Experiment: Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS12110 and HMPREF1058_RS12105 are separated by 41 nucleotides HMPREF1058_RS12105 and HMPREF1058_RS12100 overlap by 4 nucleotides
HMPREF1058_RS12110: HMPREF1058_RS12110 - biosynthetic arginine decarboxylase, at 197,858 to 199,750
_RS12110
HMPREF1058_RS12105: HMPREF1058_RS12105 - shikimate kinase, at 199,792 to 200,319
_RS12105
HMPREF1058_RS12100: HMPREF1058_RS12100 - type I DNA topoisomerase, at 200,316 to 202,754
_RS12100
Position (kb) 199
200
201 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 198.809 kb on - strand, within HMPREF1058_RS12110 at 198.822 kb on + strand, within HMPREF1058_RS12110 at 198.837 kb on + strand, within HMPREF1058_RS12110 at 198.838 kb on - strand, within HMPREF1058_RS12110 at 199.010 kb on + strand at 199.011 kb on - strand, within HMPREF1058_RS12110 at 199.012 kb on + strand, within HMPREF1058_RS12110 at 199.168 kb on + strand, within HMPREF1058_RS12110 at 199.173 kb on - strand, within HMPREF1058_RS12110 at 199.178 kb on - strand, within HMPREF1058_RS12110 at 199.178 kb on - strand, within HMPREF1058_RS12110 at 199.308 kb on + strand, within HMPREF1058_RS12110 at 199.487 kb on - strand, within HMPREF1058_RS12110 at 199.488 kb on + strand, within HMPREF1058_RS12110 at 199.513 kb on + strand, within HMPREF1058_RS12110 at 199.537 kb on + strand, within HMPREF1058_RS12110 at 199.573 kb on + strand at 199.574 kb on - strand at 199.574 kb on - strand at 199.659 kb on - strand at 199.713 kb on + strand at 199.713 kb on + strand at 199.775 kb on + strand at 199.776 kb on - strand at 199.785 kb on + strand at 199.785 kb on + strand at 199.786 kb on - strand at 199.787 kb on + strand at 199.789 kb on + strand at 199.790 kb on - strand at 199.793 kb on + strand at 199.797 kb on + strand at 199.846 kb on - strand, within HMPREF1058_RS12105 at 200.049 kb on + strand, within HMPREF1058_RS12105 at 200.050 kb on - strand, within HMPREF1058_RS12105 at 200.051 kb on + strand, within HMPREF1058_RS12105 at 200.051 kb on + strand, within HMPREF1058_RS12105 at 200.052 kb on - strand, within HMPREF1058_RS12105 at 200.196 kb on + strand, within HMPREF1058_RS12105 at 200.269 kb on + strand at 200.294 kb on + strand at 200.294 kb on + strand at 200.295 kb on - strand at 200.299 kb on + strand at 200.302 kb on + strand at 200.310 kb on + strand at 200.310 kb on + strand at 200.310 kb on + strand at 200.343 kb on + strand at 200.442 kb on - strand at 200.558 kb on - strand at 200.643 kb on - strand, within HMPREF1058_RS12100 at 200.735 kb on - strand, within HMPREF1058_RS12100
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml (C) remove 198,809 - HMPREF1058_RS12110 0.50 -3.0 198,822 + HMPREF1058_RS12110 0.51 -4.5 198,837 + HMPREF1058_RS12110 0.52 -1.1 198,838 - HMPREF1058_RS12110 0.52 -2.7 199,010 + -0.2 199,011 - HMPREF1058_RS12110 0.61 -2.5 199,012 + HMPREF1058_RS12110 0.61 -3.2 199,168 + HMPREF1058_RS12110 0.69 -5.0 199,173 - HMPREF1058_RS12110 0.69 -3.3 199,178 - HMPREF1058_RS12110 0.70 -0.3 199,178 - HMPREF1058_RS12110 0.70 -1.8 199,308 + HMPREF1058_RS12110 0.77 -1.5 199,487 - HMPREF1058_RS12110 0.86 -3.5 199,488 + HMPREF1058_RS12110 0.86 -3.9 199,513 + HMPREF1058_RS12110 0.87 -3.8 199,537 + HMPREF1058_RS12110 0.89 -2.7 199,573 + -3.9 199,574 - -3.6 199,574 - -2.3 199,659 - -1.4 199,713 + -6.2 199,713 + -4.7 199,775 + -3.0 199,776 - +0.5 199,785 + -3.5 199,785 + -4.7 199,786 - -0.0 199,787 + -4.9 199,789 + -4.0 199,790 - +0.2 199,793 + -3.9 199,797 + -2.1 199,846 - HMPREF1058_RS12105 0.10 -3.0 200,049 + HMPREF1058_RS12105 0.49 -1.2 200,050 - HMPREF1058_RS12105 0.49 -5.2 200,051 + HMPREF1058_RS12105 0.49 -0.8 200,051 + HMPREF1058_RS12105 0.49 -2.2 200,052 - HMPREF1058_RS12105 0.49 -2.9 200,196 + HMPREF1058_RS12105 0.77 -1.3 200,269 + -3.8 200,294 + -3.8 200,294 + +0.1 200,295 - -3.3 200,299 + -1.8 200,302 + -0.8 200,310 + -6.6 200,310 + -2.4 200,310 + -3.5 200,343 + -1.3 200,442 - -0.3 200,558 - -1.9 200,643 - HMPREF1058_RS12100 0.13 +1.1 200,735 - HMPREF1058_RS12100 0.17 -1.1
Or see this region's nucleotide sequence