Experiment: Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS10125 and HMPREF1058_RS10120 overlap by 4 nucleotides HMPREF1058_RS10120 and HMPREF1058_RS10115 are separated by 254 nucleotides HMPREF1058_RS10115 and HMPREF1058_RS10110 are separated by 1 nucleotides HMPREF1058_RS10110 and HMPREF1058_RS10105 are separated by 172 nucleotides HMPREF1058_RS10105 and HMPREF1058_RS10100 are separated by 32 nucleotides
HMPREF1058_RS10125: HMPREF1058_RS10125 - AAA family ATPase, at 718,717 to 720,711
_RS10125
HMPREF1058_RS10120: HMPREF1058_RS10120 - hypothetical protein, at 720,708 to 720,995
_RS10120
HMPREF1058_RS10115: HMPREF1058_RS10115 - helix-turn-helix transcriptional regulator, at 721,250 to 721,801
_RS10115
HMPREF1058_RS10110: HMPREF1058_RS10110 - hypothetical protein, at 721,803 to 722,048
_RS10110
HMPREF1058_RS10105: HMPREF1058_RS10105 - helix-turn-helix transcriptional regulator, at 722,221 to 722,703
_RS10105
HMPREF1058_RS10100: HMPREF1058_RS10100 - hypothetical protein, at 722,736 to 722,948
_RS10100
Position (kb) 721
722 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 720.254 kb on + strand, within HMPREF1058_RS10125 at 720.317 kb on + strand, within HMPREF1058_RS10125 at 720.317 kb on + strand, within HMPREF1058_RS10125 at 720.420 kb on + strand, within HMPREF1058_RS10125 at 720.484 kb on + strand, within HMPREF1058_RS10125 at 720.484 kb on + strand, within HMPREF1058_RS10125 at 720.516 kb on + strand at 720.700 kb on + strand at 720.724 kb on + strand at 720.724 kb on + strand at 720.724 kb on + strand at 720.724 kb on + strand at 720.724 kb on + strand at 720.780 kb on + strand, within HMPREF1058_RS10120 at 720.812 kb on + strand, within HMPREF1058_RS10120 at 720.871 kb on + strand, within HMPREF1058_RS10120 at 720.871 kb on + strand, within HMPREF1058_RS10120 at 720.984 kb on + strand at 720.996 kb on + strand at 721.078 kb on + strand at 721.084 kb on + strand at 721.084 kb on + strand at 721.095 kb on + strand at 721.095 kb on + strand at 721.211 kb on + strand at 721.429 kb on + strand, within HMPREF1058_RS10115 at 721.557 kb on + strand, within HMPREF1058_RS10115 at 721.559 kb on + strand, within HMPREF1058_RS10115 at 721.656 kb on + strand, within HMPREF1058_RS10115 at 721.656 kb on + strand, within HMPREF1058_RS10115 at 721.723 kb on + strand, within HMPREF1058_RS10115 at 721.759 kb on + strand at 721.979 kb on + strand, within HMPREF1058_RS10110 at 722.012 kb on + strand, within HMPREF1058_RS10110 at 722.073 kb on + strand at 722.075 kb on + strand at 722.091 kb on + strand at 722.103 kb on + strand at 722.103 kb on + strand at 722.704 kb on + strand at 722.747 kb on + strand at 722.792 kb on + strand, within HMPREF1058_RS10100 at 722.792 kb on + strand, within HMPREF1058_RS10100
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml (C) remove 720,254 + HMPREF1058_RS10125 0.77 -1.8 720,317 + HMPREF1058_RS10125 0.80 +0.1 720,317 + HMPREF1058_RS10125 0.80 +1.0 720,420 + HMPREF1058_RS10125 0.85 -0.2 720,484 + HMPREF1058_RS10125 0.89 -0.2 720,484 + HMPREF1058_RS10125 0.89 +0.6 720,516 + +0.4 720,700 + +0.2 720,724 + +0.4 720,724 + -0.3 720,724 + -0.4 720,724 + -0.9 720,724 + +0.4 720,780 + HMPREF1058_RS10120 0.25 -0.1 720,812 + HMPREF1058_RS10120 0.36 +0.6 720,871 + HMPREF1058_RS10120 0.57 +2.6 720,871 + HMPREF1058_RS10120 0.57 -0.8 720,984 + -0.6 720,996 + +2.9 721,078 + +1.6 721,084 + +2.6 721,084 + +1.1 721,095 + -0.7 721,095 + +1.5 721,211 + -0.9 721,429 + HMPREF1058_RS10115 0.32 -0.0 721,557 + HMPREF1058_RS10115 0.56 +1.3 721,559 + HMPREF1058_RS10115 0.56 -0.6 721,656 + HMPREF1058_RS10115 0.74 +0.2 721,656 + HMPREF1058_RS10115 0.74 +0.5 721,723 + HMPREF1058_RS10115 0.86 -0.1 721,759 + -0.9 721,979 + HMPREF1058_RS10110 0.72 -0.1 722,012 + HMPREF1058_RS10110 0.85 +0.2 722,073 + +0.3 722,075 + +0.2 722,091 + -0.2 722,103 + +0.7 722,103 + -0.2 722,704 + -0.9 722,747 + -1.2 722,792 + HMPREF1058_RS10100 0.26 +2.3 722,792 + HMPREF1058_RS10100 0.26 +3.2
Or see this region's nucleotide sequence