Experiment: Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS12890 and HMPREF1058_RS12885 overlap by 38 nucleotides HMPREF1058_RS12885 and HMPREF1058_RS12880 are separated by 4 nucleotides
HMPREF1058_RS12890: HMPREF1058_RS12890 - tetraacyldisaccharide 4'-kinase, at 11,092 to 12,192
_RS12890
HMPREF1058_RS12885: HMPREF1058_RS12885 - purine-nucleoside phosphorylase, at 12,155 to 12,964
_RS12885
HMPREF1058_RS12880: HMPREF1058_RS12880 - thiamine-phosphate kinase, at 12,969 to 14,009
_RS12880
Position (kb) 12
13 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 12.226 kb on + strand at 12.228 kb on + strand at 12.253 kb on - strand, within HMPREF1058_RS12885 at 12.275 kb on + strand, within HMPREF1058_RS12885 at 12.301 kb on + strand, within HMPREF1058_RS12885 at 12.331 kb on + strand, within HMPREF1058_RS12885 at 12.357 kb on + strand, within HMPREF1058_RS12885 at 12.379 kb on + strand, within HMPREF1058_RS12885 at 12.497 kb on - strand, within HMPREF1058_RS12885 at 12.544 kb on + strand, within HMPREF1058_RS12885 at 12.545 kb on - strand, within HMPREF1058_RS12885 at 12.693 kb on + strand, within HMPREF1058_RS12885 at 12.695 kb on + strand, within HMPREF1058_RS12885 at 12.696 kb on - strand, within HMPREF1058_RS12885 at 12.696 kb on - strand, within HMPREF1058_RS12885 at 12.698 kb on - strand, within HMPREF1058_RS12885 at 12.775 kb on + strand, within HMPREF1058_RS12885 at 12.775 kb on + strand, within HMPREF1058_RS12885 at 12.775 kb on + strand, within HMPREF1058_RS12885 at 12.938 kb on - strand at 13.022 kb on + strand at 13.117 kb on + strand, within HMPREF1058_RS12880 at 13.150 kb on + strand, within HMPREF1058_RS12880 at 13.169 kb on + strand, within HMPREF1058_RS12880 at 13.193 kb on + strand, within HMPREF1058_RS12880 at 13.207 kb on + strand, within HMPREF1058_RS12880 at 13.224 kb on + strand, within HMPREF1058_RS12880 at 13.308 kb on + strand, within HMPREF1058_RS12880 at 13.336 kb on + strand, within HMPREF1058_RS12880 at 13.337 kb on - strand, within HMPREF1058_RS12880 at 13.346 kb on - strand, within HMPREF1058_RS12880 at 13.346 kb on - strand, within HMPREF1058_RS12880 at 13.349 kb on + strand, within HMPREF1058_RS12880 at 13.400 kb on + strand, within HMPREF1058_RS12880 at 13.401 kb on - strand, within HMPREF1058_RS12880 at 13.409 kb on - strand, within HMPREF1058_RS12880 at 13.432 kb on + strand, within HMPREF1058_RS12880 at 13.457 kb on + strand, within HMPREF1058_RS12880 at 13.497 kb on + strand, within HMPREF1058_RS12880 at 13.498 kb on - strand, within HMPREF1058_RS12880 at 13.498 kb on - strand, within HMPREF1058_RS12880 at 13.500 kb on - strand, within HMPREF1058_RS12880 at 13.583 kb on + strand, within HMPREF1058_RS12880 at 13.706 kb on + strand, within HMPREF1058_RS12880 at 13.707 kb on - strand, within HMPREF1058_RS12880 at 13.707 kb on - strand, within HMPREF1058_RS12880 at 13.708 kb on + strand, within HMPREF1058_RS12880 at 13.708 kb on + strand, within HMPREF1058_RS12880 at 13.708 kb on + strand, within HMPREF1058_RS12880 at 13.709 kb on - strand, within HMPREF1058_RS12880 at 13.709 kb on - strand, within HMPREF1058_RS12880 at 13.709 kb on - strand, within HMPREF1058_RS12880 at 13.709 kb on - strand, within HMPREF1058_RS12880 at 13.797 kb on - strand, within HMPREF1058_RS12880 at 13.819 kb on + strand, within HMPREF1058_RS12880 at 13.819 kb on + strand, within HMPREF1058_RS12880 at 13.844 kb on - strand, within HMPREF1058_RS12880 at 13.846 kb on + strand, within HMPREF1058_RS12880 at 13.850 kb on + strand, within HMPREF1058_RS12880 at 13.851 kb on - strand, within HMPREF1058_RS12880
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml (C) remove 12,226 + -1.5 12,228 + -1.4 12,253 - HMPREF1058_RS12885 0.12 -0.9 12,275 + HMPREF1058_RS12885 0.15 -1.1 12,301 + HMPREF1058_RS12885 0.18 +0.2 12,331 + HMPREF1058_RS12885 0.22 -2.0 12,357 + HMPREF1058_RS12885 0.25 -0.5 12,379 + HMPREF1058_RS12885 0.28 -2.5 12,497 - HMPREF1058_RS12885 0.42 -1.7 12,544 + HMPREF1058_RS12885 0.48 -0.6 12,545 - HMPREF1058_RS12885 0.48 -0.4 12,693 + HMPREF1058_RS12885 0.66 -1.0 12,695 + HMPREF1058_RS12885 0.67 -2.8 12,696 - HMPREF1058_RS12885 0.67 +0.8 12,696 - HMPREF1058_RS12885 0.67 -1.1 12,698 - HMPREF1058_RS12885 0.67 -1.2 12,775 + HMPREF1058_RS12885 0.77 -1.8 12,775 + HMPREF1058_RS12885 0.77 +1.4 12,775 + HMPREF1058_RS12885 0.77 -1.5 12,938 - -0.8 13,022 + -1.6 13,117 + HMPREF1058_RS12880 0.14 -1.1 13,150 + HMPREF1058_RS12880 0.17 +0.8 13,169 + HMPREF1058_RS12880 0.19 -0.3 13,193 + HMPREF1058_RS12880 0.22 +0.5 13,207 + HMPREF1058_RS12880 0.23 +0.6 13,224 + HMPREF1058_RS12880 0.24 -0.9 13,308 + HMPREF1058_RS12880 0.33 +1.4 13,336 + HMPREF1058_RS12880 0.35 -0.6 13,337 - HMPREF1058_RS12880 0.35 +3.4 13,346 - HMPREF1058_RS12880 0.36 +0.1 13,346 - HMPREF1058_RS12880 0.36 +0.4 13,349 + HMPREF1058_RS12880 0.37 +0.5 13,400 + HMPREF1058_RS12880 0.41 -2.2 13,401 - HMPREF1058_RS12880 0.41 -0.2 13,409 - HMPREF1058_RS12880 0.42 -2.1 13,432 + HMPREF1058_RS12880 0.44 -0.2 13,457 + HMPREF1058_RS12880 0.47 -0.1 13,497 + HMPREF1058_RS12880 0.51 -1.2 13,498 - HMPREF1058_RS12880 0.51 +1.3 13,498 - HMPREF1058_RS12880 0.51 +0.1 13,500 - HMPREF1058_RS12880 0.51 +0.5 13,583 + HMPREF1058_RS12880 0.59 -0.4 13,706 + HMPREF1058_RS12880 0.71 -0.4 13,707 - HMPREF1058_RS12880 0.71 -0.6 13,707 - HMPREF1058_RS12880 0.71 -0.0 13,708 + HMPREF1058_RS12880 0.71 +0.5 13,708 + HMPREF1058_RS12880 0.71 -0.1 13,708 + HMPREF1058_RS12880 0.71 +0.1 13,709 - HMPREF1058_RS12880 0.71 -0.2 13,709 - HMPREF1058_RS12880 0.71 -1.7 13,709 - HMPREF1058_RS12880 0.71 +1.4 13,709 - HMPREF1058_RS12880 0.71 -1.5 13,797 - HMPREF1058_RS12880 0.80 -1.8 13,819 + HMPREF1058_RS12880 0.82 -0.1 13,819 + HMPREF1058_RS12880 0.82 +1.4 13,844 - HMPREF1058_RS12880 0.84 -0.8 13,846 + HMPREF1058_RS12880 0.84 -2.3 13,850 + HMPREF1058_RS12880 0.85 -1.6 13,851 - HMPREF1058_RS12880 0.85 -1.5
Or see this region's nucleotide sequence