Experiment: Xylitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS00240 and HSERO_RS00245 are separated by 30 nucleotides HSERO_RS00245 and HSERO_RS00250 are separated by 530 nucleotides HSERO_RS00250 and HSERO_RS00255 overlap by 4 nucleotides
HSERO_RS00240: HSERO_RS00240 - LysR family transcription regulator protein, at 62,188 to 63,078
_RS00240
HSERO_RS00245: HSERO_RS00245 - hypothetical protein, at 63,109 to 63,564
_RS00245
HSERO_RS00250: HSERO_RS00250 - iron transporter, at 64,095 to 64,346
_RS00250
HSERO_RS00255: HSERO_RS00255 - iron transporter FeoB, at 64,343 to 66,169
_RS00255
Position (kb) 63
64 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 62.174 kb on + strand at 62.174 kb on + strand at 62.174 kb on + strand at 62.182 kb on - strand at 62.182 kb on - strand at 62.300 kb on - strand, within HSERO_RS00240 at 62.364 kb on + strand, within HSERO_RS00240 at 62.407 kb on - strand, within HSERO_RS00240 at 62.562 kb on + strand, within HSERO_RS00240 at 62.746 kb on + strand, within HSERO_RS00240 at 62.871 kb on + strand, within HSERO_RS00240 at 62.907 kb on - strand, within HSERO_RS00240 at 63.054 kb on - strand at 63.231 kb on - strand, within HSERO_RS00245 at 63.300 kb on + strand, within HSERO_RS00245 at 63.347 kb on - strand, within HSERO_RS00245 at 63.347 kb on - strand, within HSERO_RS00245 at 63.472 kb on + strand, within HSERO_RS00245 at 63.518 kb on + strand, within HSERO_RS00245 at 63.523 kb on + strand at 63.541 kb on + strand at 63.563 kb on - strand at 63.724 kb on + strand at 63.787 kb on + strand at 63.794 kb on + strand at 63.802 kb on - strand at 63.802 kb on - strand at 63.845 kb on - strand at 63.919 kb on - strand at 63.930 kb on - strand at 63.967 kb on + strand at 63.973 kb on + strand at 63.975 kb on - strand at 64.026 kb on + strand at 64.034 kb on - strand at 64.110 kb on - strand at 64.120 kb on - strand at 64.120 kb on - strand at 64.143 kb on - strand, within HSERO_RS00250 at 64.155 kb on - strand, within HSERO_RS00250 at 64.190 kb on + strand, within HSERO_RS00250 at 64.228 kb on - strand, within HSERO_RS00250 at 64.284 kb on + strand, within HSERO_RS00250 at 64.319 kb on + strand, within HSERO_RS00250 at 64.335 kb on + strand at 64.355 kb on + strand at 64.390 kb on + strand at 64.390 kb on + strand at 64.395 kb on + strand at 64.480 kb on - strand at 64.507 kb on - strand at 64.520 kb on - strand at 64.536 kb on - strand, within HSERO_RS00255 at 64.551 kb on + strand, within HSERO_RS00255
Per-strain Table
Position Strand Gene LocusTag Fraction Xylitol (C) remove 62,174 + -2.6 62,174 + +1.4 62,174 + +0.2 62,182 - +0.9 62,182 - -1.5 62,300 - HSERO_RS00240 0.13 +0.7 62,364 + HSERO_RS00240 0.20 -0.7 62,407 - HSERO_RS00240 0.25 -1.8 62,562 + HSERO_RS00240 0.42 -2.0 62,746 + HSERO_RS00240 0.63 -0.6 62,871 + HSERO_RS00240 0.77 -0.7 62,907 - HSERO_RS00240 0.81 -1.9 63,054 - +0.8 63,231 - HSERO_RS00245 0.27 -1.4 63,300 + HSERO_RS00245 0.42 -0.9 63,347 - HSERO_RS00245 0.52 +0.6 63,347 - HSERO_RS00245 0.52 -0.3 63,472 + HSERO_RS00245 0.80 -0.8 63,518 + HSERO_RS00245 0.90 -0.3 63,523 + -1.7 63,541 + +4.6 63,563 - +0.8 63,724 + +0.2 63,787 + +0.6 63,794 + -0.8 63,802 - -0.7 63,802 - -2.1 63,845 - -0.9 63,919 - +1.4 63,930 - +0.5 63,967 + +0.5 63,973 + -0.1 63,975 - -0.9 64,026 + -1.0 64,034 - -1.5 64,110 - -1.3 64,120 - -1.0 64,120 - -0.6 64,143 - HSERO_RS00250 0.19 -0.4 64,155 - HSERO_RS00250 0.24 -1.1 64,190 + HSERO_RS00250 0.38 +0.0 64,228 - HSERO_RS00250 0.53 +0.2 64,284 + HSERO_RS00250 0.75 +0.3 64,319 + HSERO_RS00250 0.89 +1.2 64,335 + +1.0 64,355 + -0.7 64,390 + +1.2 64,390 + +0.3 64,395 + +0.8 64,480 - -0.5 64,507 - +1.0 64,520 - +0.7 64,536 - HSERO_RS00255 0.11 +0.2 64,551 + HSERO_RS00255 0.11 +0.9
Or see this region's nucleotide sequence