Experiment: Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS07745 and HMPREF1058_RS07740 are separated by 166 nucleotides HMPREF1058_RS07740 and HMPREF1058_RS07735 are separated by 8 nucleotides HMPREF1058_RS07735 and HMPREF1058_RS07730 are separated by 13 nucleotides
HMPREF1058_RS07745: HMPREF1058_RS07745 - N-acetylglucosamine-6-phosphate deacetylase, at 146,514 to 147,677
_RS07745
HMPREF1058_RS07740: HMPREF1058_RS07740 - threonylcarbamoyl-AMP synthase, at 147,844 to 148,419
_RS07740
HMPREF1058_RS07735: HMPREF1058_RS07735 - chloride channel protein, at 148,428 to 150,230
_RS07735
HMPREF1058_RS07730: HMPREF1058_RS07730 - methionyl-tRNA formyltransferase, at 150,244 to 151,218
_RS07730
Position (kb) 148
149
150
151 Strain fitness (log2 ratio) -1
0
1 at 147.448 kb on + strand, within HMPREF1058_RS07745 at 147.449 kb on - strand, within HMPREF1058_RS07745 at 147.666 kb on - strand at 147.680 kb on + strand at 147.703 kb on - strand at 148.410 kb on + strand at 148.498 kb on + strand at 148.778 kb on + strand, within HMPREF1058_RS07735 at 149.247 kb on + strand, within HMPREF1058_RS07735 at 149.310 kb on + strand, within HMPREF1058_RS07735 at 149.384 kb on + strand, within HMPREF1058_RS07735 at 149.713 kb on + strand, within HMPREF1058_RS07735 at 149.727 kb on + strand, within HMPREF1058_RS07735 at 149.763 kb on + strand, within HMPREF1058_RS07735 at 149.763 kb on + strand, within HMPREF1058_RS07735 at 149.890 kb on + strand, within HMPREF1058_RS07735 at 150.237 kb on + strand at 150.237 kb on + strand at 150.237 kb on + strand at 150.237 kb on + strand at 151.206 kb on + strand at 151.206 kb on + strand at 151.224 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml (C) remove 147,448 + HMPREF1058_RS07745 0.80 -0.4 147,449 - HMPREF1058_RS07745 0.80 +0.2 147,666 - -0.5 147,680 + +0.3 147,703 - +1.4 148,410 + -0.4 148,498 + +0.8 148,778 + HMPREF1058_RS07735 0.19 -0.4 149,247 + HMPREF1058_RS07735 0.45 -0.2 149,310 + HMPREF1058_RS07735 0.49 +1.6 149,384 + HMPREF1058_RS07735 0.53 +1.2 149,713 + HMPREF1058_RS07735 0.71 -0.5 149,727 + HMPREF1058_RS07735 0.72 -0.4 149,763 + HMPREF1058_RS07735 0.74 -0.4 149,763 + HMPREF1058_RS07735 0.74 -0.1 149,890 + HMPREF1058_RS07735 0.81 -0.4 150,237 + +0.9 150,237 + -0.3 150,237 + -0.0 150,237 + -0.6 151,206 + +0.5 151,206 + -0.3 151,224 - +0.3
Or see this region's nucleotide sequence