Experiment: Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS07330 and HMPREF1058_RS07325 overlap by 1 nucleotides HMPREF1058_RS07325 and HMPREF1058_RS07320 are separated by 176 nucleotides
HMPREF1058_RS07330: HMPREF1058_RS07330 - efflux RND transporter permease subunit, at 258,426 to 261,551
_RS07330
HMPREF1058_RS07325: HMPREF1058_RS07325 - efflux RND transporter periplasmic adaptor subunit, at 261,551 to 262,618
_RS07325
HMPREF1058_RS07320: HMPREF1058_RS07320 - AraC family transcriptional regulator, at 262,795 to 263,673
_RS07320
Position (kb) 261
262
263 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 260.582 kb on - strand, within HMPREF1058_RS07330 at 260.649 kb on + strand, within HMPREF1058_RS07330 at 260.701 kb on - strand, within HMPREF1058_RS07330 at 260.726 kb on - strand, within HMPREF1058_RS07330 at 260.767 kb on - strand, within HMPREF1058_RS07330 at 260.838 kb on + strand, within HMPREF1058_RS07330 at 260.893 kb on + strand, within HMPREF1058_RS07330 at 260.906 kb on - strand, within HMPREF1058_RS07330 at 260.994 kb on - strand, within HMPREF1058_RS07330 at 261.019 kb on + strand, within HMPREF1058_RS07330 at 261.037 kb on - strand, within HMPREF1058_RS07330 at 261.124 kb on + strand, within HMPREF1058_RS07330 at 261.125 kb on - strand, within HMPREF1058_RS07330 at 261.125 kb on - strand, within HMPREF1058_RS07330 at 261.139 kb on - strand, within HMPREF1058_RS07330 at 261.207 kb on + strand, within HMPREF1058_RS07330 at 261.207 kb on + strand, within HMPREF1058_RS07330 at 261.273 kb on + strand at 261.552 kb on + strand at 261.553 kb on - strand at 261.555 kb on - strand at 261.599 kb on + strand at 261.729 kb on - strand, within HMPREF1058_RS07325 at 261.762 kb on + strand, within HMPREF1058_RS07325 at 261.891 kb on - strand, within HMPREF1058_RS07325 at 261.909 kb on + strand, within HMPREF1058_RS07325 at 261.909 kb on + strand, within HMPREF1058_RS07325 at 261.910 kb on - strand, within HMPREF1058_RS07325 at 261.911 kb on + strand, within HMPREF1058_RS07325 at 261.911 kb on + strand, within HMPREF1058_RS07325 at 261.912 kb on - strand, within HMPREF1058_RS07325 at 261.912 kb on - strand, within HMPREF1058_RS07325 at 261.912 kb on - strand, within HMPREF1058_RS07325 at 261.948 kb on - strand, within HMPREF1058_RS07325 at 261.996 kb on + strand, within HMPREF1058_RS07325 at 261.996 kb on + strand, within HMPREF1058_RS07325 at 261.997 kb on - strand, within HMPREF1058_RS07325 at 261.997 kb on - strand, within HMPREF1058_RS07325 at 261.997 kb on - strand, within HMPREF1058_RS07325 at 262.021 kb on + strand, within HMPREF1058_RS07325 at 262.183 kb on + strand, within HMPREF1058_RS07325 at 262.464 kb on - strand, within HMPREF1058_RS07325 at 262.589 kb on - strand at 262.619 kb on - strand at 262.619 kb on - strand at 262.619 kb on - strand at 262.642 kb on - strand at 262.719 kb on - strand at 262.750 kb on - strand at 262.942 kb on - strand, within HMPREF1058_RS07320 at 262.972 kb on + strand, within HMPREF1058_RS07320 at 262.973 kb on - strand, within HMPREF1058_RS07320 at 262.973 kb on - strand, within HMPREF1058_RS07320 at 262.978 kb on + strand, within HMPREF1058_RS07320 at 262.979 kb on - strand, within HMPREF1058_RS07320 at 262.979 kb on - strand, within HMPREF1058_RS07320 at 262.990 kb on - strand, within HMPREF1058_RS07320 at 263.051 kb on + strand, within HMPREF1058_RS07320 at 263.057 kb on - strand, within HMPREF1058_RS07320 at 263.124 kb on + strand, within HMPREF1058_RS07320 at 263.276 kb on - strand, within HMPREF1058_RS07320 at 263.289 kb on + strand, within HMPREF1058_RS07320 at 263.290 kb on - strand at 263.290 kb on - strand, within HMPREF1058_RS07320 at 263.294 kb on - strand, within HMPREF1058_RS07320 at 263.294 kb on - strand, within HMPREF1058_RS07320 at 263.404 kb on + strand, within HMPREF1058_RS07320 at 263.408 kb on - strand, within HMPREF1058_RS07320 at 263.600 kb on - strand at 263.612 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml (C) remove 260,582 - HMPREF1058_RS07330 0.69 -3.4 260,649 + HMPREF1058_RS07330 0.71 -1.3 260,701 - HMPREF1058_RS07330 0.73 -2.3 260,726 - HMPREF1058_RS07330 0.74 +1.0 260,767 - HMPREF1058_RS07330 0.75 -1.4 260,838 + HMPREF1058_RS07330 0.77 +0.8 260,893 + HMPREF1058_RS07330 0.79 -2.9 260,906 - HMPREF1058_RS07330 0.79 -3.6 260,994 - HMPREF1058_RS07330 0.82 -1.5 261,019 + HMPREF1058_RS07330 0.83 -1.5 261,037 - HMPREF1058_RS07330 0.84 -1.4 261,124 + HMPREF1058_RS07330 0.86 -1.5 261,125 - HMPREF1058_RS07330 0.86 -0.6 261,125 - HMPREF1058_RS07330 0.86 -2.0 261,139 - HMPREF1058_RS07330 0.87 -2.8 261,207 + HMPREF1058_RS07330 0.89 -1.8 261,207 + HMPREF1058_RS07330 0.89 -2.4 261,273 + -1.8 261,552 + -0.1 261,553 - -1.9 261,555 - -1.6 261,599 + -1.5 261,729 - HMPREF1058_RS07325 0.17 +0.4 261,762 + HMPREF1058_RS07325 0.20 -3.6 261,891 - HMPREF1058_RS07325 0.32 -0.2 261,909 + HMPREF1058_RS07325 0.34 -1.5 261,909 + HMPREF1058_RS07325 0.34 -2.5 261,910 - HMPREF1058_RS07325 0.34 -1.4 261,911 + HMPREF1058_RS07325 0.34 -2.4 261,911 + HMPREF1058_RS07325 0.34 -2.3 261,912 - HMPREF1058_RS07325 0.34 -0.7 261,912 - HMPREF1058_RS07325 0.34 -0.9 261,912 - HMPREF1058_RS07325 0.34 -1.6 261,948 - HMPREF1058_RS07325 0.37 -2.3 261,996 + HMPREF1058_RS07325 0.42 -1.3 261,996 + HMPREF1058_RS07325 0.42 -2.8 261,997 - HMPREF1058_RS07325 0.42 -0.8 261,997 - HMPREF1058_RS07325 0.42 -3.2 261,997 - HMPREF1058_RS07325 0.42 -2.9 262,021 + HMPREF1058_RS07325 0.44 -1.7 262,183 + HMPREF1058_RS07325 0.59 -2.1 262,464 - HMPREF1058_RS07325 0.85 -1.7 262,589 - +0.0 262,619 - -2.5 262,619 - -1.3 262,619 - -2.0 262,642 - -1.7 262,719 - +0.0 262,750 - +1.7 262,942 - HMPREF1058_RS07320 0.17 +1.4 262,972 + HMPREF1058_RS07320 0.20 -0.5 262,973 - HMPREF1058_RS07320 0.20 -2.3 262,973 - HMPREF1058_RS07320 0.20 +0.5 262,978 + HMPREF1058_RS07320 0.21 -1.5 262,979 - HMPREF1058_RS07320 0.21 -0.5 262,979 - HMPREF1058_RS07320 0.21 +1.8 262,990 - HMPREF1058_RS07320 0.22 -1.2 263,051 + HMPREF1058_RS07320 0.29 -3.1 263,057 - HMPREF1058_RS07320 0.30 -2.1 263,124 + HMPREF1058_RS07320 0.37 -1.9 263,276 - HMPREF1058_RS07320 0.55 -1.6 263,289 + HMPREF1058_RS07320 0.56 -0.5 263,290 - -0.5 263,290 - HMPREF1058_RS07320 0.56 -2.2 263,294 - HMPREF1058_RS07320 0.57 +0.8 263,294 - HMPREF1058_RS07320 0.57 -1.9 263,404 + HMPREF1058_RS07320 0.69 -2.2 263,408 - HMPREF1058_RS07320 0.70 -1.5 263,600 - -0.8 263,612 - -0.7
Or see this region's nucleotide sequence