Experiment: Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS17970 and HMPREF1058_RS17965 are separated by 11 nucleotides HMPREF1058_RS17965 and HMPREF1058_RS17960 overlap by 4 nucleotides HMPREF1058_RS17960 and HMPREF1058_RS17955 are separated by 27 nucleotides
HMPREF1058_RS17970: HMPREF1058_RS17970 - malonyl-ACP O-methyltransferase BioC, at 289,483 to 290,238
_RS17970
HMPREF1058_RS17965: HMPREF1058_RS17965 - DUF452 family protein, at 290,250 to 290,903
_RS17965
HMPREF1058_RS17960: HMPREF1058_RS17960 - 8-amino-7-oxononanoate synthase, at 290,900 to 292,051
_RS17960
HMPREF1058_RS17955: HMPREF1058_RS17955 - adenosylmethionine--8-amino-7-oxononanoate transaminase, at 292,079 to 293,350
_RS17955
Position (kb) 290
291
292
293 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 289.904 kb on - strand, within HMPREF1058_RS17970 at 290.017 kb on - strand, within HMPREF1058_RS17970 at 290.123 kb on + strand, within HMPREF1058_RS17970 at 290.124 kb on - strand, within HMPREF1058_RS17970 at 290.132 kb on - strand, within HMPREF1058_RS17970 at 290.155 kb on + strand, within HMPREF1058_RS17970 at 290.230 kb on - strand at 290.251 kb on + strand at 290.306 kb on + strand at 290.307 kb on - strand at 290.383 kb on - strand, within HMPREF1058_RS17965 at 290.657 kb on + strand, within HMPREF1058_RS17965 at 290.924 kb on + strand at 291.012 kb on + strand at 291.095 kb on - strand, within HMPREF1058_RS17960 at 291.303 kb on + strand, within HMPREF1058_RS17960 at 291.303 kb on + strand, within HMPREF1058_RS17960 at 291.303 kb on + strand, within HMPREF1058_RS17960 at 291.435 kb on + strand, within HMPREF1058_RS17960 at 291.443 kb on + strand, within HMPREF1058_RS17960 at 291.443 kb on + strand, within HMPREF1058_RS17960 at 291.443 kb on + strand, within HMPREF1058_RS17960 at 291.444 kb on - strand, within HMPREF1058_RS17960 at 291.444 kb on - strand, within HMPREF1058_RS17960 at 291.454 kb on - strand, within HMPREF1058_RS17960 at 291.530 kb on - strand, within HMPREF1058_RS17960 at 291.533 kb on + strand, within HMPREF1058_RS17960 at 291.533 kb on + strand, within HMPREF1058_RS17960 at 291.534 kb on - strand, within HMPREF1058_RS17960 at 291.539 kb on - strand, within HMPREF1058_RS17960 at 291.731 kb on - strand, within HMPREF1058_RS17960 at 291.793 kb on - strand, within HMPREF1058_RS17960 at 291.793 kb on - strand, within HMPREF1058_RS17960 at 291.796 kb on + strand, within HMPREF1058_RS17960 at 291.882 kb on - strand, within HMPREF1058_RS17960 at 292.019 kb on + strand at 292.089 kb on - strand at 292.100 kb on + strand at 292.100 kb on + strand at 292.101 kb on - strand at 292.101 kb on - strand at 292.106 kb on + strand at 292.166 kb on - strand at 292.167 kb on + strand at 292.369 kb on + strand, within HMPREF1058_RS17955 at 292.370 kb on - strand, within HMPREF1058_RS17955 at 292.435 kb on + strand, within HMPREF1058_RS17955 at 292.521 kb on + strand, within HMPREF1058_RS17955 at 292.540 kb on + strand, within HMPREF1058_RS17955 at 292.544 kb on + strand, within HMPREF1058_RS17955 at 292.668 kb on - strand, within HMPREF1058_RS17955 at 292.718 kb on + strand, within HMPREF1058_RS17955 at 292.724 kb on - strand, within HMPREF1058_RS17955 at 292.787 kb on + strand, within HMPREF1058_RS17955 at 292.787 kb on + strand, within HMPREF1058_RS17955 at 292.787 kb on + strand, within HMPREF1058_RS17955 at 292.787 kb on + strand, within HMPREF1058_RS17955 at 292.788 kb on - strand, within HMPREF1058_RS17955 at 292.943 kb on - strand, within HMPREF1058_RS17955 at 292.986 kb on + strand, within HMPREF1058_RS17955
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml (C) remove 289,904 - HMPREF1058_RS17970 0.56 -1.9 290,017 - HMPREF1058_RS17970 0.71 -0.9 290,123 + HMPREF1058_RS17970 0.85 -3.0 290,124 - HMPREF1058_RS17970 0.85 -1.7 290,132 - HMPREF1058_RS17970 0.86 -2.8 290,155 + HMPREF1058_RS17970 0.89 -1.3 290,230 - +0.3 290,251 + -2.7 290,306 + +0.3 290,307 - -0.9 290,383 - HMPREF1058_RS17965 0.20 -2.8 290,657 + HMPREF1058_RS17965 0.62 -1.9 290,924 + -1.0 291,012 + -1.1 291,095 - HMPREF1058_RS17960 0.17 -1.4 291,303 + HMPREF1058_RS17960 0.35 -2.1 291,303 + HMPREF1058_RS17960 0.35 -2.0 291,303 + HMPREF1058_RS17960 0.35 -2.1 291,435 + HMPREF1058_RS17960 0.46 -0.3 291,443 + HMPREF1058_RS17960 0.47 +1.3 291,443 + HMPREF1058_RS17960 0.47 -2.4 291,443 + HMPREF1058_RS17960 0.47 -1.8 291,444 - HMPREF1058_RS17960 0.47 -0.8 291,444 - HMPREF1058_RS17960 0.47 +0.7 291,454 - HMPREF1058_RS17960 0.48 +2.3 291,530 - HMPREF1058_RS17960 0.55 -2.1 291,533 + HMPREF1058_RS17960 0.55 -2.4 291,533 + HMPREF1058_RS17960 0.55 +0.2 291,534 - HMPREF1058_RS17960 0.55 -1.7 291,539 - HMPREF1058_RS17960 0.55 +2.3 291,731 - HMPREF1058_RS17960 0.72 -2.7 291,793 - HMPREF1058_RS17960 0.78 -0.7 291,793 - HMPREF1058_RS17960 0.78 -2.4 291,796 + HMPREF1058_RS17960 0.78 -0.9 291,882 - HMPREF1058_RS17960 0.85 -1.4 292,019 + -2.4 292,089 - +1.0 292,100 + -0.9 292,100 + +0.7 292,101 - -1.6 292,101 - -0.3 292,106 + -1.1 292,166 - -3.4 292,167 + -2.1 292,369 + HMPREF1058_RS17955 0.23 -2.1 292,370 - HMPREF1058_RS17955 0.23 -0.0 292,435 + HMPREF1058_RS17955 0.28 -2.5 292,521 + HMPREF1058_RS17955 0.35 -2.4 292,540 + HMPREF1058_RS17955 0.36 -1.4 292,544 + HMPREF1058_RS17955 0.37 -0.7 292,668 - HMPREF1058_RS17955 0.46 -2.0 292,718 + HMPREF1058_RS17955 0.50 -2.1 292,724 - HMPREF1058_RS17955 0.51 -1.7 292,787 + HMPREF1058_RS17955 0.56 -2.0 292,787 + HMPREF1058_RS17955 0.56 -0.3 292,787 + HMPREF1058_RS17955 0.56 -2.1 292,787 + HMPREF1058_RS17955 0.56 +0.5 292,788 - HMPREF1058_RS17955 0.56 -1.0 292,943 - HMPREF1058_RS17955 0.68 -2.3 292,986 + HMPREF1058_RS17955 0.71 -2.0
Or see this region's nucleotide sequence