Experiment: Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS20410 and HMPREF1058_RS17975 are separated by 148 nucleotides HMPREF1058_RS17975 and HMPREF1058_RS17970 are separated by 14 nucleotides HMPREF1058_RS17970 and HMPREF1058_RS17965 are separated by 11 nucleotides HMPREF1058_RS17965 and HMPREF1058_RS17960 overlap by 4 nucleotides
HMPREF1058_RS20410: HMPREF1058_RS20410 - hypothetical protein, at 288,443 to 288,675
_RS20410
HMPREF1058_RS17975: HMPREF1058_RS17975 - ATP-dependent dethiobiotin synthetase BioD, at 288,824 to 289,468
_RS17975
HMPREF1058_RS17970: HMPREF1058_RS17970 - malonyl-ACP O-methyltransferase BioC, at 289,483 to 290,238
_RS17970
HMPREF1058_RS17965: HMPREF1058_RS17965 - DUF452 family protein, at 290,250 to 290,903
_RS17965
HMPREF1058_RS17960: HMPREF1058_RS17960 - 8-amino-7-oxononanoate synthase, at 290,900 to 292,051
_RS17960
Position (kb) 289
290
291 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 288.490 kb on + strand, within HMPREF1058_RS20410 at 288.490 kb on + strand, within HMPREF1058_RS20410 at 288.491 kb on - strand, within HMPREF1058_RS20410 at 288.493 kb on + strand, within HMPREF1058_RS20410 at 288.520 kb on - strand, within HMPREF1058_RS20410 at 288.624 kb on + strand, within HMPREF1058_RS20410 at 288.625 kb on - strand, within HMPREF1058_RS20410 at 288.652 kb on + strand at 288.652 kb on + strand at 288.652 kb on + strand at 288.673 kb on + strand at 288.719 kb on + strand at 288.719 kb on + strand at 288.721 kb on + strand at 288.722 kb on - strand at 288.726 kb on + strand at 288.727 kb on - strand at 288.744 kb on + strand at 288.745 kb on - strand at 288.773 kb on + strand at 288.836 kb on + strand at 288.875 kb on - strand at 288.887 kb on - strand at 288.899 kb on - strand, within HMPREF1058_RS17975 at 288.899 kb on - strand, within HMPREF1058_RS17975 at 288.942 kb on + strand, within HMPREF1058_RS17975 at 288.942 kb on + strand, within HMPREF1058_RS17975 at 288.951 kb on + strand, within HMPREF1058_RS17975 at 288.952 kb on + strand, within HMPREF1058_RS17975 at 288.977 kb on + strand, within HMPREF1058_RS17975 at 288.978 kb on - strand, within HMPREF1058_RS17975 at 289.000 kb on + strand, within HMPREF1058_RS17975 at 289.009 kb on + strand, within HMPREF1058_RS17975 at 289.009 kb on + strand, within HMPREF1058_RS17975 at 289.065 kb on + strand, within HMPREF1058_RS17975 at 289.070 kb on + strand, within HMPREF1058_RS17975 at 289.071 kb on - strand, within HMPREF1058_RS17975 at 289.081 kb on + strand, within HMPREF1058_RS17975 at 289.122 kb on - strand, within HMPREF1058_RS17975 at 289.138 kb on - strand, within HMPREF1058_RS17975 at 289.278 kb on + strand, within HMPREF1058_RS17975 at 289.279 kb on - strand, within HMPREF1058_RS17975 at 289.363 kb on + strand, within HMPREF1058_RS17975 at 289.367 kb on - strand, within HMPREF1058_RS17975 at 289.454 kb on + strand at 289.507 kb on - strand at 289.508 kb on + strand at 289.509 kb on - strand at 289.512 kb on + strand at 289.512 kb on + strand at 289.709 kb on + strand, within HMPREF1058_RS17970 at 289.710 kb on - strand, within HMPREF1058_RS17970 at 289.846 kb on - strand, within HMPREF1058_RS17970 at 289.848 kb on + strand, within HMPREF1058_RS17970 at 289.849 kb on - strand, within HMPREF1058_RS17970 at 289.904 kb on - strand, within HMPREF1058_RS17970 at 290.017 kb on - strand, within HMPREF1058_RS17970 at 290.123 kb on + strand, within HMPREF1058_RS17970 at 290.124 kb on - strand, within HMPREF1058_RS17970 at 290.132 kb on - strand, within HMPREF1058_RS17970 at 290.155 kb on + strand, within HMPREF1058_RS17970 at 290.230 kb on - strand at 290.251 kb on + strand at 290.306 kb on + strand at 290.307 kb on - strand at 290.383 kb on - strand, within HMPREF1058_RS17965 at 290.657 kb on + strand, within HMPREF1058_RS17965 at 290.924 kb on + strand at 291.012 kb on + strand at 291.095 kb on - strand, within HMPREF1058_RS17960
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml (C) remove 288,490 + HMPREF1058_RS20410 0.20 -1.3 288,490 + HMPREF1058_RS20410 0.20 -0.6 288,491 - HMPREF1058_RS20410 0.21 +1.5 288,493 + HMPREF1058_RS20410 0.21 +0.7 288,520 - HMPREF1058_RS20410 0.33 -0.1 288,624 + HMPREF1058_RS20410 0.78 -0.4 288,625 - HMPREF1058_RS20410 0.78 -1.6 288,652 + -0.3 288,652 + -0.4 288,652 + +0.1 288,673 + -0.2 288,719 + -0.9 288,719 + -0.8 288,721 + -1.1 288,722 - -0.2 288,726 + -0.3 288,727 - +0.9 288,744 + -2.1 288,745 - -2.5 288,773 + -1.0 288,836 + -1.3 288,875 - +0.3 288,887 - -1.1 288,899 - HMPREF1058_RS17975 0.12 -1.4 288,899 - HMPREF1058_RS17975 0.12 -2.8 288,942 + HMPREF1058_RS17975 0.18 -3.2 288,942 + HMPREF1058_RS17975 0.18 -1.7 288,951 + HMPREF1058_RS17975 0.20 -1.9 288,952 + HMPREF1058_RS17975 0.20 -2.6 288,977 + HMPREF1058_RS17975 0.24 -1.6 288,978 - HMPREF1058_RS17975 0.24 -3.5 289,000 + HMPREF1058_RS17975 0.27 -3.4 289,009 + HMPREF1058_RS17975 0.29 -2.6 289,009 + HMPREF1058_RS17975 0.29 -1.5 289,065 + HMPREF1058_RS17975 0.37 -3.1 289,070 + HMPREF1058_RS17975 0.38 -3.0 289,071 - HMPREF1058_RS17975 0.38 -1.7 289,081 + HMPREF1058_RS17975 0.40 -2.2 289,122 - HMPREF1058_RS17975 0.46 -1.8 289,138 - HMPREF1058_RS17975 0.49 -1.7 289,278 + HMPREF1058_RS17975 0.70 -1.6 289,279 - HMPREF1058_RS17975 0.71 -2.5 289,363 + HMPREF1058_RS17975 0.84 +1.3 289,367 - HMPREF1058_RS17975 0.84 -1.6 289,454 + -2.6 289,507 - -2.2 289,508 + -2.4 289,509 - -1.4 289,512 + -2.0 289,512 + -0.9 289,709 + HMPREF1058_RS17970 0.30 -1.6 289,710 - HMPREF1058_RS17970 0.30 -1.6 289,846 - HMPREF1058_RS17970 0.48 -3.0 289,848 + HMPREF1058_RS17970 0.48 -1.2 289,849 - HMPREF1058_RS17970 0.48 -0.4 289,904 - HMPREF1058_RS17970 0.56 -1.9 290,017 - HMPREF1058_RS17970 0.71 -0.9 290,123 + HMPREF1058_RS17970 0.85 -3.0 290,124 - HMPREF1058_RS17970 0.85 -1.7 290,132 - HMPREF1058_RS17970 0.86 -2.8 290,155 + HMPREF1058_RS17970 0.89 -1.3 290,230 - +0.3 290,251 + -2.7 290,306 + +0.3 290,307 - -0.9 290,383 - HMPREF1058_RS17965 0.20 -2.8 290,657 + HMPREF1058_RS17965 0.62 -1.9 290,924 + -1.0 291,012 + -1.1 291,095 - HMPREF1058_RS17960 0.17 -1.4
Or see this region's nucleotide sequence