Experiment: Xylitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS02140 and HSERO_RS02145 are separated by 188 nucleotides HSERO_RS02145 and HSERO_RS02150 are separated by 236 nucleotides HSERO_RS02150 and HSERO_RS02155 are separated by 233 nucleotides HSERO_RS02155 and HSERO_RS02160 are separated by 108 nucleotides
HSERO_RS02140: HSERO_RS02140 - thiamine-phosphate synthase, at 466,601 to 467,233
_RS02140
HSERO_RS02145: HSERO_RS02145 - ferritin, at 467,422 to 467,916
_RS02145
HSERO_RS02150: HSERO_RS02150 - MFS transporter, at 468,153 to 469,328
_RS02150
HSERO_RS02155: HSERO_RS02155 - chorismate mutase, at 469,562 to 470,131
_RS02155
HSERO_RS02160: HSERO_RS02160 - DNA-dependent helicase, at 470,240 to 472,519
_RS02160
Position (kb) 468
469
470 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 467.172 kb on + strand at 467.210 kb on - strand at 467.264 kb on + strand at 467.264 kb on + strand at 467.264 kb on + strand at 467.348 kb on - strand at 467.808 kb on + strand, within HSERO_RS02145 at 467.923 kb on + strand at 467.931 kb on - strand at 467.953 kb on + strand at 467.955 kb on + strand at 467.961 kb on - strand at 467.963 kb on - strand at 467.963 kb on - strand at 467.963 kb on - strand at 468.104 kb on + strand at 468.151 kb on + strand at 468.170 kb on + strand at 468.236 kb on + strand at 468.250 kb on + strand at 468.404 kb on + strand, within HSERO_RS02150 at 468.419 kb on + strand, within HSERO_RS02150 at 468.424 kb on + strand, within HSERO_RS02150 at 468.622 kb on - strand, within HSERO_RS02150 at 468.627 kb on - strand, within HSERO_RS02150 at 468.685 kb on - strand, within HSERO_RS02150 at 468.686 kb on - strand, within HSERO_RS02150 at 468.715 kb on - strand, within HSERO_RS02150 at 468.842 kb on - strand, within HSERO_RS02150 at 468.842 kb on - strand, within HSERO_RS02150 at 468.859 kb on + strand, within HSERO_RS02150 at 468.877 kb on - strand at 469.051 kb on - strand, within HSERO_RS02150 at 469.051 kb on - strand, within HSERO_RS02150 at 469.162 kb on + strand, within HSERO_RS02150 at 469.214 kb on + strand at 469.627 kb on + strand, within HSERO_RS02155 at 469.750 kb on - strand, within HSERO_RS02155 at 469.843 kb on + strand, within HSERO_RS02155 at 469.999 kb on - strand, within HSERO_RS02155 at 470.170 kb on + strand at 470.193 kb on - strand at 470.193 kb on - strand at 470.254 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Xylitol (C) remove 467,172 + -0.0 467,210 - -0.3 467,264 + -0.0 467,264 + +0.4 467,264 + +0.1 467,348 - -1.0 467,808 + HSERO_RS02145 0.78 -4.0 467,923 + -4.6 467,931 - -4.4 467,953 + -0.0 467,955 + -2.0 467,961 - -2.3 467,963 - -2.9 467,963 - -1.4 467,963 - -1.2 468,104 + -1.1 468,151 + -0.7 468,170 + -0.8 468,236 + -0.1 468,250 + -0.9 468,404 + HSERO_RS02150 0.21 -0.1 468,419 + HSERO_RS02150 0.23 +0.7 468,424 + HSERO_RS02150 0.23 -0.7 468,622 - HSERO_RS02150 0.40 -1.9 468,627 - HSERO_RS02150 0.40 -0.1 468,685 - HSERO_RS02150 0.45 -2.0 468,686 - HSERO_RS02150 0.45 +0.2 468,715 - HSERO_RS02150 0.48 +0.5 468,842 - HSERO_RS02150 0.59 +0.5 468,842 - HSERO_RS02150 0.59 -0.4 468,859 + HSERO_RS02150 0.60 +0.3 468,877 - +3.2 469,051 - HSERO_RS02150 0.76 +0.3 469,051 - HSERO_RS02150 0.76 -0.2 469,162 + HSERO_RS02150 0.86 -1.1 469,214 + +1.2 469,627 + HSERO_RS02155 0.11 +1.2 469,750 - HSERO_RS02155 0.33 -3.2 469,843 + HSERO_RS02155 0.49 -0.4 469,999 - HSERO_RS02155 0.77 -0.4 470,170 + -0.1 470,193 - -1.0 470,193 - +0.2 470,254 + -0.3
Or see this region's nucleotide sequence