Experiment: Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS11930 and HMPREF1058_RS11925 are separated by 8 nucleotides HMPREF1058_RS11925 and HMPREF1058_RS11920 are separated by 16 nucleotides HMPREF1058_RS11920 and HMPREF1058_RS11915 are separated by 271 nucleotides
HMPREF1058_RS11930: HMPREF1058_RS11930 - CPBP family intramembrane metalloprotease, at 242,333 to 243,163
_RS11930
HMPREF1058_RS11925: HMPREF1058_RS11925 - DUF2975 domain-containing protein, at 243,172 to 243,801
_RS11925
HMPREF1058_RS11920: HMPREF1058_RS11920 - DUF2975 domain-containing protein, at 243,818 to 244,465
_RS11920
HMPREF1058_RS11915: HMPREF1058_RS11915 - helix-turn-helix transcriptional regulator, at 244,737 to 244,949
_RS11915
Position (kb) 243
244 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 242.329 kb on + strand at 242.329 kb on + strand at 242.348 kb on - strand at 242.355 kb on + strand at 242.355 kb on + strand at 242.467 kb on - strand, within HMPREF1058_RS11930 at 242.477 kb on - strand, within HMPREF1058_RS11930 at 242.545 kb on + strand, within HMPREF1058_RS11930 at 242.584 kb on - strand, within HMPREF1058_RS11930 at 242.874 kb on + strand, within HMPREF1058_RS11930 at 242.875 kb on - strand, within HMPREF1058_RS11930 at 242.916 kb on - strand, within HMPREF1058_RS11930 at 242.936 kb on - strand, within HMPREF1058_RS11930 at 242.961 kb on + strand, within HMPREF1058_RS11930 at 242.966 kb on - strand, within HMPREF1058_RS11930 at 242.993 kb on - strand, within HMPREF1058_RS11930 at 243.053 kb on + strand, within HMPREF1058_RS11930 at 243.096 kb on - strand at 243.096 kb on - strand at 243.096 kb on - strand at 243.161 kb on + strand at 243.161 kb on + strand at 243.162 kb on - strand at 243.165 kb on + strand at 243.165 kb on + strand at 243.166 kb on - strand at 243.166 kb on - strand at 243.166 kb on - strand at 243.168 kb on - strand at 243.229 kb on - strand at 243.229 kb on - strand at 243.232 kb on + strand at 243.232 kb on + strand at 243.233 kb on - strand at 243.372 kb on - strand, within HMPREF1058_RS11925 at 243.394 kb on + strand, within HMPREF1058_RS11925 at 243.409 kb on - strand, within HMPREF1058_RS11925 at 243.612 kb on + strand, within HMPREF1058_RS11925 at 243.853 kb on + strand at 243.856 kb on - strand at 243.931 kb on + strand, within HMPREF1058_RS11920 at 243.932 kb on - strand, within HMPREF1058_RS11920 at 243.932 kb on - strand, within HMPREF1058_RS11920 at 243.948 kb on + strand, within HMPREF1058_RS11920 at 243.949 kb on - strand, within HMPREF1058_RS11920 at 243.949 kb on - strand, within HMPREF1058_RS11920 at 243.950 kb on + strand, within HMPREF1058_RS11920 at 243.970 kb on + strand, within HMPREF1058_RS11920 at 243.970 kb on + strand, within HMPREF1058_RS11920 at 244.025 kb on - strand, within HMPREF1058_RS11920 at 244.071 kb on - strand, within HMPREF1058_RS11920 at 244.087 kb on - strand, within HMPREF1058_RS11920 at 244.215 kb on + strand, within HMPREF1058_RS11920 at 244.220 kb on - strand, within HMPREF1058_RS11920 at 244.220 kb on - strand, within HMPREF1058_RS11920 at 244.257 kb on - strand, within HMPREF1058_RS11920 at 244.257 kb on - strand, within HMPREF1058_RS11920 at 244.257 kb on - strand, within HMPREF1058_RS11920 at 244.285 kb on - strand at 244.358 kb on + strand, within HMPREF1058_RS11920 at 244.359 kb on - strand, within HMPREF1058_RS11920 at 244.544 kb on + strand at 244.556 kb on - strand at 244.569 kb on + strand at 244.607 kb on - strand at 244.651 kb on - strand at 244.661 kb on + strand at 244.661 kb on + strand at 244.746 kb on - strand at 244.762 kb on + strand, within HMPREF1058_RS11915
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml (C) remove 242,329 + -0.9 242,329 + +0.0 242,348 - -3.0 242,355 + -1.9 242,355 + +0.0 242,467 - HMPREF1058_RS11930 0.16 -1.4 242,477 - HMPREF1058_RS11930 0.17 -0.5 242,545 + HMPREF1058_RS11930 0.26 -1.3 242,584 - HMPREF1058_RS11930 0.30 -0.7 242,874 + HMPREF1058_RS11930 0.65 +0.1 242,875 - HMPREF1058_RS11930 0.65 -2.3 242,916 - HMPREF1058_RS11930 0.70 -2.0 242,936 - HMPREF1058_RS11930 0.73 +0.4 242,961 + HMPREF1058_RS11930 0.76 -0.4 242,966 - HMPREF1058_RS11930 0.76 +0.1 242,993 - HMPREF1058_RS11930 0.79 -2.3 243,053 + HMPREF1058_RS11930 0.87 +0.4 243,096 - +0.1 243,096 - +0.5 243,096 - -1.1 243,161 + -0.6 243,161 + -3.6 243,162 - -0.6 243,165 + -0.6 243,165 + -1.4 243,166 - -2.5 243,166 - -0.2 243,166 - +0.0 243,168 - -0.8 243,229 - -0.7 243,229 - -0.1 243,232 + -3.2 243,232 + +0.6 243,233 - -2.4 243,372 - HMPREF1058_RS11925 0.32 -1.2 243,394 + HMPREF1058_RS11925 0.35 -0.2 243,409 - HMPREF1058_RS11925 0.38 -1.0 243,612 + HMPREF1058_RS11925 0.70 -3.5 243,853 + -1.5 243,856 - -2.5 243,931 + HMPREF1058_RS11920 0.17 -0.9 243,932 - HMPREF1058_RS11920 0.18 -2.0 243,932 - HMPREF1058_RS11920 0.18 -1.7 243,948 + HMPREF1058_RS11920 0.20 -2.5 243,949 - HMPREF1058_RS11920 0.20 -0.9 243,949 - HMPREF1058_RS11920 0.20 -0.9 243,950 + HMPREF1058_RS11920 0.20 +0.4 243,970 + HMPREF1058_RS11920 0.23 +1.4 243,970 + HMPREF1058_RS11920 0.23 -2.2 244,025 - HMPREF1058_RS11920 0.32 +0.6 244,071 - HMPREF1058_RS11920 0.39 -0.8 244,087 - HMPREF1058_RS11920 0.42 -2.9 244,215 + HMPREF1058_RS11920 0.61 -1.8 244,220 - HMPREF1058_RS11920 0.62 -2.3 244,220 - HMPREF1058_RS11920 0.62 +0.1 244,257 - HMPREF1058_RS11920 0.68 -1.9 244,257 - HMPREF1058_RS11920 0.68 -3.4 244,257 - HMPREF1058_RS11920 0.68 -1.5 244,285 - +0.1 244,358 + HMPREF1058_RS11920 0.83 -2.2 244,359 - HMPREF1058_RS11920 0.83 -2.1 244,544 + -2.3 244,556 - -0.9 244,569 + -2.5 244,607 - -2.8 244,651 - -2.1 244,661 + -1.5 244,661 + -1.9 244,746 - -1.8 244,762 + HMPREF1058_RS11915 0.12 +0.4
Or see this region's nucleotide sequence