Experiment: Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS15385 and HMPREF1058_RS15380 are separated by 39 nucleotides HMPREF1058_RS15380 and HMPREF1058_RS15375 are separated by 13 nucleotides HMPREF1058_RS15375 and HMPREF1058_RS15370 are separated by 193 nucleotides
HMPREF1058_RS15385: HMPREF1058_RS15385 - metallophosphoesterase, at 933,927 to 935,087
_RS15385
HMPREF1058_RS15380: HMPREF1058_RS15380 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 935,127 to 935,885
_RS15380
HMPREF1058_RS15375: HMPREF1058_RS15375 - DUF4369 domain-containing protein, at 935,899 to 936,597
_RS15375
HMPREF1058_RS15370: HMPREF1058_RS15370 - S46 family peptidase, at 936,791 to 938,956
_RS15370
Position (kb) 935
936
937 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 934.973 kb on - strand at 934.973 kb on - strand at 935.100 kb on - strand at 935.137 kb on + strand at 935.139 kb on + strand at 935.139 kb on + strand at 935.146 kb on + strand at 935.147 kb on - strand at 935.182 kb on + strand at 935.196 kb on - strand at 935.196 kb on - strand at 935.196 kb on - strand at 935.196 kb on - strand at 935.203 kb on + strand, within HMPREF1058_RS15380 at 935.203 kb on + strand, within HMPREF1058_RS15380 at 935.204 kb on - strand, within HMPREF1058_RS15380 at 935.204 kb on - strand, within HMPREF1058_RS15380 at 935.204 kb on - strand, within HMPREF1058_RS15380 at 935.207 kb on + strand, within HMPREF1058_RS15380 at 935.207 kb on + strand, within HMPREF1058_RS15380 at 935.287 kb on - strand, within HMPREF1058_RS15380 at 935.287 kb on - strand, within HMPREF1058_RS15380 at 935.293 kb on + strand, within HMPREF1058_RS15380 at 935.297 kb on + strand, within HMPREF1058_RS15380 at 935.315 kb on - strand, within HMPREF1058_RS15380 at 935.346 kb on + strand, within HMPREF1058_RS15380 at 935.487 kb on - strand, within HMPREF1058_RS15380 at 935.488 kb on + strand, within HMPREF1058_RS15380 at 935.489 kb on - strand, within HMPREF1058_RS15380 at 935.489 kb on - strand, within HMPREF1058_RS15380 at 935.499 kb on - strand, within HMPREF1058_RS15380 at 935.530 kb on + strand, within HMPREF1058_RS15380 at 935.576 kb on - strand, within HMPREF1058_RS15380 at 935.621 kb on + strand, within HMPREF1058_RS15380 at 935.679 kb on - strand, within HMPREF1058_RS15380 at 935.679 kb on - strand, within HMPREF1058_RS15380 at 935.694 kb on - strand, within HMPREF1058_RS15380 at 935.697 kb on - strand, within HMPREF1058_RS15380 at 935.735 kb on + strand, within HMPREF1058_RS15380 at 935.749 kb on + strand, within HMPREF1058_RS15380 at 935.749 kb on + strand, within HMPREF1058_RS15380 at 935.750 kb on - strand, within HMPREF1058_RS15380 at 935.750 kb on - strand, within HMPREF1058_RS15380 at 935.753 kb on + strand at 935.754 kb on - strand, within HMPREF1058_RS15380 at 935.754 kb on - strand, within HMPREF1058_RS15380 at 935.883 kb on + strand at 935.901 kb on - strand at 936.074 kb on - strand, within HMPREF1058_RS15375 at 936.295 kb on + strand, within HMPREF1058_RS15375 at 936.296 kb on - strand, within HMPREF1058_RS15375 at 936.530 kb on - strand at 936.715 kb on + strand at 936.760 kb on - strand at 936.760 kb on - strand at 936.862 kb on + strand at 936.924 kb on + strand at 937.078 kb on + strand, within HMPREF1058_RS15370 at 937.078 kb on + strand, within HMPREF1058_RS15370 at 937.079 kb on - strand, within HMPREF1058_RS15370 at 937.079 kb on - strand, within HMPREF1058_RS15370 at 937.195 kb on + strand, within HMPREF1058_RS15370 at 937.196 kb on - strand, within HMPREF1058_RS15370 at 937.200 kb on + strand, within HMPREF1058_RS15370 at 937.201 kb on - strand, within HMPREF1058_RS15370 at 937.340 kb on + strand, within HMPREF1058_RS15370 at 937.494 kb on - strand, within HMPREF1058_RS15370 at 937.523 kb on + strand, within HMPREF1058_RS15370 at 937.525 kb on + strand, within HMPREF1058_RS15370
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml (C) remove 934,973 - -2.1 934,973 - +0.0 935,100 - -3.3 935,137 + -1.7 935,139 + -1.4 935,139 + -1.1 935,146 + -1.6 935,147 - -2.9 935,182 + -1.1 935,196 - -0.7 935,196 - -1.5 935,196 - -0.2 935,196 - -2.4 935,203 + HMPREF1058_RS15380 0.10 -0.6 935,203 + HMPREF1058_RS15380 0.10 -0.5 935,204 - HMPREF1058_RS15380 0.10 -2.8 935,204 - HMPREF1058_RS15380 0.10 -1.5 935,204 - HMPREF1058_RS15380 0.10 -1.6 935,207 + HMPREF1058_RS15380 0.11 -2.0 935,207 + HMPREF1058_RS15380 0.11 -0.9 935,287 - HMPREF1058_RS15380 0.21 +0.3 935,287 - HMPREF1058_RS15380 0.21 +1.8 935,293 + HMPREF1058_RS15380 0.22 -1.5 935,297 + HMPREF1058_RS15380 0.22 -0.5 935,315 - HMPREF1058_RS15380 0.25 -2.8 935,346 + HMPREF1058_RS15380 0.29 +2.8 935,487 - HMPREF1058_RS15380 0.47 +1.3 935,488 + HMPREF1058_RS15380 0.48 -1.6 935,489 - HMPREF1058_RS15380 0.48 -0.5 935,489 - HMPREF1058_RS15380 0.48 -0.7 935,499 - HMPREF1058_RS15380 0.49 -0.8 935,530 + HMPREF1058_RS15380 0.53 -1.3 935,576 - HMPREF1058_RS15380 0.59 +0.6 935,621 + HMPREF1058_RS15380 0.65 -1.1 935,679 - HMPREF1058_RS15380 0.73 +2.0 935,679 - HMPREF1058_RS15380 0.73 -1.9 935,694 - HMPREF1058_RS15380 0.75 -1.7 935,697 - HMPREF1058_RS15380 0.75 -1.7 935,735 + HMPREF1058_RS15380 0.80 -1.4 935,749 + HMPREF1058_RS15380 0.82 -2.5 935,749 + HMPREF1058_RS15380 0.82 -2.3 935,750 - HMPREF1058_RS15380 0.82 -1.8 935,750 - HMPREF1058_RS15380 0.82 +0.5 935,753 + +2.3 935,754 - HMPREF1058_RS15380 0.83 +1.3 935,754 - HMPREF1058_RS15380 0.83 -2.9 935,883 + -2.1 935,901 - +2.3 936,074 - HMPREF1058_RS15375 0.25 -1.7 936,295 + HMPREF1058_RS15375 0.57 -1.4 936,296 - HMPREF1058_RS15375 0.57 -0.8 936,530 - -0.5 936,715 + -1.5 936,760 - +0.1 936,760 - -1.1 936,862 + +0.8 936,924 + -0.1 937,078 + HMPREF1058_RS15370 0.13 +1.9 937,078 + HMPREF1058_RS15370 0.13 +0.9 937,079 - HMPREF1058_RS15370 0.13 -0.6 937,079 - HMPREF1058_RS15370 0.13 -1.2 937,195 + HMPREF1058_RS15370 0.19 -0.2 937,196 - HMPREF1058_RS15370 0.19 -1.2 937,200 + HMPREF1058_RS15370 0.19 +0.1 937,201 - HMPREF1058_RS15370 0.19 +0.2 937,340 + HMPREF1058_RS15370 0.25 +0.4 937,494 - HMPREF1058_RS15370 0.32 +0.2 937,523 + HMPREF1058_RS15370 0.34 -1.4 937,525 + HMPREF1058_RS15370 0.34 -0.9
Or see this region's nucleotide sequence