Experiment: Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS12510 and HMPREF1058_RS0119590 are separated by 348 nucleotides HMPREF1058_RS0119590 and HMPREF1058_RS12505 are separated by 128 nucleotides HMPREF1058_RS12505 and HMPREF1058_RS12500 are separated by 10 nucleotides HMPREF1058_RS12500 and HMPREF1058_RS12495 are separated by 36 nucleotides
HMPREF1058_RS12510: HMPREF1058_RS12510 - glycyl-radical enzyme activating protein, at 90,952 to 91,860
_RS12510
HMPREF1058_RS0119590: HMPREF1058_RS0119590 - Xaa-Pro aminopeptidase, at 92,209 to 92,433
_RS0119590
HMPREF1058_RS12505: HMPREF1058_RS12505 - RNA polymerase factor sigma-54, at 92,562 to 94,031
_RS12505
HMPREF1058_RS12500: HMPREF1058_RS12500 - phosphatase PAP2 family protein, at 94,042 to 94,698
_RS12500
HMPREF1058_RS12495: HMPREF1058_RS12495 - glycine cleavage system protein GcvH, at 94,735 to 95,115
_RS12495
Position (kb) 92
93
94
95 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 91.597 kb on + strand, within HMPREF1058_RS12510 at 91.597 kb on + strand, within HMPREF1058_RS12510 at 91.597 kb on + strand, within HMPREF1058_RS12510 at 91.598 kb on - strand, within HMPREF1058_RS12510 at 91.598 kb on - strand, within HMPREF1058_RS12510 at 91.605 kb on + strand, within HMPREF1058_RS12510 at 91.647 kb on - strand at 91.704 kb on - strand, within HMPREF1058_RS12510 at 91.719 kb on + strand, within HMPREF1058_RS12510 at 91.721 kb on + strand, within HMPREF1058_RS12510 at 91.721 kb on + strand, within HMPREF1058_RS12510 at 91.752 kb on + strand, within HMPREF1058_RS12510 at 91.756 kb on + strand, within HMPREF1058_RS12510 at 91.756 kb on + strand, within HMPREF1058_RS12510 at 91.757 kb on - strand, within HMPREF1058_RS12510 at 91.757 kb on - strand, within HMPREF1058_RS12510 at 91.773 kb on + strand at 91.774 kb on - strand at 91.800 kb on - strand at 91.814 kb on + strand at 91.815 kb on - strand at 91.862 kb on + strand at 91.862 kb on + strand at 91.862 kb on + strand at 91.863 kb on - strand at 91.863 kb on - strand at 91.863 kb on - strand at 91.863 kb on - strand at 91.864 kb on + strand at 91.865 kb on - strand at 91.865 kb on - strand at 91.865 kb on - strand at 91.883 kb on - strand at 91.967 kb on - strand at 92.029 kb on - strand at 92.029 kb on - strand at 92.035 kb on - strand at 92.036 kb on + strand at 92.036 kb on + strand at 92.037 kb on - strand at 92.040 kb on + strand at 92.051 kb on - strand at 92.052 kb on + strand at 92.053 kb on - strand at 92.053 kb on - strand at 92.055 kb on + strand at 92.101 kb on - strand at 92.247 kb on + strand, within HMPREF1058_RS0119590 at 92.247 kb on + strand, within HMPREF1058_RS0119590 at 92.248 kb on - strand, within HMPREF1058_RS0119590 at 92.248 kb on - strand, within HMPREF1058_RS0119590 at 92.248 kb on - strand, within HMPREF1058_RS0119590 at 92.248 kb on - strand, within HMPREF1058_RS0119590 at 92.252 kb on + strand, within HMPREF1058_RS0119590 at 92.253 kb on - strand, within HMPREF1058_RS0119590 at 92.253 kb on - strand, within HMPREF1058_RS0119590 at 92.298 kb on - strand at 92.307 kb on + strand, within HMPREF1058_RS0119590 at 92.331 kb on + strand at 92.331 kb on + strand, within HMPREF1058_RS0119590 at 92.331 kb on + strand, within HMPREF1058_RS0119590 at 92.331 kb on + strand, within HMPREF1058_RS0119590 at 92.398 kb on - strand, within HMPREF1058_RS0119590 at 92.398 kb on - strand, within HMPREF1058_RS0119590 at 92.414 kb on + strand at 92.415 kb on - strand at 92.433 kb on + strand at 92.452 kb on + strand at 92.453 kb on - strand at 92.508 kb on + strand at 92.511 kb on + strand at 92.608 kb on + strand at 92.861 kb on + strand, within HMPREF1058_RS12505 at 92.957 kb on + strand, within HMPREF1058_RS12505 at 92.957 kb on + strand, within HMPREF1058_RS12505 at 93.073 kb on - strand, within HMPREF1058_RS12505 at 93.074 kb on + strand, within HMPREF1058_RS12505 at 93.169 kb on + strand, within HMPREF1058_RS12505 at 93.175 kb on + strand, within HMPREF1058_RS12505 at 93.284 kb on + strand, within HMPREF1058_RS12505 at 93.414 kb on + strand, within HMPREF1058_RS12505 at 93.431 kb on + strand, within HMPREF1058_RS12505 at 93.453 kb on - strand, within HMPREF1058_RS12505 at 93.560 kb on - strand, within HMPREF1058_RS12505 at 93.646 kb on + strand, within HMPREF1058_RS12505 at 93.646 kb on + strand, within HMPREF1058_RS12505 at 93.647 kb on - strand, within HMPREF1058_RS12505 at 93.775 kb on + strand, within HMPREF1058_RS12505 at 93.792 kb on - strand, within HMPREF1058_RS12505 at 94.029 kb on + strand at 94.034 kb on + strand at 94.040 kb on - strand at 94.040 kb on - strand at 94.077 kb on - strand at 94.113 kb on + strand, within HMPREF1058_RS12500 at 94.114 kb on - strand, within HMPREF1058_RS12500 at 94.140 kb on + strand, within HMPREF1058_RS12500 at 94.140 kb on + strand, within HMPREF1058_RS12500 at 94.184 kb on - strand, within HMPREF1058_RS12500 at 94.191 kb on + strand, within HMPREF1058_RS12500 at 94.217 kb on + strand, within HMPREF1058_RS12500 at 94.218 kb on - strand, within HMPREF1058_RS12500 at 94.229 kb on + strand, within HMPREF1058_RS12500 at 94.230 kb on - strand, within HMPREF1058_RS12500 at 94.271 kb on - strand, within HMPREF1058_RS12500 at 94.339 kb on + strand, within HMPREF1058_RS12500 at 94.350 kb on + strand, within HMPREF1058_RS12500 at 94.386 kb on + strand, within HMPREF1058_RS12500 at 94.387 kb on - strand, within HMPREF1058_RS12500 at 94.408 kb on - strand, within HMPREF1058_RS12500 at 94.537 kb on - strand, within HMPREF1058_RS12500 at 94.617 kb on - strand, within HMPREF1058_RS12500 at 94.627 kb on - strand, within HMPREF1058_RS12500 at 94.627 kb on - strand, within HMPREF1058_RS12500 at 94.631 kb on + strand, within HMPREF1058_RS12500 at 94.632 kb on - strand, within HMPREF1058_RS12500 at 94.634 kb on + strand at 94.754 kb on + strand at 94.787 kb on + strand, within HMPREF1058_RS12495 at 94.799 kb on + strand at 94.799 kb on + strand, within HMPREF1058_RS12495 at 94.799 kb on + strand, within HMPREF1058_RS12495 at 94.799 kb on + strand, within HMPREF1058_RS12495 at 94.804 kb on + strand, within HMPREF1058_RS12495 at 94.856 kb on + strand, within HMPREF1058_RS12495
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml (C) remove 91,597 + HMPREF1058_RS12510 0.71 -2.3 91,597 + HMPREF1058_RS12510 0.71 -0.5 91,597 + HMPREF1058_RS12510 0.71 -1.3 91,598 - HMPREF1058_RS12510 0.71 +1.2 91,598 - HMPREF1058_RS12510 0.71 +0.3 91,605 + HMPREF1058_RS12510 0.72 -0.1 91,647 - +1.4 91,704 - HMPREF1058_RS12510 0.83 -1.1 91,719 + HMPREF1058_RS12510 0.84 -0.4 91,721 + HMPREF1058_RS12510 0.85 -0.0 91,721 + HMPREF1058_RS12510 0.85 +0.1 91,752 + HMPREF1058_RS12510 0.88 -0.6 91,756 + HMPREF1058_RS12510 0.88 -0.3 91,756 + HMPREF1058_RS12510 0.88 -0.0 91,757 - HMPREF1058_RS12510 0.89 -0.9 91,757 - HMPREF1058_RS12510 0.89 +0.3 91,773 + +0.5 91,774 - -1.4 91,800 - +2.7 91,814 + -0.9 91,815 - +4.3 91,862 + +0.3 91,862 + +0.3 91,862 + +0.7 91,863 - -1.3 91,863 - -0.3 91,863 - -1.4 91,863 - +0.3 91,864 + +0.6 91,865 - -1.2 91,865 - +1.5 91,865 - +0.7 91,883 - -0.3 91,967 - -1.3 92,029 - +1.4 92,029 - +1.7 92,035 - -0.1 92,036 + -1.1 92,036 + -0.8 92,037 - -0.3 92,040 + +0.2 92,051 - +0.4 92,052 + +0.4 92,053 - -0.5 92,053 - +0.7 92,055 + -0.1 92,101 - +1.4 92,247 + HMPREF1058_RS0119590 0.17 +0.3 92,247 + HMPREF1058_RS0119590 0.17 +0.2 92,248 - HMPREF1058_RS0119590 0.17 +0.1 92,248 - HMPREF1058_RS0119590 0.17 +3.2 92,248 - HMPREF1058_RS0119590 0.17 +0.4 92,248 - HMPREF1058_RS0119590 0.17 -0.2 92,252 + HMPREF1058_RS0119590 0.19 +0.1 92,253 - HMPREF1058_RS0119590 0.20 -0.7 92,253 - HMPREF1058_RS0119590 0.20 -1.6 92,298 - +0.4 92,307 + HMPREF1058_RS0119590 0.44 -1.5 92,331 + +2.4 92,331 + HMPREF1058_RS0119590 0.54 -0.7 92,331 + HMPREF1058_RS0119590 0.54 +3.9 92,331 + HMPREF1058_RS0119590 0.54 +2.4 92,398 - HMPREF1058_RS0119590 0.84 +0.9 92,398 - HMPREF1058_RS0119590 0.84 -0.5 92,414 + -2.6 92,415 - -0.3 92,433 + -1.8 92,452 + +0.0 92,453 - +0.1 92,508 + -0.0 92,511 + +0.3 92,608 + -0.5 92,861 + HMPREF1058_RS12505 0.20 -1.9 92,957 + HMPREF1058_RS12505 0.27 -0.6 92,957 + HMPREF1058_RS12505 0.27 -1.9 93,073 - HMPREF1058_RS12505 0.35 +0.6 93,074 + HMPREF1058_RS12505 0.35 -0.2 93,169 + HMPREF1058_RS12505 0.41 -2.1 93,175 + HMPREF1058_RS12505 0.42 -0.4 93,284 + HMPREF1058_RS12505 0.49 -0.4 93,414 + HMPREF1058_RS12505 0.58 -1.7 93,431 + HMPREF1058_RS12505 0.59 +0.1 93,453 - HMPREF1058_RS12505 0.61 +0.4 93,560 - HMPREF1058_RS12505 0.68 -0.6 93,646 + HMPREF1058_RS12505 0.74 -2.1 93,646 + HMPREF1058_RS12505 0.74 +0.1 93,647 - HMPREF1058_RS12505 0.74 -0.4 93,775 + HMPREF1058_RS12505 0.83 -3.2 93,792 - HMPREF1058_RS12505 0.84 +0.1 94,029 + -1.1 94,034 + +0.4 94,040 - -0.3 94,040 - +0.5 94,077 - -0.9 94,113 + HMPREF1058_RS12500 0.11 -1.1 94,114 - HMPREF1058_RS12500 0.11 +0.6 94,140 + HMPREF1058_RS12500 0.15 -0.6 94,140 + HMPREF1058_RS12500 0.15 -0.0 94,184 - HMPREF1058_RS12500 0.22 -0.1 94,191 + HMPREF1058_RS12500 0.23 -0.8 94,217 + HMPREF1058_RS12500 0.27 -1.4 94,218 - HMPREF1058_RS12500 0.27 +2.7 94,229 + HMPREF1058_RS12500 0.28 -0.6 94,230 - HMPREF1058_RS12500 0.29 -0.4 94,271 - HMPREF1058_RS12500 0.35 -1.6 94,339 + HMPREF1058_RS12500 0.45 -0.2 94,350 + HMPREF1058_RS12500 0.47 -0.9 94,386 + HMPREF1058_RS12500 0.52 +0.5 94,387 - HMPREF1058_RS12500 0.53 +0.8 94,408 - HMPREF1058_RS12500 0.56 -0.3 94,537 - HMPREF1058_RS12500 0.75 -0.4 94,617 - HMPREF1058_RS12500 0.88 -1.2 94,627 - HMPREF1058_RS12500 0.89 -0.9 94,627 - HMPREF1058_RS12500 0.89 +1.0 94,631 + HMPREF1058_RS12500 0.90 -1.8 94,632 - HMPREF1058_RS12500 0.90 -0.5 94,634 + +0.4 94,754 + -0.5 94,787 + HMPREF1058_RS12495 0.14 -0.9 94,799 + +1.4 94,799 + HMPREF1058_RS12495 0.17 -1.2 94,799 + HMPREF1058_RS12495 0.17 -0.4 94,799 + HMPREF1058_RS12495 0.17 +0.3 94,804 + HMPREF1058_RS12495 0.18 -1.6 94,856 + HMPREF1058_RS12495 0.32 -0.3
Or see this region's nucleotide sequence