Experiment: Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS16075 and HMPREF1058_RS16070 are separated by 4 nucleotides HMPREF1058_RS16070 and HMPREF1058_RS16065 are separated by 2 nucleotides
HMPREF1058_RS16075: HMPREF1058_RS16075 - hypothetical protein, at 766,300 to 767,286
_RS16075
HMPREF1058_RS16070: HMPREF1058_RS16070 - helix-turn-helix transcriptional regulator, at 767,291 to 767,578
_RS16070
HMPREF1058_RS16065: HMPREF1058_RS16065 - DUF1016 family protein, at 767,581 to 768,639
_RS16065
Position (kb) 767
768 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 766.351 kb on + strand at 766.351 kb on + strand at 766.351 kb on + strand at 766.351 kb on + strand at 766.352 kb on - strand at 766.377 kb on + strand at 766.378 kb on - strand at 766.378 kb on - strand at 766.378 kb on - strand at 766.446 kb on - strand, within HMPREF1058_RS16075 at 766.526 kb on - strand, within HMPREF1058_RS16075 at 766.665 kb on + strand, within HMPREF1058_RS16075 at 766.666 kb on - strand, within HMPREF1058_RS16075 at 766.676 kb on + strand, within HMPREF1058_RS16075 at 766.811 kb on - strand, within HMPREF1058_RS16075 at 766.960 kb on - strand, within HMPREF1058_RS16075 at 767.043 kb on - strand, within HMPREF1058_RS16075 at 767.043 kb on - strand, within HMPREF1058_RS16075 at 767.048 kb on + strand, within HMPREF1058_RS16075 at 767.049 kb on - strand, within HMPREF1058_RS16075 at 767.101 kb on + strand, within HMPREF1058_RS16075 at 767.131 kb on + strand, within HMPREF1058_RS16075 at 767.159 kb on - strand, within HMPREF1058_RS16075 at 767.195 kb on + strand at 767.195 kb on + strand at 767.196 kb on - strand at 767.422 kb on - strand, within HMPREF1058_RS16070 at 767.453 kb on - strand, within HMPREF1058_RS16070 at 767.498 kb on + strand, within HMPREF1058_RS16070 at 767.498 kb on + strand, within HMPREF1058_RS16070 at 767.508 kb on - strand, within HMPREF1058_RS16070 at 767.563 kb on + strand at 767.573 kb on + strand at 767.582 kb on + strand at 767.583 kb on - strand at 767.702 kb on + strand, within HMPREF1058_RS16065 at 767.713 kb on + strand, within HMPREF1058_RS16065 at 767.713 kb on + strand, within HMPREF1058_RS16065 at 767.737 kb on + strand, within HMPREF1058_RS16065 at 767.882 kb on + strand, within HMPREF1058_RS16065 at 767.883 kb on - strand, within HMPREF1058_RS16065 at 767.924 kb on - strand, within HMPREF1058_RS16065 at 767.931 kb on - strand, within HMPREF1058_RS16065 at 768.048 kb on + strand, within HMPREF1058_RS16065 at 768.188 kb on - strand, within HMPREF1058_RS16065 at 768.231 kb on - strand, within HMPREF1058_RS16065 at 768.336 kb on + strand, within HMPREF1058_RS16065 at 768.336 kb on + strand, within HMPREF1058_RS16065 at 768.425 kb on + strand, within HMPREF1058_RS16065 at 768.465 kb on + strand, within HMPREF1058_RS16065 at 768.515 kb on + strand, within HMPREF1058_RS16065 at 768.555 kb on + strand at 768.576 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml (C) remove 766,351 + +0.2 766,351 + -0.1 766,351 + -3.2 766,351 + -1.0 766,352 - -0.5 766,377 + -0.0 766,378 - -0.2 766,378 - +0.8 766,378 - -0.9 766,446 - HMPREF1058_RS16075 0.15 -1.5 766,526 - HMPREF1058_RS16075 0.23 +0.0 766,665 + HMPREF1058_RS16075 0.37 +0.7 766,666 - HMPREF1058_RS16075 0.37 -0.6 766,676 + HMPREF1058_RS16075 0.38 -0.8 766,811 - HMPREF1058_RS16075 0.52 +0.0 766,960 - HMPREF1058_RS16075 0.67 -0.6 767,043 - HMPREF1058_RS16075 0.75 -0.1 767,043 - HMPREF1058_RS16075 0.75 -2.1 767,048 + HMPREF1058_RS16075 0.76 +0.6 767,049 - HMPREF1058_RS16075 0.76 -0.1 767,101 + HMPREF1058_RS16075 0.81 -0.2 767,131 + HMPREF1058_RS16075 0.84 -2.3 767,159 - HMPREF1058_RS16075 0.87 -1.1 767,195 + +0.1 767,195 + -0.3 767,196 - -0.1 767,422 - HMPREF1058_RS16070 0.45 -3.3 767,453 - HMPREF1058_RS16070 0.56 -1.9 767,498 + HMPREF1058_RS16070 0.72 -1.8 767,498 + HMPREF1058_RS16070 0.72 -1.9 767,508 - HMPREF1058_RS16070 0.75 -2.5 767,563 + -1.9 767,573 + -2.9 767,582 + -2.5 767,583 - -3.2 767,702 + HMPREF1058_RS16065 0.11 -2.5 767,713 + HMPREF1058_RS16065 0.12 -1.1 767,713 + HMPREF1058_RS16065 0.12 -0.2 767,737 + HMPREF1058_RS16065 0.15 -1.4 767,882 + HMPREF1058_RS16065 0.28 -1.7 767,883 - HMPREF1058_RS16065 0.29 -1.2 767,924 - HMPREF1058_RS16065 0.32 +0.1 767,931 - HMPREF1058_RS16065 0.33 -0.4 768,048 + HMPREF1058_RS16065 0.44 +0.1 768,188 - HMPREF1058_RS16065 0.57 +0.6 768,231 - HMPREF1058_RS16065 0.61 -1.1 768,336 + HMPREF1058_RS16065 0.71 -1.0 768,336 + HMPREF1058_RS16065 0.71 -3.2 768,425 + HMPREF1058_RS16065 0.80 -2.6 768,465 + HMPREF1058_RS16065 0.83 -0.5 768,515 + HMPREF1058_RS16065 0.88 -2.0 768,555 + -2.6 768,576 - -1.1
Or see this region's nucleotide sequence