HSERO_RS18045 at 4148.717 kb on + strand at 4148.741 kb on + strand at 4148.923 kb on - strand at 4148.962 kb on - strand at 4149.006 kb on + strand, within HSERO_RS18050 at 4149.035 kb on - strand, within HSERO_RS18050
Per-strain Table
Position Strand Gene LocusTag Fraction Xylitol (C) remove 4,144,835 - -2.0 4,144,864 + +1.3 4,144,871 - +1.8 4,144,872 - +0.4 4,145,078 - HSERO_RS18035 0.26 -3.5 4,145,133 - HSERO_RS18035 0.36 -0.0 4,145,271 + HSERO_RS18035 0.61 -0.0 4,145,276 + HSERO_RS18035 0.62 -0.3 4,145,291 + HSERO_RS18035 0.64 +0.6 4,145,451 - -0.6 4,148,246 + -0.5 4,148,254 + +0.2 4,148,254 + +0.6 4,148,381 - +0.6 4,148,383 + +1.1 4,148,404 + -0.1 4,148,406 + -0.2 4,148,412 - -0.1 4,148,414 - +0.5 4,148,498 + HSERO_RS18045 0.17 -1.4 4,148,717 + -0.3 4,148,741 + +2.5 4,148,923 - -0.5 4,148,962 - +0.6 4,149,006 + HSERO_RS18050 0.12 +0.0 4,149,035 - HSERO_RS18050 0.16 -0.8
Or see this region's nucleotide sequence